Wall clock time and date at job start Fri Apr 10 2020 14:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35491 * 116.99912 * 2 1 4 4 C 1.39161 * 119.50951 * 180.02562 * 3 2 1 5 5 C 1.36955 * 119.39527 * 180.02562 * 4 3 2 6 6 C 1.40317 * 118.46983 * 0.02562 * 5 4 3 7 7 C 1.47480 * 120.50160 * 179.97438 * 6 5 4 8 8 O 1.21507 * 119.99809 * 359.97438 * 7 6 5 9 9 O 1.34739 * 120.00422 * 179.97438 * 7 6 5 10 10 C 1.45193 * 117.00466 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47559 * 179.97438 * 10 9 7 12 12 O 1.42906 * 109.46965 * 64.99801 * 11 10 9 13 13 C 1.42893 * 113.99787 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.46978 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99694 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99665 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 120.00134 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47068 * 90.00501 * 18 16 14 20 20 H 1.48503 * 109.47143 * 210.00244 * 18 16 14 21 21 H 1.48501 * 109.47366 * 330.00360 * 18 16 14 22 22 C 1.39601 * 118.99798 * 359.97438 * 6 5 4 23 23 N 1.31692 * 120.49399 * 0.02781 * 22 6 5 24 24 H 1.08997 * 109.46927 * 60.00214 * 1 2 3 25 25 H 1.08994 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46851 * 300.00122 * 1 2 3 27 27 H 1.08000 * 120.30694 * 0.26960 * 4 3 2 28 28 H 1.08000 * 120.76331 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46811 * 299.99926 * 10 9 7 30 30 H 1.09000 * 109.47407 * 59.99332 * 10 9 7 31 31 H 1.08995 * 109.47339 * 184.99832 * 11 10 9 32 32 H 1.08999 * 109.47089 * 305.00174 * 11 10 9 33 33 H 1.09000 * 109.47422 * 299.99423 * 13 12 11 34 34 H 1.09000 * 109.47572 * 59.99712 * 13 12 11 35 35 H 0.96993 * 120.00197 * 179.97438 * 17 16 14 36 36 H 1.08002 * 119.75283 * 180.02562 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 3.4344 1.2682 -0.0005 5 6 4.0537 2.4897 0.0000 6 6 3.2560 3.6441 0.0016 7 6 3.8758 4.9823 0.0028 8 8 5.0860 5.0913 0.0029 9 8 3.1003 6.0841 0.0039 10 6 3.7786 7.3678 0.0056 11 6 2.7416 8.4927 0.0059 12 8 1.9991 8.4558 1.2265 13 6 0.9981 9.4704 1.3287 14 6 0.2818 9.3381 2.6480 15 1 0.5626 8.5571 3.3390 16 6 -0.7329 10.2136 2.9724 17 7 -1.3576 10.0984 4.1239 18 14 -1.2190 11.5640 1.7768 19 1 -2.2798 11.0615 0.8672 20 1 -1.7299 12.7350 2.5339 21 1 -0.0339 11.9691 0.9790 22 6 1.8668 3.5067 0.0021 23 7 1.3134 2.3117 0.0016 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.0197 0.3606 -0.0053 28 1 5.1312 2.5628 -0.0008 29 1 4.4023 7.4479 0.8959 30 1 4.4030 7.4500 -0.8840 31 1 3.2480 9.4539 -0.0823 32 1 2.0625 8.3612 -0.8365 33 1 1.4681 10.4520 1.2678 34 1 0.2830 9.3587 0.5137 35 1 -2.0711 10.7145 4.3523 36 1 1.2411 4.3871 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815182329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:51 Heat of formation + Delta-G solvation = -153.543521 kcal Electronic energy + Delta-G solvation = -20859.836703 eV Core-core repulsion = 17309.271069 eV Total energy + Delta-G solvation = -3550.565634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.08359 -41.15064 -39.07570 -38.68096 -37.43084 -34.88441 -33.82071 -32.61887 -31.53503 -29.57277 -28.43241 -25.75611 -24.63767 -24.02130 -23.52609 -22.24503 -19.64764 -19.21533 -19.11051 -18.30835 -17.91507 -17.63429 -17.19629 -16.95131 -16.41887 -16.30634 -15.74388 -15.35112 -15.16428 -14.79696 -14.59390 -14.40450 -14.19820 -14.00230 -13.81213 -13.33310 -12.99908 -12.81443 -12.64144 -12.33251 -12.26865 -11.85895 -11.79313 -11.72644 -11.34189 -11.21933 -10.92740 -10.84629 -10.39114 -9.78937 -8.36308 -6.44819 -0.58519 0.06967 1.35364 1.37046 1.38819 1.49404 1.54829 1.94881 2.30870 2.60154 2.96318 2.97528 3.08733 3.50537 3.69747 3.86791 3.93956 3.96061 4.14903 4.39563 4.40923 4.41358 4.50479 4.54273 4.58466 4.66760 4.72731 4.78402 4.95720 5.02055 5.16916 5.31054 5.43873 5.92147 5.99293 6.51114 6.59168 6.62672 6.72746 7.19582 8.81055 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.003481 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.289256 B = 8042.122737 C = 9269.375699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.340 3.660 4 C -0.190 4.190 5 C 0.025 3.975 6 C -0.231 4.231 7 C 0.521 3.479 8 O -0.532 6.532 9 O -0.353 6.353 10 C 0.075 3.925 11 C 0.049 3.951 12 O -0.407 6.407 13 C 0.179 3.821 14 C -0.548 4.548 15 H 0.027 0.973 16 C 0.011 3.989 17 N -0.944 5.944 18 Si 0.958 3.042 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.240 1.240 22 C 0.203 3.797 23 N -0.562 5.562 24 H 0.060 0.940 25 H 0.129 0.871 26 H 0.055 0.945 27 H 0.183 0.817 28 H 0.173 0.827 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.019 0.981 34 H 0.016 0.984 35 H 0.273 0.727 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.689 -16.747 -14.574 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.211 6.211 3 C 0.161 3.839 4 C -0.210 4.210 5 C 0.001 3.999 6 C -0.235 4.235 7 C 0.367 3.633 8 O -0.424 6.424 9 O -0.269 6.269 10 C 0.002 3.998 11 C -0.027 4.027 12 O -0.327 6.327 13 C 0.103 3.897 14 C -0.586 4.586 15 H 0.045 0.955 16 C -0.186 4.186 17 N -0.583 5.583 18 Si 0.779 3.221 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.163 1.163 22 C 0.046 3.954 23 N -0.286 5.286 24 H 0.079 0.921 25 H 0.147 0.853 26 H 0.074 0.926 27 H 0.200 0.800 28 H 0.190 0.810 29 H 0.089 0.911 30 H 0.132 0.868 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.082 0.918 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.120 -17.121 -14.312 23.747 hybrid contribution 0.141 1.051 0.080 1.063 sum 8.261 -16.070 -14.232 23.001 Atomic orbital electron populations 1.23174 0.75352 1.05160 1.02576 1.86218 1.24745 1.23798 1.86323 1.20599 0.90452 0.84976 0.87855 1.21069 0.91303 1.00424 1.08223 1.21470 1.01991 0.89049 0.87434 1.20003 0.95531 0.91239 1.16751 1.20971 0.84935 0.85427 0.71971 1.90800 1.15706 1.87979 1.47913 1.86611 1.41229 1.15619 1.83455 1.23302 0.94431 0.77991 1.04061 1.22782 0.94353 0.97333 0.88255 1.87924 1.51127 1.55238 1.38433 1.20356 0.86653 0.87259 0.95416 1.21191 1.18530 1.16045 1.02847 0.95483 1.25886 0.94983 1.00228 0.97534 1.70041 1.24557 1.39469 1.24281 0.85574 0.80059 0.77736 0.78749 1.18373 1.20072 1.16349 1.22998 0.91829 0.94342 0.86221 1.67507 1.40956 0.98912 1.21274 0.92082 0.85283 0.92592 0.80004 0.80977 0.91144 0.86760 0.88964 0.91373 0.96365 0.96654 0.91814 0.80717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.37 113.37 1.18 1.64 16 2 O -0.31 -5.74 10.46 -87.92 -0.92 -6.66 16 3 C 0.34 7.25 7.49 84.82 0.64 7.89 16 4 C -0.19 -3.22 9.97 22.19 0.22 -3.00 16 5 C 0.03 0.48 9.66 22.47 0.22 0.70 16 6 C -0.23 -5.74 5.89 -20.01 -0.12 -5.86 16 7 C 0.52 15.16 7.90 70.26 0.55 15.71 16 8 O -0.53 -16.74 16.20 19.82 0.32 -16.42 16 9 O -0.35 -11.04 9.46 -53.84 -0.51 -11.55 16 10 C 0.08 2.12 5.85 71.98 0.42 2.54 16 11 C 0.05 1.53 6.33 71.98 0.46 1.99 16 12 O -0.41 -18.55 10.30 -145.57 -1.50 -20.05 16 13 C 0.18 8.74 4.76 71.24 0.34 9.08 16 14 C -0.55 -33.37 9.99 25.60 0.26 -33.12 16 15 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 16 C 0.01 0.68 5.47 84.66 0.46 1.14 16 17 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 18 Si 0.96 42.61 27.47 68.60 1.88 44.50 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.24 -9.63 6.54 99.48 0.65 -8.98 16 22 C 0.20 5.18 10.79 85.04 0.92 6.10 16 23 N -0.56 -14.02 9.19 -307.72 -2.83 -16.84 16 24 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 25 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.06 0.92 8.10 -2.38 -0.02 0.90 16 27 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 28 H 0.17 2.66 7.73 -2.91 -0.02 2.64 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 30 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 34 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.18 4.52 7.62 -2.91 -0.02 4.49 16 Total: -1.00 -76.19 323.69 3.32 -72.87 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.03 Total: 8.60 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 5.54 Total: 4.82 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -2.53 Total: -76.09 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -2.61 Total: -54.69 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.50 kcal Total: -76.19 3.32 -72.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815182329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.677 kcal (2) G-P(sol) polarization free energy of solvation -76.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds