Wall clock time and date at job start Fri Apr 10 2020 14:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.47964 * 110.99771 * 2 1 4 4 C 1.53935 * 86.17746 * 222.42027 * 3 2 1 5 5 C 1.53001 * 113.72956 * 138.08140 * 4 3 2 6 6 N 1.46500 * 109.47055 * 176.89447 * 5 4 3 7 7 C 1.38415 * 119.99887 * 179.97438 * 6 5 4 8 8 N 1.32741 * 119.43826 * 359.73292 * 7 6 5 9 9 C 1.31478 * 121.74001 * 179.74405 * 8 7 6 10 10 C 1.40783 * 120.38725 * 0.52688 * 9 8 7 11 11 C 1.41196 * 120.56693 * 179.76406 * 10 9 8 12 12 H 1.08000 * 119.99587 * 23.62963 * 11 10 9 13 13 C 1.39867 * 120.00308 * 203.63467 * 11 10 9 14 14 N 1.30905 * 119.99829 * 17.63952 * 13 11 10 15 15 Si 1.86800 * 120.00223 * 197.64181 * 13 11 10 16 16 H 1.48497 * 109.47212 * 89.99300 * 15 13 11 17 17 H 1.48496 * 109.46912 * 209.99909 * 15 13 11 18 18 H 1.48503 * 109.46728 * 329.99638 * 15 13 11 19 19 C 1.41289 * 118.87105 * 359.74301 * 10 9 8 20 20 C 1.36666 * 118.40136 * 359.97438 * 19 10 9 21 21 Cl 1.73596 * 120.26603 * 179.97438 * 20 19 10 22 22 C 1.48189 * 111.06859 * 260.57021 * 2 1 3 23 23 H 1.08999 * 109.47665 * 59.99816 * 1 2 3 24 24 H 1.09002 * 109.46755 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46928 * 299.99249 * 1 2 3 26 26 H 1.09002 * 113.75806 * 108.10426 * 3 2 1 27 27 H 1.09002 * 113.85875 * 336.75317 * 3 2 1 28 28 H 1.08993 * 113.73680 * 269.25162 * 4 3 2 29 29 H 1.09007 * 109.47512 * 56.90070 * 5 4 3 30 30 H 1.09003 * 109.47234 * 296.89491 * 5 4 3 31 31 H 0.96998 * 119.99963 * 0.02562 * 6 5 4 32 32 H 1.07994 * 119.80212 * 180.24644 * 9 8 7 33 33 H 0.96998 * 119.99920 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.80263 * 180.02562 * 19 10 9 35 35 H 1.09004 * 113.76145 * 23.23405 * 22 2 1 36 36 H 1.08999 * 113.82615 * 251.80582 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0210 0.8793 -1.0361 5 6 3.2609 1.8571 -2.1881 6 7 4.2977 1.3225 -3.0745 7 6 4.6865 2.0370 -4.1944 8 7 4.1088 3.2028 -4.4576 9 6 4.4466 3.9210 -5.5058 10 6 5.4362 3.4612 -6.3953 11 6 5.7983 4.2272 -7.5248 12 1 5.6301 5.2940 -7.5303 13 6 6.3748 3.6044 -8.6366 14 7 6.2693 2.3085 -8.7888 15 14 7.2953 4.6218 -9.9043 16 1 8.7276 4.7105 -9.5225 17 1 7.1770 3.9771 -11.2368 18 1 6.7127 5.9866 -9.9612 19 6 6.0611 2.2204 -6.1383 20 6 5.6772 1.5160 -5.0319 21 17 6.4126 -0.0143 -4.6702 22 6 2.0017 -0.2266 -1.3641 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 2.4460 1.6803 0.9483 27 1 1.3021 2.1212 -0.3935 28 1 3.9458 0.5069 -0.5955 29 1 3.5852 2.8178 -1.7879 30 1 2.3363 1.9908 -2.7497 31 1 4.7111 0.4676 -2.8769 32 1 3.9588 4.8672 -5.6878 33 1 6.6694 1.8765 -9.5596 34 1 6.8244 1.8380 -6.7999 35 1 1.3042 0.0405 -2.1580 36 1 2.4505 -1.2100 -1.5039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159221949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:32 Heat of formation + Delta-G solvation = 38.758900 kcal Electronic energy + Delta-G solvation = -19102.907688 eV Core-core repulsion = 16033.682828 eV Total energy + Delta-G solvation = -3069.224860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.01762 -40.37991 -37.29409 -36.79438 -35.31378 -32.39733 -32.31401 -30.63283 -27.88147 -27.09392 -26.19963 -24.10624 -23.09983 -22.49805 -20.66673 -19.30188 -18.30377 -17.66215 -16.96946 -16.65364 -16.10654 -15.99075 -15.88983 -15.32314 -14.95203 -14.74417 -14.30065 -13.97775 -13.68773 -13.62776 -13.48293 -13.15588 -12.89378 -12.68454 -12.46921 -12.36955 -12.20703 -11.97354 -11.70456 -11.66875 -11.53182 -11.21591 -10.51784 -10.12921 -9.98748 -9.81485 -8.72127 -8.44420 -6.18623 0.65747 0.99655 1.42548 1.43392 1.55347 1.55906 2.23568 2.59225 2.74335 2.96069 3.53008 3.65114 3.74244 4.15228 4.18792 4.30783 4.34150 4.49029 4.54038 4.56727 4.68855 4.76636 4.78129 4.85462 4.96617 4.98536 5.09590 5.22126 5.29337 5.32359 5.35453 5.80232 5.80542 6.04242 6.33516 6.59792 6.76174 6.84127 6.89934 7.72724 8.34178 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.031610 B = 0.003774 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.576229 B = 7417.996601 C = 7980.418646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.498 5.498 3 C 0.016 3.984 4 C -0.120 4.120 5 C 0.162 3.838 6 N -0.731 5.731 7 C 0.292 3.708 8 N -0.510 5.510 9 C 0.007 3.993 10 C 0.011 3.989 11 C -0.483 4.483 12 H 0.086 0.914 13 C 0.034 3.966 14 N -0.830 5.830 15 Si 0.983 3.017 16 H -0.265 1.265 17 H -0.272 1.272 18 H -0.256 1.256 19 C -0.104 4.104 20 C -0.115 4.115 21 Cl -0.085 7.085 22 C 0.007 3.993 23 H 0.035 0.965 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.404 0.596 32 H 0.148 0.852 33 H 0.288 0.712 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 -3.214 10.595 12.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 N -0.220 5.220 3 C -0.113 4.113 4 C -0.140 4.140 5 C 0.037 3.963 6 N -0.371 5.371 7 C 0.057 3.943 8 N -0.227 5.227 9 C -0.151 4.151 10 C 0.005 3.995 11 C -0.513 4.513 12 H 0.104 0.896 13 C -0.180 4.180 14 N -0.457 5.457 15 Si 0.804 3.196 16 H -0.190 1.190 17 H -0.197 1.197 18 H -0.179 1.179 19 C -0.131 4.131 20 C -0.148 4.148 21 Cl -0.057 7.057 22 C -0.122 4.122 23 H 0.054 0.946 24 H 0.092 0.908 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.241 0.759 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.606 -3.571 11.643 13.407 hybrid contribution 0.881 0.018 -1.971 2.159 sum -4.725 -3.554 9.672 11.336 Atomic orbital electron populations 1.22897 0.88781 1.02829 1.01601 1.68503 1.10132 1.18942 1.24420 1.23938 0.96230 0.91363 0.99764 1.23164 0.99294 0.96032 0.95468 1.20969 0.90098 0.96039 0.89229 1.43836 1.44831 1.23566 1.24904 1.17726 0.94603 0.91204 0.90748 1.66831 1.28558 1.05578 1.21733 1.22580 0.98389 1.00625 0.93480 1.18585 0.92645 0.93100 0.95184 1.19602 1.37056 0.96045 0.98609 0.89552 1.26715 0.94586 0.96090 1.00623 1.69856 1.34903 1.11981 1.28912 0.85177 0.78824 0.79182 0.76423 1.18976 1.19710 1.17914 1.21256 1.00588 0.96388 0.94900 1.21009 1.02687 0.90618 1.00492 1.98235 1.82435 1.30509 1.94546 1.24100 0.96864 1.00223 0.90983 0.94601 0.90818 0.90357 0.88049 0.90406 0.87616 0.93347 0.94039 0.75919 0.83520 0.90101 0.85765 0.91308 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.21 9.65 127.69 1.23 1.03 16 2 N -0.50 -10.19 6.55 -933.43 -6.12 -16.31 16 3 C 0.02 0.31 7.55 86.41 0.65 0.96 16 4 C -0.12 -2.68 3.93 -10.15 -0.04 -2.72 16 5 C 0.16 4.73 5.50 86.38 0.47 5.20 16 6 N -0.73 -25.59 5.64 -344.73 -1.94 -27.53 16 7 C 0.29 12.84 7.48 133.32 1.00 13.84 16 8 N -0.51 -23.63 9.52 -191.08 -1.82 -25.45 16 9 C 0.01 0.36 10.97 85.37 0.94 1.29 16 10 C 0.01 0.55 5.59 -21.18 -0.12 0.43 16 11 C -0.48 -24.61 9.06 23.39 0.21 -24.40 16 12 H 0.09 4.17 7.90 -2.91 -0.02 4.15 16 13 C 0.03 1.66 5.17 85.23 0.44 2.10 16 14 N -0.83 -42.04 10.92 21.82 0.24 -41.80 16 15 Si 0.98 36.84 29.59 68.60 2.03 38.87 16 16 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 17 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 19 C -0.10 -5.31 8.52 22.65 0.19 -5.12 16 20 C -0.12 -5.29 6.32 22.28 0.14 -5.15 16 21 Cl -0.09 -3.25 27.56 -2.72 -0.07 -3.32 16 22 C 0.01 0.15 7.54 86.36 0.65 0.80 16 23 H 0.04 0.61 7.63 -2.39 -0.02 0.59 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.42 7.88 -2.39 -0.02 1.40 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.04 1.32 7.88 -2.39 -0.02 1.30 16 31 H 0.40 12.92 7.08 -92.71 -0.66 12.27 16 32 H 0.15 6.47 8.06 -2.91 -0.02 6.45 16 33 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 34 H 0.12 6.64 6.19 -2.91 -0.02 6.62 16 35 H 0.07 1.55 7.40 -2.39 -0.02 1.54 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -56.05 315.58 -1.47 -57.52 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.44 Total: 29.75 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 5.77 Total: -11.73 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -9.64 Total: -111.09 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 17 Polarization: -3.25 SS G_CDS: -0.07 Total: -3.32 kcal Total: -56.05 -1.47 -57.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159221949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.282 kcal (2) G-P(sol) polarization free energy of solvation -56.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds