Wall clock time and date at job start Fri Apr 10 2020 14:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34813 * 116.99777 * 2 1 4 4 O 1.21556 * 120.00271 * 359.97438 * 3 2 1 5 5 C 1.47084 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.40075 * 120.08689 * 359.97438 * 5 3 2 7 7 C 1.37801 * 119.93329 * 180.02562 * 6 5 3 8 8 O 1.36024 * 119.94805 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99565 * 359.97438 * 8 7 6 10 10 C 1.39957 * 120.10933 * 0.02562 * 7 6 5 11 11 N 1.38851 * 119.90593 * 179.97438 * 10 7 6 12 12 C 1.36756 * 119.99662 * 180.02562 * 11 10 7 13 13 H 1.08005 * 120.00195 * 359.97438 * 12 11 10 14 14 C 1.38854 * 120.00228 * 180.02562 * 12 11 10 15 15 N 1.31539 * 119.99780 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00169 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47123 * 119.99891 * 16 14 12 19 19 H 1.48505 * 109.46983 * 240.00107 * 16 14 12 20 20 C 1.38983 * 120.17789 * 0.02562 * 10 7 6 21 21 C 1.38328 * 120.07036 * 0.02562 * 20 10 7 22 22 O 1.35723 * 120.05505 * 180.02562 * 21 20 10 23 23 C 1.42896 * 117.00234 * 359.96917 * 22 21 20 24 24 H 1.08993 * 109.47297 * 60.00150 * 1 2 3 25 25 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46994 * 300.00185 * 1 2 3 27 27 H 1.07998 * 120.03502 * 359.75124 * 6 5 3 28 28 H 1.08999 * 109.46973 * 60.00275 * 9 8 7 29 29 H 1.09000 * 109.46782 * 180.02562 * 9 8 7 30 30 H 1.09001 * 109.47278 * 299.99847 * 9 8 7 31 31 H 0.96994 * 120.00417 * 0.02562 * 11 10 7 32 32 H 0.97000 * 119.99849 * 180.02562 * 15 14 12 33 33 H 1.08004 * 119.96366 * 180.02562 * 20 10 7 34 34 H 1.09005 * 109.47276 * 300.00606 * 23 22 21 35 35 H 1.09002 * 109.46981 * 60.00471 * 23 22 21 36 36 H 1.08995 * 109.47214 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2207 -0.0005 5 6 3.5328 1.2783 -0.0006 6 6 4.2976 0.1047 -0.0006 7 6 5.6735 0.1806 -0.0006 8 8 6.4164 -0.9589 -0.0011 9 6 5.7040 -2.1977 -0.0011 10 6 6.3078 1.4281 0.0000 11 7 7.6945 1.4996 0.0005 12 6 8.3163 2.7177 0.0016 13 1 7.7288 3.6240 0.0016 14 6 9.7030 2.7893 0.0016 15 7 10.4186 1.6856 0.0011 16 14 10.5523 4.4531 0.0023 17 1 9.5304 5.5306 0.0022 18 1 11.4009 4.5752 1.2148 19 1 11.4008 4.5763 -1.2102 20 6 5.5536 2.5955 0.0010 21 6 4.1719 2.5279 0.0021 22 8 3.4356 3.6681 0.0027 23 6 4.1532 4.9038 0.0027 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.8094 -0.8586 0.0039 28 1 5.0772 -2.2564 -0.8908 29 1 6.4138 -3.0249 -0.0011 30 1 5.0778 -2.2568 0.8892 31 1 8.2222 0.6858 0.0001 32 1 11.3873 1.7357 0.0014 33 1 6.0467 3.5563 0.0010 34 1 4.7804 4.9597 0.8925 35 1 4.7797 4.9602 -0.8875 36 1 3.4470 5.7340 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163191634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:26 Heat of formation + Delta-G solvation = -129.091254 kcal Electronic energy + Delta-G solvation = -22204.490055 eV Core-core repulsion = 18654.984751 eV Total energy + Delta-G solvation = -3549.505305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00234 -39.05892 -38.23757 -36.47608 -35.55123 -34.59693 -32.30329 -29.21472 -28.76377 -27.35571 -27.22591 -25.98593 -25.01422 -22.26507 -21.22978 -20.22465 -18.42064 -17.67318 -17.13818 -16.56081 -15.83439 -15.72802 -15.54226 -15.11843 -15.00045 -14.87488 -14.48638 -13.98150 -13.73084 -13.27341 -12.81385 -12.57754 -12.39896 -12.24890 -12.02597 -11.65114 -11.49335 -11.34418 -11.03203 -11.00232 -10.78746 -10.69226 -10.53733 -10.33746 -10.24736 -9.56032 -9.49892 -8.97408 -7.52889 -6.94039 -6.70099 -4.02563 1.75701 2.44456 2.94064 2.99474 3.03759 3.44030 3.47558 3.77348 3.93473 4.04240 4.50402 4.92457 4.95135 5.38557 5.45938 5.48377 5.56819 5.60479 5.61873 5.68221 5.68707 5.84346 5.88515 5.91622 6.12599 6.41586 6.52615 6.67621 6.84343 6.97653 7.06745 7.11180 7.38245 7.45033 8.04943 8.24843 8.38710 8.68395 8.96867 9.16728 10.19608 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.005454 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.464532 B = 5132.482407 C = 6545.197967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.369 6.369 3 C 0.514 3.486 4 O -0.527 6.527 5 C -0.275 4.275 6 C -0.076 4.076 7 C -0.017 4.017 8 O -0.324 6.324 9 C 0.036 3.964 10 C 0.234 3.766 11 N -0.506 5.506 12 C -0.303 4.303 13 H 0.111 0.889 14 C 0.028 3.972 15 N -0.865 5.865 16 Si 0.939 3.061 17 H -0.263 1.263 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.322 4.322 21 C 0.231 3.769 22 O -0.294 6.294 23 C 0.026 3.974 24 H 0.055 0.945 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.411 0.589 32 H 0.283 0.717 33 H 0.135 0.865 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 -2.395 0.006 8.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.288 6.288 3 C 0.364 3.636 4 O -0.418 6.418 5 C -0.281 4.281 6 C -0.098 4.098 7 C -0.064 4.064 8 O -0.239 6.239 9 C -0.060 4.060 10 C 0.104 3.896 11 N -0.102 5.102 12 C -0.433 4.433 13 H 0.128 0.872 14 C -0.180 4.180 15 N -0.498 5.498 16 Si 0.764 3.236 17 H -0.187 1.187 18 H -0.200 1.200 19 H -0.201 1.201 20 C -0.348 4.348 21 C 0.183 3.817 22 O -0.206 6.206 23 C -0.070 4.070 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.248 0.752 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.639 -1.967 0.005 7.888 hybrid contribution 0.564 0.354 0.002 0.666 sum -7.075 -1.613 0.008 7.257 Atomic orbital electron populations 1.23026 0.78086 1.02386 1.01882 1.86560 1.21873 1.34434 1.85889 1.20956 0.89036 0.80532 0.73078 1.90782 1.66696 1.35583 1.48768 1.17088 0.87581 0.90875 1.32596 1.20522 0.91220 0.97224 1.00845 1.18011 0.89598 0.84725 1.14022 1.85949 1.34706 1.12280 1.91011 1.22822 0.97673 0.84794 1.00671 1.16972 0.83942 0.90240 0.98418 1.41138 1.01937 1.09685 1.57405 1.20013 0.90152 0.85918 1.47255 0.87180 1.25537 0.96496 0.99976 0.95969 1.69690 1.07981 1.27899 1.44246 0.85647 0.79384 0.80141 0.78424 1.18704 1.20046 1.20051 1.19951 0.90865 0.97699 1.26298 1.18463 0.89012 0.84519 0.89737 1.86243 1.34458 1.12387 1.87466 1.22994 0.97690 0.84850 1.01455 0.92631 0.89116 0.92640 0.85460 0.93421 0.89368 0.93434 0.75241 0.90714 0.84784 0.92837 0.92831 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.57 101.05 1.07 1.60 16 2 O -0.37 -6.44 9.80 -40.80 -0.40 -6.84 16 3 C 0.51 10.59 7.88 34.32 0.27 10.86 16 4 O -0.53 -11.87 14.93 -26.67 -0.40 -12.27 16 5 C -0.28 -5.82 5.89 -104.82 -0.62 -6.44 16 6 C -0.08 -1.50 8.59 -39.05 -0.34 -1.83 16 7 C -0.02 -0.35 6.70 -39.10 -0.26 -0.61 16 8 O -0.32 -6.30 9.72 -19.82 -0.19 -6.49 16 9 C 0.04 0.51 9.81 101.05 0.99 1.50 16 10 C 0.23 5.28 6.63 -83.76 -0.56 4.73 16 11 N -0.51 -12.07 5.40 -9.52 -0.05 -12.13 16 12 C -0.30 -7.26 9.54 -15.13 -0.14 -7.41 16 13 H 0.11 2.51 5.65 -52.48 -0.30 2.21 16 14 C 0.03 0.65 5.50 -17.45 -0.10 0.55 16 15 N -0.86 -21.46 13.05 55.49 0.72 -20.74 16 16 Si 0.94 18.18 29.55 -169.99 -5.02 13.15 16 17 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 18 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 19 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 20 C -0.32 -6.94 8.27 -39.27 -0.32 -7.27 16 21 C 0.23 4.97 6.69 -38.75 -0.26 4.71 16 22 O -0.29 -6.04 8.55 -40.87 -0.35 -6.39 16 23 C 0.03 0.40 9.81 101.05 0.99 1.39 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.13 2.18 5.81 -52.49 -0.30 1.87 16 28 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 31 H 0.41 10.11 7.21 -40.82 -0.29 9.82 16 32 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 33 H 0.13 2.77 4.14 -52.48 -0.22 2.55 16 34 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 35 H 0.05 0.80 7.66 -51.93 -0.40 0.40 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -29.10 310.65 -4.23 -33.34 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -3.95 Total: 11.88 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 0.73 Total: 1.79 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.67 Total: -32.87 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.34 Total: -31.98 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.15 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.10 -4.23 -33.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163191634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.754 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds