Wall clock time and date at job start Fri Apr 10 2020 14:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34813 * 116.99777 * 2 1 4 4 O 1.21556 * 120.00271 * 359.97438 * 3 2 1 5 5 C 1.47084 * 120.00053 * 180.02562 * 3 2 1 6 6 C 1.40075 * 120.08689 * 359.97438 * 5 3 2 7 7 C 1.37801 * 119.93329 * 180.02562 * 6 5 3 8 8 O 1.36024 * 119.94805 * 180.02562 * 7 6 5 9 9 C 1.42905 * 116.99565 * 359.97438 * 8 7 6 10 10 C 1.39957 * 120.10933 * 0.02562 * 7 6 5 11 11 N 1.38851 * 119.90593 * 179.97438 * 10 7 6 12 12 C 1.36756 * 119.99662 * 180.02562 * 11 10 7 13 13 H 1.08005 * 120.00195 * 359.97438 * 12 11 10 14 14 C 1.38854 * 120.00228 * 180.02562 * 12 11 10 15 15 N 1.31539 * 119.99780 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00169 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47191 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47123 * 119.99891 * 16 14 12 19 19 H 1.48505 * 109.46983 * 240.00107 * 16 14 12 20 20 C 1.38983 * 120.17789 * 0.02562 * 10 7 6 21 21 C 1.38328 * 120.07036 * 0.02562 * 20 10 7 22 22 O 1.35723 * 120.05505 * 180.02562 * 21 20 10 23 23 C 1.42896 * 117.00234 * 359.96917 * 22 21 20 24 24 H 1.08993 * 109.47297 * 60.00150 * 1 2 3 25 25 H 1.08999 * 109.46928 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46994 * 300.00185 * 1 2 3 27 27 H 1.07998 * 120.03502 * 359.75124 * 6 5 3 28 28 H 1.08999 * 109.46973 * 60.00275 * 9 8 7 29 29 H 1.09000 * 109.46782 * 180.02562 * 9 8 7 30 30 H 1.09001 * 109.47278 * 299.99847 * 9 8 7 31 31 H 0.96994 * 120.00417 * 0.02562 * 11 10 7 32 32 H 0.97000 * 119.99849 * 180.02562 * 15 14 12 33 33 H 1.08004 * 119.96366 * 180.02562 * 20 10 7 34 34 H 1.09005 * 109.47276 * 300.00606 * 23 22 21 35 35 H 1.09002 * 109.46981 * 60.00471 * 23 22 21 36 36 H 1.08995 * 109.47214 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2012 0.0000 4 8 1.4020 2.2207 -0.0005 5 6 3.5328 1.2783 -0.0006 6 6 4.2976 0.1047 -0.0006 7 6 5.6735 0.1806 -0.0006 8 8 6.4164 -0.9589 -0.0011 9 6 5.7040 -2.1977 -0.0011 10 6 6.3078 1.4281 0.0000 11 7 7.6945 1.4996 0.0005 12 6 8.3163 2.7177 0.0016 13 1 7.7288 3.6240 0.0016 14 6 9.7030 2.7893 0.0016 15 7 10.4186 1.6856 0.0011 16 14 10.5523 4.4531 0.0023 17 1 9.5304 5.5306 0.0022 18 1 11.4009 4.5752 1.2148 19 1 11.4008 4.5763 -1.2102 20 6 5.5536 2.5955 0.0010 21 6 4.1719 2.5279 0.0021 22 8 3.4356 3.6681 0.0027 23 6 4.1532 4.9038 0.0027 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 3.8094 -0.8586 0.0039 28 1 5.0772 -2.2564 -0.8908 29 1 6.4138 -3.0249 -0.0011 30 1 5.0778 -2.2568 0.8892 31 1 8.2222 0.6858 0.0001 32 1 11.3873 1.7357 0.0014 33 1 6.0467 3.5563 0.0010 34 1 4.7804 4.9597 0.8925 35 1 4.7797 4.9602 -0.8875 36 1 3.4470 5.7340 0.0036 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163191634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:25 Heat of formation + Delta-G solvation = -147.048408 kcal Electronic energy + Delta-G solvation = -22205.268736 eV Core-core repulsion = 18654.984751 eV Total energy + Delta-G solvation = -3550.283985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58499 -40.58491 -39.73586 -38.07926 -37.06219 -36.22638 -34.00869 -30.83949 -30.30137 -28.66807 -28.45823 -27.37316 -26.61841 -23.86699 -22.80031 -21.76856 -20.06802 -19.29675 -18.65471 -18.09311 -17.38379 -17.16259 -17.09920 -16.52826 -16.52113 -16.25181 -16.04459 -15.55663 -15.22243 -14.69794 -14.21160 -13.94319 -13.91429 -13.78044 -13.59462 -13.02158 -12.96433 -12.74752 -12.46140 -12.40080 -12.20942 -12.11375 -12.08711 -11.96598 -11.59473 -11.10584 -11.10322 -10.66100 -9.18823 -8.65416 -8.35910 -5.83244 0.11275 0.79501 1.42126 1.42203 1.55843 1.85419 2.05626 2.18976 2.49522 2.63539 2.82078 3.23316 3.24225 3.99846 4.18138 4.34325 4.42969 4.44465 4.44915 4.48865 4.53690 4.55024 4.73924 4.75721 4.80236 4.83307 4.91724 5.09826 5.19021 5.25584 5.42948 5.57682 5.68475 5.81623 6.54244 6.63212 6.71346 7.11649 7.27045 7.40347 8.50664 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.005454 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.464532 B = 5132.482407 C = 6545.197967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.517 3.483 4 O -0.549 6.549 5 C -0.284 4.284 6 C -0.065 4.065 7 C -0.023 4.023 8 O -0.345 6.345 9 C 0.025 3.975 10 C 0.225 3.775 11 N -0.530 5.530 12 C -0.325 4.325 13 H 0.115 0.885 14 C -0.016 4.016 15 N -0.907 5.907 16 Si 1.003 2.997 17 H -0.253 1.253 18 H -0.275 1.275 19 H -0.275 1.275 20 C -0.324 4.324 21 C 0.222 3.778 22 O -0.311 6.311 23 C 0.018 3.982 24 H 0.056 0.944 25 H 0.133 0.867 26 H 0.056 0.944 27 H 0.156 0.844 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.402 0.598 32 H 0.283 0.717 33 H 0.139 0.861 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 -2.653 0.007 10.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.285 6.285 3 C 0.367 3.633 4 O -0.442 6.442 5 C -0.290 4.290 6 C -0.086 4.086 7 C -0.070 4.070 8 O -0.261 6.261 9 C -0.070 4.070 10 C 0.098 3.902 11 N -0.127 5.127 12 C -0.455 4.455 13 H 0.132 0.868 14 C -0.219 4.219 15 N -0.542 5.542 16 Si 0.825 3.175 17 H -0.176 1.176 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.350 4.350 21 C 0.173 3.827 22 O -0.223 6.223 23 C -0.077 4.077 24 H 0.075 0.925 25 H 0.151 0.849 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.237 0.763 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.452 -2.236 0.007 9.713 hybrid contribution 0.728 0.294 0.001 0.785 sum -8.724 -1.942 0.009 8.937 Atomic orbital electron populations 1.23443 0.75321 1.05306 1.02034 1.86525 1.24480 1.32390 1.85114 1.20859 0.88826 0.81129 0.72470 1.90767 1.67167 1.36631 1.49660 1.17517 0.88635 0.91376 1.31463 1.20756 0.90625 0.97996 0.99271 1.18114 0.90067 0.85044 1.13797 1.85946 1.35923 1.13276 1.90937 1.23194 0.98740 0.83177 1.01856 1.17429 0.83916 0.91520 0.97383 1.41091 1.02137 1.09245 1.60236 1.20273 0.90754 0.86216 1.48243 0.86769 1.26379 0.96799 1.03143 0.95569 1.69781 1.08107 1.29738 1.46620 0.84704 0.78290 0.76422 0.78092 1.17583 1.20020 1.20033 1.20067 0.91117 0.97802 1.26038 1.18632 0.88961 0.85400 0.89726 1.86220 1.35498 1.13311 1.87252 1.23298 0.98671 0.83782 1.01925 0.92524 0.84854 0.92531 0.82690 0.92114 0.86898 0.92123 0.76274 0.90707 0.84385 0.92352 0.92349 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.57 113.37 1.20 1.93 16 2 O -0.37 -11.74 9.80 -57.25 -0.56 -12.30 16 3 C 0.52 20.36 7.88 70.14 0.55 20.91 16 4 O -0.55 -23.93 14.93 26.69 0.40 -23.54 16 5 C -0.28 -11.64 5.89 -19.99 -0.12 -11.76 16 6 C -0.07 -2.44 8.59 22.61 0.19 -2.25 16 7 C -0.02 -0.95 6.70 22.58 0.15 -0.79 16 8 O -0.35 -13.18 9.72 -93.82 -0.91 -14.09 16 9 C 0.02 0.64 9.81 113.37 1.11 1.76 16 10 C 0.22 10.25 6.63 38.63 0.26 10.50 16 11 N -0.53 -26.04 5.40 -184.05 -0.99 -27.04 16 12 C -0.33 -15.99 9.54 84.07 0.80 -15.19 16 13 H 0.11 5.30 5.65 -2.91 -0.02 5.28 16 14 C -0.02 -0.79 5.50 84.88 0.47 -0.33 16 15 N -0.91 -46.53 13.05 21.65 0.28 -46.25 16 16 Si 1.00 37.65 29.55 68.60 2.03 39.68 16 17 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 18 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 19 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 20 C -0.32 -14.00 8.27 22.47 0.19 -13.82 16 21 C 0.22 9.39 6.69 22.81 0.15 9.54 16 22 O -0.31 -12.47 8.55 -69.43 -0.59 -13.07 16 23 C 0.02 0.53 9.81 113.37 1.11 1.65 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.16 4.84 5.81 -2.91 -0.02 4.82 16 28 H 0.06 1.42 7.66 -2.39 -0.02 1.40 16 29 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.06 1.41 7.65 -2.39 -0.02 1.40 16 31 H 0.40 20.65 7.21 -92.71 -0.67 19.98 16 32 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 33 H 0.14 5.74 4.14 -2.91 -0.01 5.73 16 34 H 0.06 1.69 7.66 -2.38 -0.02 1.67 16 35 H 0.06 1.69 7.66 -2.39 -0.02 1.67 16 36 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -63.48 310.65 6.18 -57.30 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.47 Total: 37.16 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 6.07 Total: 2.16 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -0.71 Total: -73.29 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -1.67 Total: -63.00 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -63.48 6.18 -57.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163191634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.750 kcal (2) G-P(sol) polarization free energy of solvation -63.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds