Wall clock time and date at job start Fri Apr 10 2020 14:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35634 * 116.99907 * 2 1 4 4 C 1.39356 * 120.54026 * 359.97438 * 3 2 1 5 5 C 1.38287 * 118.43870 * 179.97438 * 4 3 2 6 6 C 1.38805 * 119.45190 * 359.97438 * 5 4 3 7 7 N 1.31344 * 121.07650 * 0.02562 * 6 5 4 8 8 C 1.32902 * 121.69252 * 359.97438 * 7 6 5 9 9 C 1.47707 * 119.78887 * 180.02562 * 8 7 6 10 10 O 1.21476 * 119.99980 * 179.97438 * 9 8 7 11 11 O 1.34722 * 119.99808 * 359.97438 * 9 8 7 12 12 C 1.45207 * 116.99710 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47012 * 179.97438 * 12 11 9 14 14 O 1.42905 * 109.47050 * 65.00164 * 13 12 11 15 15 C 1.42902 * 113.99976 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99594 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00201 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99888 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47214 * 89.99774 * 20 18 16 22 22 H 1.48505 * 109.46877 * 209.99676 * 20 18 16 23 23 H 1.48496 * 109.47116 * 329.99379 * 20 18 16 24 24 H 1.09000 * 109.46859 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46849 * 299.99999 * 1 2 3 26 26 H 1.08997 * 109.46798 * 60.00099 * 1 2 3 27 27 H 1.07995 * 120.78382 * 359.95873 * 4 3 2 28 28 H 1.07999 * 120.27315 * 179.97438 * 5 4 3 29 29 H 1.08007 * 119.46140 * 179.72011 * 6 5 4 30 30 H 1.08999 * 109.47220 * 299.99637 * 12 11 9 31 31 H 1.09000 * 109.47054 * 60.00123 * 12 11 9 32 32 H 1.09002 * 109.47264 * 185.00079 * 13 12 11 33 33 H 1.09004 * 109.47437 * 305.00511 * 13 12 11 34 34 H 1.08989 * 109.46895 * 300.00121 * 15 14 13 35 35 H 1.09002 * 109.46788 * 60.00250 * 15 14 13 36 36 H 0.96993 * 120.00112 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2969 2.3843 -0.0005 5 6 1.9694 3.5927 0.0000 6 6 3.3574 3.6012 0.0016 7 7 4.0423 2.4804 0.0021 8 6 3.4414 1.2950 0.0016 9 6 4.2530 0.0609 0.0028 10 8 3.7078 -1.0247 0.0028 11 8 5.5980 0.1392 0.0039 12 6 6.3312 -1.1141 0.0055 13 6 7.8339 -0.8258 0.0059 14 8 8.1938 -0.1756 1.2265 15 6 9.5838 0.1403 1.3288 16 6 9.8486 0.8197 2.6476 17 1 9.0367 0.9934 3.3383 18 6 11.1274 1.2206 2.9719 19 7 12.1160 1.0097 2.1306 20 14 11.4559 2.0622 4.6069 21 1 11.7831 1.0398 5.6330 22 1 12.5984 2.9996 4.4603 23 1 10.2477 2.8163 5.0270 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2174 2.3527 -0.0016 28 1 1.4192 4.5220 -0.0008 29 1 3.8829 4.5448 -0.0025 30 1 6.0705 -1.6864 0.8958 31 1 6.0720 -1.6879 -0.8842 32 1 8.3837 -1.7629 -0.0824 33 1 8.0801 -0.1793 -0.8365 34 1 10.1701 -0.7764 1.2677 35 1 9.8657 0.8070 0.5138 36 1 13.0155 1.2920 2.3586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869605223.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:11 Heat of formation + Delta-G solvation = -151.805408 kcal Electronic energy + Delta-G solvation = -21155.517575 eV Core-core repulsion = 17605.027310 eV Total energy + Delta-G solvation = -3550.490264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.11853 -40.89524 -39.27671 -38.72595 -37.35737 -34.95372 -33.56332 -32.11927 -31.50785 -29.06805 -28.38864 -26.33726 -24.57416 -24.01447 -23.62704 -22.35629 -19.53718 -19.06860 -18.70586 -18.17761 -17.96505 -17.68198 -17.21287 -16.75902 -16.35156 -16.32232 -16.06293 -15.37860 -15.20261 -14.83737 -14.63405 -14.30567 -14.06307 -13.74400 -13.46229 -13.19946 -12.91978 -12.70608 -12.53953 -12.45037 -12.43573 -12.02991 -11.74598 -11.72383 -11.29144 -10.91004 -10.90488 -10.71230 -10.27920 -9.65699 -8.32606 -6.45023 -0.55619 0.17505 1.33682 1.39339 1.42880 1.52746 1.55163 2.08571 2.34798 2.69714 3.00826 3.04978 3.15739 3.50522 3.67983 3.91250 3.93769 4.06058 4.08379 4.29203 4.35601 4.36695 4.40754 4.49259 4.64090 4.71142 4.83701 4.84021 4.95229 5.16380 5.28213 5.36152 5.53623 5.94509 6.12080 6.47697 6.52789 6.78687 6.88738 7.26365 8.79895 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.021794 B = 0.003443 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.444668 B = 8130.185029 C = 8900.592333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.310 6.310 3 C 0.139 3.861 4 C -0.167 4.167 5 C -0.072 4.072 6 C 0.049 3.951 7 N -0.438 5.438 8 C 0.007 3.993 9 C 0.513 3.487 10 O -0.513 6.513 11 O -0.344 6.344 12 C 0.075 3.925 13 C 0.056 3.944 14 O -0.411 6.411 15 C 0.208 3.792 16 C -0.552 4.552 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.929 5.929 20 Si 0.985 3.015 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.267 1.267 24 H 0.114 0.886 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.192 0.808 28 H 0.198 0.802 29 H 0.192 0.808 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.054 0.946 34 H -0.006 1.006 35 H -0.012 1.012 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.197 4.436 -6.807 28.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.220 6.220 3 C 0.088 3.912 4 C -0.193 4.193 5 C -0.091 4.091 6 C -0.114 4.114 7 N -0.150 5.150 8 C -0.127 4.127 9 C 0.358 3.642 10 O -0.402 6.402 11 O -0.259 6.259 12 C 0.002 3.998 13 C -0.020 4.020 14 O -0.331 6.331 15 C 0.133 3.867 16 C -0.590 4.590 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.568 5.568 20 Si 0.807 3.193 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.191 1.191 24 H 0.133 0.867 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.209 0.791 28 H 0.215 0.785 29 H 0.209 0.791 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.012 0.988 35 H 0.006 0.994 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.275 3.868 -6.698 27.390 hybrid contribution -0.095 -0.092 0.315 0.342 sum -26.370 3.776 -6.383 27.393 Atomic orbital electron populations 1.23608 0.75408 1.06216 1.03413 1.86353 1.24261 1.25218 1.86184 1.20132 0.90936 0.87519 0.92625 1.22233 1.02916 0.90063 1.04114 1.22876 0.94610 1.00290 0.91307 1.23498 0.93139 0.96083 0.98715 1.67675 1.41455 0.98153 1.07676 1.19390 0.88358 0.90906 1.14017 1.21089 0.81398 0.88912 0.72805 1.90813 1.73196 1.29313 1.46839 1.86761 1.19022 1.37084 1.83066 1.23267 0.89322 0.83450 1.03794 1.22629 0.92841 0.98209 0.88364 1.87879 1.27976 1.79285 1.37952 1.19877 0.76932 0.93504 0.96345 1.21381 0.94713 1.39807 1.03060 0.92431 1.25965 0.94884 0.96149 1.02109 1.70060 1.01113 1.47675 1.37974 0.85166 0.78109 0.78355 0.77669 1.19112 1.19537 1.19123 0.86747 0.90307 0.90010 0.79054 0.78460 0.79097 0.90955 0.87222 0.89539 0.92789 0.98820 0.99425 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.83 113.37 1.11 1.19 16 2 O -0.31 -7.41 8.56 -68.48 -0.59 -8.00 16 3 C 0.14 3.32 6.71 22.95 0.15 3.48 16 4 C -0.17 -2.19 9.13 22.55 0.21 -1.98 16 5 C -0.07 -0.79 10.10 22.42 0.23 -0.56 16 6 C 0.05 0.95 11.17 84.90 0.95 1.90 16 7 N -0.44 -13.74 10.11 -184.67 -1.87 -15.60 16 8 C 0.01 0.23 6.76 41.90 0.28 0.51 16 9 C 0.51 19.72 7.94 70.32 0.56 20.28 16 10 O -0.51 -20.23 14.93 26.93 0.40 -19.83 16 11 O -0.34 -14.29 10.01 -53.66 -0.54 -14.83 16 12 C 0.07 2.75 5.85 71.98 0.42 3.17 16 13 C 0.06 2.29 6.33 71.98 0.46 2.75 16 14 O -0.41 -22.07 10.30 -145.58 -1.50 -23.57 16 15 C 0.21 12.37 5.69 71.24 0.41 12.77 16 16 C -0.55 -34.67 9.43 25.60 0.24 -34.43 16 17 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 18 C 0.01 0.45 5.46 84.66 0.46 0.91 16 19 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 20 Si 0.98 45.86 29.54 68.60 2.03 47.89 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 25 H 0.08 0.50 7.70 -2.39 -0.02 0.48 16 26 H 0.08 0.46 7.69 -2.39 -0.02 0.44 16 27 H 0.19 0.76 6.46 -2.91 -0.02 0.74 16 28 H 0.20 0.16 8.06 -2.91 -0.02 0.13 16 29 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 34 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 35 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 36 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -85.89 323.53 4.79 -81.10 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: 1.09 Total: -0.21 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.48 Total: 9.99 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.58 Total: -72.54 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -2.22 Total: -66.23 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -85.89 4.79 -81.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869605223.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.709 kcal (2) G-P(sol) polarization free energy of solvation -85.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds