Wall clock time and date at job start Fri Apr 10 2020 14:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35634 * 116.99907 * 2 1 4 4 C 1.39356 * 120.54026 * 359.97438 * 3 2 1 5 5 C 1.38287 * 118.43870 * 179.97438 * 4 3 2 6 6 C 1.38805 * 119.45190 * 359.97438 * 5 4 3 7 7 N 1.31344 * 121.07650 * 0.02562 * 6 5 4 8 8 C 1.32902 * 121.69252 * 359.97438 * 7 6 5 9 9 C 1.47707 * 119.78887 * 180.02562 * 8 7 6 10 10 O 1.21476 * 119.99980 * 179.97438 * 9 8 7 11 11 O 1.34722 * 119.99808 * 359.97438 * 9 8 7 12 12 C 1.45207 * 116.99710 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47012 * 179.97438 * 12 11 9 14 14 O 1.42905 * 109.47050 * 65.00164 * 13 12 11 15 15 C 1.42902 * 113.99976 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99594 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00201 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99888 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47214 * 89.99774 * 20 18 16 22 22 H 1.48505 * 109.46877 * 209.99676 * 20 18 16 23 23 H 1.48496 * 109.47116 * 329.99379 * 20 18 16 24 24 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46849 * 299.99999 * 1 2 3 26 26 H 1.08997 * 109.46798 * 60.00099 * 1 2 3 27 27 H 1.07995 * 120.78382 * 359.95873 * 4 3 2 28 28 H 1.07999 * 120.27315 * 179.97438 * 5 4 3 29 29 H 1.08007 * 119.46140 * 179.72011 * 6 5 4 30 30 H 1.08999 * 109.47220 * 299.99637 * 12 11 9 31 31 H 1.09000 * 109.47054 * 60.00123 * 12 11 9 32 32 H 1.09002 * 109.47264 * 185.00079 * 13 12 11 33 33 H 1.09004 * 109.47437 * 305.00511 * 13 12 11 34 34 H 1.08989 * 109.46895 * 300.00121 * 15 14 13 35 35 H 1.09002 * 109.46788 * 60.00250 * 15 14 13 36 36 H 0.96993 * 120.00112 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2969 2.3843 -0.0005 5 6 1.9694 3.5927 0.0000 6 6 3.3574 3.6012 0.0016 7 7 4.0423 2.4804 0.0021 8 6 3.4414 1.2950 0.0016 9 6 4.2530 0.0609 0.0028 10 8 3.7078 -1.0247 0.0028 11 8 5.5980 0.1392 0.0039 12 6 6.3312 -1.1141 0.0055 13 6 7.8339 -0.8258 0.0059 14 8 8.1938 -0.1756 1.2265 15 6 9.5838 0.1403 1.3288 16 6 9.8486 0.8197 2.6476 17 1 9.0367 0.9934 3.3383 18 6 11.1274 1.2206 2.9719 19 7 12.1160 1.0097 2.1306 20 14 11.4559 2.0622 4.6069 21 1 11.7831 1.0398 5.6330 22 1 12.5984 2.9996 4.4603 23 1 10.2477 2.8163 5.0270 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2174 2.3527 -0.0016 28 1 1.4192 4.5220 -0.0008 29 1 3.8829 4.5448 -0.0025 30 1 6.0705 -1.6864 0.8958 31 1 6.0720 -1.6879 -0.8842 32 1 8.3837 -1.7629 -0.0824 33 1 8.0801 -0.1793 -0.8365 34 1 10.1701 -0.7764 1.2677 35 1 9.8657 0.8070 0.5138 36 1 13.0155 1.2920 2.3586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869605223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:14 Heat of formation + Delta-G solvation = -125.223614 kcal Electronic energy + Delta-G solvation = -21154.364902 eV Core-core repulsion = 17605.027310 eV Total energy + Delta-G solvation = -3549.337591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18290 -39.66390 -38.47579 -36.90052 -35.81429 -32.81181 -32.64525 -31.20889 -29.93083 -27.84316 -26.88130 -25.28494 -23.21656 -22.47016 -22.12592 -21.08950 -18.60917 -18.07952 -17.31609 -16.57291 -16.55539 -16.26914 -16.06443 -15.30624 -15.19182 -14.73510 -14.50365 -14.25218 -14.02471 -13.83613 -13.50557 -12.92769 -12.67809 -12.43364 -11.92345 -11.84808 -11.82920 -11.32559 -10.84385 -10.78512 -10.69978 -10.46277 -10.22677 -10.18071 -9.99642 -9.83334 -9.04862 -8.81409 -8.78850 -8.12495 -6.05248 -4.06198 0.32958 0.91896 2.48855 2.67049 2.82623 3.35021 3.39487 3.45989 3.59972 4.07799 4.20943 4.38727 4.39727 4.61152 4.72397 4.74591 4.83467 4.90042 5.09603 5.16438 5.31270 5.34702 5.50145 5.57965 5.60472 5.97580 6.00212 6.05161 6.20568 6.63841 6.81725 7.14414 7.48809 7.52415 7.85699 8.02367 8.20713 8.62093 9.06990 9.58147 11.06483 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.003443 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.444668 B = 8130.185029 C = 8900.592333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.276 6.276 3 C 0.139 3.861 4 C -0.178 4.178 5 C -0.101 4.101 6 C 0.060 3.940 7 N -0.388 5.388 8 C 0.060 3.940 9 C 0.520 3.480 10 O -0.492 6.492 11 O -0.318 6.318 12 C 0.073 3.927 13 C 0.063 3.937 14 O -0.390 6.390 15 C 0.194 3.806 16 C -0.512 4.512 17 H 0.067 0.933 18 C 0.055 3.945 19 N -0.900 5.900 20 Si 0.908 3.092 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.271 1.271 24 H 0.106 0.894 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.170 0.830 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.005 0.995 35 H 0.008 0.992 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.879 2.560 -7.379 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.186 6.186 3 C 0.089 3.911 4 C -0.205 4.205 5 C -0.121 4.121 6 C -0.102 4.102 7 N -0.099 5.099 8 C -0.076 4.076 9 C 0.362 3.638 10 O -0.379 6.379 11 O -0.232 6.232 12 C -0.001 4.001 13 C -0.015 4.015 14 O -0.309 6.309 15 C 0.120 3.880 16 C -0.550 4.550 17 H 0.085 0.915 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.735 3.265 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.125 0.875 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.187 0.813 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.025 0.975 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.939 2.030 -7.250 25.095 hybrid contribution -0.665 0.443 0.581 0.989 sum -24.604 2.473 -6.668 25.611 Atomic orbital electron populations 1.23241 0.78233 1.04821 1.01339 1.86403 1.21230 1.24572 1.86377 1.19994 0.91820 0.86022 0.93261 1.21710 1.01076 0.91571 1.06114 1.22335 0.95874 0.98503 0.95346 1.22902 0.91209 0.96690 0.99409 1.67835 1.39323 0.97062 1.05660 1.19576 0.87132 0.91710 1.09222 1.20436 0.82055 0.87651 0.73647 1.90865 1.73229 1.28382 1.45458 1.86773 1.17586 1.36324 1.82546 1.23263 0.90865 0.83473 1.02508 1.22307 0.91017 0.97565 0.90578 1.87931 1.29712 1.78439 1.34856 1.20225 0.75567 0.94679 0.97513 1.21070 0.94028 1.37860 1.02086 0.91506 1.24945 0.95641 0.96127 0.97824 1.69964 1.00467 1.47560 1.35948 0.86331 0.77883 0.79235 0.83020 1.20513 1.21098 1.19594 0.87523 0.92320 0.92374 0.83365 0.83627 0.81267 0.90453 0.90404 0.91977 0.93127 0.97673 0.97461 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.83 101.05 0.99 1.12 16 2 O -0.28 -3.37 8.56 -40.56 -0.35 -3.72 16 3 C 0.14 1.72 6.71 -38.53 -0.26 1.46 16 4 C -0.18 -1.49 9.13 -39.15 -0.36 -1.85 16 5 C -0.10 -0.76 10.10 -39.35 -0.40 -1.16 16 6 C 0.06 0.63 11.17 -17.55 -0.20 0.43 16 7 N -0.39 -5.92 10.11 -9.72 -0.10 -6.01 16 8 C 0.06 0.94 6.76 -82.90 -0.56 0.38 16 9 C 0.52 9.39 7.94 34.60 0.27 9.67 16 10 O -0.49 -9.22 14.93 -26.59 -0.40 -9.61 16 11 O -0.32 -6.21 10.01 -43.33 -0.43 -6.65 16 12 C 0.07 1.28 5.85 37.16 0.22 1.49 16 13 C 0.06 1.24 6.33 37.16 0.24 1.47 16 14 O -0.39 -10.02 10.30 -38.79 -0.40 -10.42 16 15 C 0.19 5.53 5.69 36.01 0.20 5.74 16 16 C -0.51 -15.64 9.43 -34.44 -0.32 -15.96 16 17 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 20 Si 0.91 22.39 29.54 -169.99 -5.02 17.37 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.29 7.70 -51.93 -0.40 -0.11 16 26 H 0.06 0.27 7.69 -51.93 -0.40 -0.13 16 27 H 0.15 0.72 6.46 -52.49 -0.34 0.38 16 28 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 29 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.01 0.16 8.14 -51.94 -0.42 -0.27 16 35 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -37.24 323.53 -5.84 -43.08 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: -4.49 Total: -6.51 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.27 Total: 4.35 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.64 Total: -32.76 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.58 Total: -30.40 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.24 -5.84 -43.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869605223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.148 kcal (2) G-P(sol) polarization free energy of solvation -37.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds