Wall clock time and date at job start Fri Apr 10 2020 14:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35897 * 117.00331 * 2 1 4 4 C 1.38481 * 120.02904 * 359.97438 * 3 2 1 5 5 C 1.38650 * 120.02771 * 179.70246 * 4 3 2 6 6 O 1.35898 * 119.95810 * 180.27682 * 5 4 3 7 7 C 1.42896 * 116.99995 * 359.97438 * 6 5 4 8 8 C 1.39687 * 120.08281 * 0.25599 * 5 4 3 9 9 O 1.35983 * 119.97066 * 180.02562 * 8 5 4 10 10 C 1.42903 * 116.99644 * 179.97438 * 9 8 5 11 11 C 1.38258 * 120.05516 * 0.02562 * 8 5 4 12 12 C 1.39091 * 119.97583 * 0.02562 * 11 8 5 13 13 N 1.39209 * 120.04340 * 179.97438 * 12 11 8 14 14 C 1.34776 * 119.99735 * 24.88532 * 13 12 11 15 15 O 1.21853 * 120.00248 * 5.51836 * 14 13 12 16 16 C 1.41368 * 119.99908 * 185.52463 * 14 13 12 17 17 H 1.07999 * 119.99905 * 359.97438 * 16 14 13 18 18 C 1.40147 * 119.99951 * 180.02562 * 16 14 13 19 19 N 1.30624 * 120.00108 * 359.97438 * 18 16 14 20 20 Si 1.86797 * 119.99658 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47653 * 59.99845 * 20 18 16 22 22 H 1.48506 * 109.46751 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47251 * 299.99407 * 20 18 16 24 24 H 1.08995 * 109.46853 * 300.00136 * 1 2 3 25 25 H 1.08998 * 109.46895 * 60.00003 * 1 2 3 26 26 H 1.08994 * 109.47327 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.98086 * 359.97438 * 4 3 2 28 28 H 1.09000 * 109.47251 * 60.00098 * 7 6 5 29 29 H 1.09005 * 109.47148 * 179.97438 * 7 6 5 30 30 H 1.09004 * 109.46965 * 299.99833 * 7 6 5 31 31 H 1.09004 * 109.47123 * 179.97438 * 10 9 8 32 32 H 1.09005 * 109.47313 * 299.99652 * 10 9 8 33 33 H 1.09000 * 109.47096 * 59.99858 * 10 9 8 34 34 H 1.08002 * 120.00912 * 179.97438 * 11 8 5 35 35 H 0.97001 * 120.00438 * 204.88077 * 13 12 11 36 36 H 0.96993 * 120.00512 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2925 2.3726 -0.0005 5 6 1.9220 3.6080 0.0057 6 8 1.1811 4.7472 0.0109 7 6 -0.2399 4.5969 0.0089 8 6 3.3169 3.6830 0.0071 9 8 3.9319 4.8958 0.0138 10 6 5.3610 4.8984 0.0154 11 6 4.0726 2.5252 0.0018 12 6 3.4435 1.2847 -0.0055 13 7 4.2031 0.1181 -0.0115 14 6 5.4577 0.1284 0.4807 15 8 5.8918 1.1303 1.0217 16 6 6.2702 -1.0231 0.3692 17 1 5.8853 -1.9111 -0.1100 18 6 7.5746 -1.0125 0.8814 19 7 8.0399 0.0614 1.4614 20 14 8.6479 -2.5344 0.7347 21 1 8.8282 -2.8767 -0.6990 22 1 9.9729 -2.2667 1.3496 23 1 7.9962 -3.6692 1.4364 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2140 2.3164 -0.0014 28 1 -0.5479 4.0432 0.8959 29 1 -0.7094 5.5807 0.0140 30 1 -0.5464 4.0522 -0.8841 31 1 5.7224 5.9267 0.0204 32 1 5.7243 4.3809 0.9034 33 1 5.7263 4.3895 -0.8766 34 1 5.1510 2.5841 0.0025 35 1 3.8293 -0.7022 -0.3697 36 1 8.9428 0.0689 1.8156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258654595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:45 Heat of formation + Delta-G solvation = -111.934390 kcal Electronic energy + Delta-G solvation = -22383.399947 eV Core-core repulsion = 18834.638620 eV Total energy + Delta-G solvation = -3548.761327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.35724 -38.62787 -38.14905 -37.60877 -35.22401 -33.12838 -32.31763 -29.23430 -29.07394 -27.80707 -26.89685 -26.66574 -25.28943 -22.07785 -21.46337 -19.97147 -18.43342 -17.74631 -17.11636 -16.49751 -15.90807 -15.79254 -15.52492 -15.23637 -14.88550 -14.79616 -14.40791 -14.27422 -13.80493 -13.14812 -12.95419 -12.59236 -12.23533 -12.13354 -11.88456 -11.47018 -11.38508 -11.20937 -11.18170 -11.08717 -10.83536 -10.76020 -10.60337 -10.37575 -9.96827 -9.06861 -8.73097 -7.86955 -7.52587 -6.46372 -6.38307 -4.90885 1.85306 2.03216 3.06770 3.12121 3.14029 3.59536 3.63476 3.85377 3.97724 4.15556 4.49095 4.68923 5.10018 5.19416 5.22169 5.25361 5.27729 5.51961 5.54571 5.59718 5.68338 5.69765 5.78021 5.81252 6.07135 6.18539 6.32190 6.48089 6.76512 7.15811 7.23819 7.44464 7.66096 7.89122 7.99302 8.06779 8.29437 8.78800 9.31028 10.36507 10.57170 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.020523 B = 0.005350 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.977674 B = 5232.168047 C = 6497.391105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.314 6.314 3 C 0.058 3.942 4 C -0.232 4.232 5 C 0.075 3.925 6 O -0.309 6.309 7 C 0.030 3.970 8 C 0.092 3.908 9 O -0.313 6.313 10 C 0.028 3.972 11 C -0.166 4.166 12 C 0.184 3.816 13 N -0.686 5.686 14 C 0.544 3.456 15 O -0.570 6.570 16 C -0.535 4.535 17 H 0.070 0.930 18 C 0.089 3.911 19 N -0.746 5.746 20 Si 0.913 3.087 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.266 1.266 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.133 0.867 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.176 0.824 35 H 0.397 0.603 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.159 3.407 -3.747 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.228 6.228 3 C 0.011 3.989 4 C -0.252 4.252 5 C 0.029 3.971 6 O -0.223 6.223 7 C -0.065 4.065 8 C 0.046 3.954 9 O -0.227 6.227 10 C -0.067 4.067 11 C -0.188 4.188 12 C 0.083 3.917 13 N -0.328 5.328 14 C 0.354 3.646 15 O -0.455 6.455 16 C -0.570 4.570 17 H 0.088 0.912 18 C -0.134 4.134 19 N -0.374 5.374 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.190 1.190 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.193 0.807 35 H 0.230 0.770 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.519 4.331 -3.257 12.730 hybrid contribution -0.082 -1.425 -0.187 1.439 sum -11.600 2.906 -3.444 12.445 Atomic orbital electron populations 1.22903 0.79564 1.03185 1.00599 1.85999 1.20261 1.26586 1.89966 1.18450 0.90459 0.83926 1.06104 1.20643 0.99346 0.90747 1.14492 1.17812 0.87863 0.84954 1.06437 1.86104 1.17643 1.28574 1.89955 1.22915 0.80033 1.02976 1.00600 1.18085 0.88385 0.85252 1.03682 1.86037 1.21103 1.25985 1.89607 1.23015 0.78521 1.02778 1.02392 1.21539 1.02670 0.88574 1.06037 1.17060 0.86269 0.88706 0.99665 1.43870 1.16287 1.08913 1.63700 1.16938 0.78736 0.90083 0.78880 1.90585 1.71964 1.35478 1.47445 1.19950 0.98165 0.99505 1.39422 0.91152 1.25751 0.98008 0.96866 0.92797 1.69987 1.15598 1.27135 1.24647 0.86334 0.78787 0.81740 0.79424 1.19029 1.20348 1.19038 0.93307 0.93376 0.88757 0.84919 0.93366 0.88875 0.93388 0.89067 0.91777 0.92916 0.80686 0.76959 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.31 -5.35 9.91 -19.42 -0.19 -5.54 16 3 C 0.06 1.12 6.72 -38.85 -0.26 0.86 16 4 C -0.23 -3.95 8.01 -39.34 -0.32 -4.27 16 5 C 0.08 1.42 6.72 -38.89 -0.26 1.16 16 6 O -0.31 -5.24 10.28 -33.90 -0.35 -5.58 16 7 C 0.03 0.34 9.81 101.05 0.99 1.34 16 8 C 0.09 1.91 6.71 -39.03 -0.26 1.65 16 9 O -0.31 -6.20 10.28 -34.17 -0.35 -6.55 16 10 C 0.03 0.48 9.81 101.05 0.99 1.47 16 11 C -0.17 -3.78 7.69 -39.26 -0.30 -4.08 16 12 C 0.18 4.12 6.45 -83.56 -0.54 3.58 16 13 N -0.69 -16.21 5.24 -12.37 -0.06 -16.27 16 14 C 0.54 15.11 7.36 -15.07 -0.11 14.99 16 15 O -0.57 -17.37 12.01 5.05 0.06 -17.31 16 16 C -0.54 -14.54 9.29 -37.68 -0.35 -14.89 16 17 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 18 C 0.09 2.36 5.50 -17.35 -0.10 2.26 16 19 N -0.75 -21.09 11.72 55.56 0.65 -20.44 16 20 Si 0.91 19.18 29.56 -169.99 -5.02 14.15 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.09 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.13 1.78 4.51 -52.49 -0.24 1.54 16 28 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.19 7.66 -51.93 -0.40 0.79 16 33 H 0.05 0.88 7.66 -51.93 -0.40 0.49 16 34 H 0.18 4.36 3.99 -52.49 -0.21 4.15 16 35 H 0.40 8.42 8.30 -40.82 -0.34 8.08 16 36 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -33.67 307.49 -4.14 -37.81 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -3.98 Total: 9.64 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 0.48 Total: 5.45 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.59 Total: -36.71 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.83 Total: -34.98 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.67 -4.14 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258654595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.120 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds