Wall clock time and date at job start Fri Apr 10 2020 14:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47964 * 110.99771 * 2 1 4 4 C 1.53935 * 86.17746 * 222.42027 * 3 2 1 5 5 C 1.53001 * 113.72956 * 138.08140 * 4 3 2 6 6 N 1.46500 * 109.47055 * 176.89447 * 5 4 3 7 7 C 1.38415 * 119.99887 * 179.97438 * 6 5 4 8 8 N 1.32741 * 119.43826 * 359.73292 * 7 6 5 9 9 C 1.31478 * 121.74001 * 179.74405 * 8 7 6 10 10 C 1.40783 * 120.38725 * 0.52688 * 9 8 7 11 11 C 1.41196 * 120.56693 * 179.76406 * 10 9 8 12 12 H 1.08000 * 119.99587 * 23.62963 * 11 10 9 13 13 C 1.39867 * 120.00308 * 203.63467 * 11 10 9 14 14 N 1.30905 * 119.99829 * 17.63952 * 13 11 10 15 15 Si 1.86800 * 120.00223 * 197.64181 * 13 11 10 16 16 H 1.48497 * 109.47212 * 89.99300 * 15 13 11 17 17 H 1.48496 * 109.46912 * 209.99909 * 15 13 11 18 18 H 1.48503 * 109.46728 * 329.99638 * 15 13 11 19 19 C 1.41289 * 118.87105 * 359.74301 * 10 9 8 20 20 C 1.36666 * 118.40136 * 359.97438 * 19 10 9 21 21 Cl 1.73596 * 120.26603 * 179.97438 * 20 19 10 22 22 C 1.48189 * 111.06859 * 260.57021 * 2 1 3 23 23 H 1.08999 * 109.47665 * 59.99816 * 1 2 3 24 24 H 1.09002 * 109.46755 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46928 * 299.99249 * 1 2 3 26 26 H 1.09002 * 113.75806 * 108.10426 * 3 2 1 27 27 H 1.09002 * 113.85875 * 336.75317 * 3 2 1 28 28 H 1.08993 * 113.73680 * 269.25162 * 4 3 2 29 29 H 1.09007 * 109.47512 * 56.90070 * 5 4 3 30 30 H 1.09003 * 109.47234 * 296.89491 * 5 4 3 31 31 H 0.96998 * 119.99963 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.80212 * 180.24644 * 9 8 7 33 33 H 0.96998 * 119.99920 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.80263 * 180.02562 * 19 10 9 35 35 H 1.09004 * 113.76145 * 23.23405 * 22 2 1 36 36 H 1.08999 * 113.82615 * 251.80582 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2609 1.8571 -2.1881 6 7 4.2977 1.3225 -3.0745 7 6 4.6865 2.0370 -4.1944 8 7 4.1088 3.2028 -4.4576 9 6 4.4466 3.9210 -5.5058 10 6 5.4362 3.4612 -6.3953 11 6 5.7983 4.2272 -7.5248 12 1 5.6301 5.2940 -7.5303 13 6 6.3748 3.6044 -8.6366 14 7 6.2693 2.3085 -8.7888 15 14 7.2953 4.6218 -9.9043 16 1 8.7276 4.7105 -9.5225 17 1 7.1770 3.9771 -11.2368 18 1 6.7127 5.9866 -9.9612 19 6 6.0611 2.2204 -6.1383 20 6 5.6772 1.5160 -5.0319 21 17 6.4126 -0.0143 -4.6702 22 6 2.0017 -0.2266 -1.3641 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 2.4460 1.6803 0.9483 27 1 1.3021 2.1212 -0.3935 28 1 3.9458 0.5069 -0.5955 29 1 3.5852 2.8178 -1.7879 30 1 2.3363 1.9908 -2.7497 31 1 4.7111 0.4676 -2.8769 32 1 3.9588 4.8672 -5.6878 33 1 6.6694 1.8765 -9.5596 34 1 6.8244 1.8380 -6.7999 35 1 1.3042 0.0405 -2.1580 36 1 2.4505 -1.2100 -1.5039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159221949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:33 Heat of formation + Delta-G solvation = 54.980997 kcal Electronic energy + Delta-G solvation = -19102.204245 eV Core-core repulsion = 16033.682828 eV Total energy + Delta-G solvation = -3068.521417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.02259 -38.66691 -35.59446 -35.20494 -33.63494 -31.11278 -30.52610 -29.09017 -26.54129 -26.19040 -24.56294 -22.71258 -21.49911 -20.90990 -19.67523 -17.46495 -16.74765 -16.20265 -15.74103 -15.20075 -14.95709 -14.73570 -14.28099 -13.98731 -13.49152 -13.19020 -12.94654 -12.80008 -12.44889 -12.14331 -11.79463 -11.57203 -11.40906 -11.26071 -11.12620 -11.00613 -10.76461 -10.74782 -10.61108 -10.37231 -9.85561 -9.50879 -8.98100 -8.80741 -8.29723 -8.16074 -6.94705 -6.70724 -4.32456 2.49458 2.79051 3.04727 3.07634 3.16280 3.19192 3.83302 3.87811 4.01134 4.52715 4.55656 4.77906 4.95937 5.18962 5.31525 5.37966 5.43098 5.51484 5.57390 5.68003 5.68714 5.86976 5.98789 6.13712 6.18107 6.30148 6.44177 6.61902 6.89047 6.92430 7.05398 7.14115 7.62822 7.67341 8.09270 8.34439 8.40682 8.66316 8.70955 9.51653 10.10856 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.003774 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.576229 B = 7417.996601 C = 7980.418646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.489 5.489 3 C 0.010 3.990 4 C -0.127 4.127 5 C 0.158 3.842 6 N -0.740 5.740 7 C 0.290 3.710 8 N -0.503 5.503 9 C 0.014 3.986 10 C 0.038 3.962 11 C -0.453 4.453 12 H 0.083 0.917 13 C 0.073 3.927 14 N -0.797 5.797 15 Si 0.911 3.089 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.089 4.089 20 C -0.103 4.103 21 Cl -0.114 7.114 22 C 0.007 3.993 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.397 0.603 32 H 0.134 0.866 33 H 0.283 0.717 34 H 0.140 0.860 35 H 0.073 0.927 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.844 -3.074 9.760 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.211 5.211 3 C -0.119 4.119 4 C -0.146 4.146 5 C 0.032 3.968 6 N -0.381 5.381 7 C 0.056 3.944 8 N -0.219 5.219 9 C -0.145 4.145 10 C 0.032 3.968 11 C -0.483 4.483 12 H 0.101 0.899 13 C -0.144 4.144 14 N -0.423 5.423 15 Si 0.736 3.264 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.116 4.116 20 C -0.135 4.135 21 Cl -0.087 7.087 22 C -0.122 4.122 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.233 0.767 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.369 -3.412 10.768 12.507 hybrid contribution 0.869 0.081 -1.846 2.042 sum -4.500 -3.332 8.922 10.534 Atomic orbital electron populations 1.22854 0.89898 1.02248 1.01028 1.68502 1.08921 1.18652 1.24999 1.23910 0.96836 0.91412 0.99754 1.23239 0.98597 0.96477 0.96304 1.20897 0.91615 0.95364 0.88917 1.43719 1.44715 1.23759 1.25941 1.17425 0.95387 0.91426 0.90149 1.66763 1.28250 1.05084 1.21799 1.22339 0.98630 1.00016 0.93509 1.18300 0.91744 0.92409 0.94299 1.19343 1.35417 0.95727 0.97857 0.89907 1.25903 0.94448 0.95113 0.98970 1.69799 1.34116 1.10469 1.27945 0.86256 0.80408 0.80729 0.79048 1.19280 1.20339 1.18551 1.21310 1.00304 0.95780 0.94163 1.20931 1.02350 0.89403 1.00856 1.98240 1.82924 1.32704 1.94798 1.24119 0.97066 1.00340 0.90658 0.94594 0.91332 0.91517 0.89298 0.90892 0.88085 0.92717 0.93076 0.76749 0.84861 0.90656 0.84279 0.90846 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.11 9.65 60.07 0.58 0.47 16 2 N -0.49 -5.54 6.55 -246.39 -1.62 -7.15 16 3 C 0.01 0.11 7.55 -2.76 -0.02 0.09 16 4 C -0.13 -1.53 3.93 -89.69 -0.35 -1.88 16 5 C 0.16 2.41 5.50 -4.04 -0.02 2.38 16 6 N -0.74 -13.37 5.64 -60.31 -0.34 -13.72 16 7 C 0.29 6.42 7.48 -155.05 -1.16 5.26 16 8 N -0.50 -11.67 9.52 -11.75 -0.11 -11.78 16 9 C 0.01 0.33 10.97 -16.74 -0.18 0.14 16 10 C 0.04 0.97 5.59 -106.65 -0.60 0.37 16 11 C -0.45 -11.35 9.06 -37.85 -0.34 -11.69 16 12 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 13 C 0.07 1.76 5.17 -17.34 -0.09 1.67 16 14 N -0.80 -19.89 10.92 55.54 0.61 -19.28 16 15 Si 0.91 18.00 29.59 -169.99 -5.03 12.97 16 16 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 C -0.09 -2.22 8.52 -38.99 -0.33 -2.55 16 20 C -0.10 -2.36 6.32 -39.57 -0.25 -2.61 16 21 Cl -0.11 -2.23 27.56 -51.86 -1.43 -3.66 16 22 C 0.01 0.08 7.54 -2.64 -0.02 0.06 16 23 H 0.04 0.34 7.63 -51.93 -0.40 -0.06 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.74 7.88 -51.93 -0.41 0.34 16 28 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.84 7.88 -51.93 -0.41 0.43 16 31 H 0.40 6.66 7.08 -40.82 -0.29 6.37 16 32 H 0.13 2.91 8.06 -52.49 -0.42 2.49 16 33 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 34 H 0.14 3.61 6.19 -52.49 -0.32 3.29 16 35 H 0.07 0.88 7.40 -51.93 -0.38 0.50 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -26.42 315.58 -10.68 -37.10 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.72 Total: 9.05 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.79 Total: -8.29 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -1.46 Total: -51.93 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Atomic # 17 Polarization: -2.23 SS G_CDS: -1.43 Total: -3.66 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.42 -10.68 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159221949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.083 kcal (2) G-P(sol) polarization free energy of solvation -26.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds