Wall clock time and date at job start Fri Apr 10 2020 14:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35715 * 117.00385 * 2 1 4 4 C 1.38911 * 119.80965 * 0.02562 * 3 2 1 5 5 C 1.38260 * 120.18753 * 179.76787 * 4 3 2 6 6 O 1.35667 * 120.09798 * 180.24034 * 5 4 3 7 7 C 1.40480 * 119.80428 * 0.48697 * 5 4 3 8 8 C 1.46924 * 120.18114 * 179.76853 * 7 5 4 9 9 O 1.21681 * 119.99942 * 269.73166 * 8 7 5 10 10 N 1.34776 * 119.99801 * 89.72564 * 8 7 5 11 11 C 1.46490 * 120.00251 * 0.02562 * 10 8 7 12 12 C 1.36959 * 119.99733 * 179.97438 * 10 8 7 13 13 H 1.07993 * 119.99960 * 338.15137 * 12 10 8 14 14 C 1.38984 * 119.99946 * 158.42227 * 12 10 8 15 15 N 1.31415 * 119.99787 * 344.32798 * 14 12 10 16 16 Si 1.86799 * 119.99781 * 164.32803 * 14 12 10 17 17 H 1.48495 * 109.47324 * 90.00563 * 16 14 12 18 18 H 1.48509 * 109.46871 * 210.00331 * 16 14 12 19 19 H 1.48499 * 109.46952 * 329.99778 * 16 14 12 20 20 C 1.40436 * 119.63258 * 359.49857 * 7 5 4 21 21 O 1.35667 * 120.09292 * 180.27406 * 20 7 5 22 22 C 1.42902 * 117.00033 * 179.97438 * 21 20 7 23 23 C 1.38295 * 119.81141 * 0.24505 * 20 7 5 24 24 H 1.09007 * 109.47164 * 300.00141 * 1 2 3 25 25 H 1.08996 * 109.47420 * 60.00177 * 1 2 3 26 26 H 1.09001 * 109.47447 * 180.02562 * 1 2 3 27 27 H 1.08006 * 119.90803 * 0.02562 * 4 3 2 28 28 H 0.96706 * 113.99197 * 270.25538 * 6 5 4 29 29 H 1.09003 * 109.47193 * 271.80999 * 11 10 8 30 30 H 1.09005 * 109.47384 * 31.81054 * 11 10 8 31 31 H 1.09000 * 109.47342 * 151.81296 * 11 10 8 32 32 H 0.96998 * 119.99369 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.46841 * 299.99512 * 22 21 20 34 34 H 1.08999 * 109.47157 * 59.99461 * 22 21 20 35 35 H 1.09000 * 109.47322 * 179.97438 * 22 21 20 36 36 H 1.08001 * 119.90301 * 180.02562 * 23 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2848 2.3717 0.0005 5 6 1.9044 3.6077 0.0054 6 8 1.1600 4.7419 0.0108 7 6 3.3070 3.6856 -0.0006 8 6 3.9741 4.9947 -0.0006 9 8 4.2501 5.5368 -1.0544 10 7 4.2802 5.5951 1.1666 11 6 3.9483 4.9422 2.4352 12 6 4.9025 6.8151 1.1665 13 1 5.4579 7.1379 0.2984 14 6 4.8238 7.6354 2.2857 15 7 3.9212 7.3993 3.2112 16 14 6.0010 9.0734 2.4743 17 1 5.4071 10.2842 1.8527 18 1 6.2456 9.3270 3.9170 19 1 7.2863 8.7522 1.8034 20 6 4.0681 2.5053 -0.0008 21 8 5.4232 2.5697 -0.0009 22 6 6.1317 1.3287 -0.0005 23 6 3.4321 1.2772 -0.0002 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2065 2.3100 0.0014 28 1 0.9403 5.0723 -0.8711 29 1 2.9378 5.2212 2.7340 30 1 4.0054 3.8605 2.3131 31 1 4.6545 5.2590 3.2026 32 1 3.8666 7.9715 3.9925 33 1 5.8656 0.7588 0.8898 34 1 5.8654 0.7580 -0.8902 35 1 7.2043 1.5226 -0.0011 36 1 4.0159 0.3686 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190130935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:16 Heat of formation + Delta-G solvation = -103.883878 kcal Electronic energy + Delta-G solvation = -22729.604566 eV Core-core repulsion = 19181.192336 eV Total energy + Delta-G solvation = -3548.412231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54371 -38.98813 -38.28762 -37.36139 -34.97286 -34.46162 -31.54923 -30.06296 -29.56785 -27.33149 -27.13567 -26.09254 -24.48679 -22.57615 -21.89646 -19.56993 -18.84328 -17.03855 -16.91247 -16.77639 -16.29990 -16.14272 -15.87229 -15.41758 -14.97848 -14.68010 -14.37260 -13.96941 -13.85142 -13.35517 -13.01319 -12.48838 -12.41700 -12.15833 -11.61644 -11.51044 -11.45385 -11.29080 -11.18023 -11.02579 -10.76815 -10.52463 -10.30895 -10.27372 -10.11125 -8.91934 -8.43785 -8.26543 -7.75236 -7.54414 -6.22981 -3.74693 1.39279 1.53464 3.09798 3.22579 3.30621 3.37278 3.46653 3.72049 3.94484 4.23109 4.49234 4.92853 5.00634 5.05470 5.09830 5.14074 5.16928 5.27146 5.32168 5.44304 5.47336 5.58356 5.64715 5.76211 6.21307 6.34803 6.48770 6.54671 6.64249 7.02243 7.26051 7.35067 7.56464 7.66224 7.97292 8.24236 8.60117 9.28419 9.54525 10.12001 10.81676 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.005511 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.803911 B = 5079.121051 C = 5646.732526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.178 3.822 4 C -0.275 4.275 5 C 0.212 3.788 6 O -0.481 6.481 7 C -0.178 4.178 8 C 0.504 3.496 9 O -0.590 6.590 10 N -0.426 5.426 11 C 0.119 3.881 12 C -0.304 4.304 13 H 0.099 0.901 14 C 0.030 3.970 15 N -0.876 5.876 16 Si 0.924 3.076 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.202 3.798 21 O -0.294 6.294 22 C 0.026 3.974 23 C -0.257 4.257 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.098 0.902 27 H 0.136 0.864 28 H 0.396 0.604 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.070 0.930 32 H 0.266 0.734 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.704 -14.940 -2.953 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.132 3.868 4 C -0.294 4.294 5 C 0.165 3.835 6 O -0.292 6.292 7 C -0.183 4.183 8 C 0.291 3.709 9 O -0.476 6.476 10 N -0.142 5.142 11 C -0.025 4.025 12 C -0.432 4.432 13 H 0.117 0.883 14 C -0.173 4.173 15 N -0.515 5.515 16 Si 0.751 3.249 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.194 1.194 20 C 0.154 3.846 21 O -0.206 6.206 22 C -0.069 4.069 23 C -0.276 4.276 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.154 0.846 28 H 0.254 0.746 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.356 -14.641 -2.627 15.499 hybrid contribution 0.060 0.563 -0.099 0.574 sum -4.296 -14.078 -2.726 14.969 Atomic orbital electron populations 1.23070 0.78286 1.03702 1.01772 1.85991 1.21515 1.26888 1.88460 1.18375 0.91184 0.83641 0.93580 1.21184 1.00452 0.91336 1.16456 1.17750 0.87095 0.85471 0.93163 1.84743 1.71012 1.39904 1.33557 1.19831 0.92713 0.94211 1.11534 1.17210 0.83892 0.85020 0.84744 1.90610 1.58855 1.66980 1.31172 1.43410 1.49731 1.17287 1.03817 1.21386 1.01872 0.92202 0.87015 1.19631 1.27822 0.93322 1.02466 0.88333 1.25333 0.96879 0.98652 0.96428 1.70059 1.31166 1.39354 1.10952 0.85970 0.80705 0.80973 0.77264 1.20337 1.20880 1.19413 1.18419 0.82730 0.91565 0.91846 1.86226 1.14837 1.32113 1.87383 1.23113 0.97210 0.85368 1.01256 1.20186 0.92427 0.97228 1.17797 0.92350 0.92492 0.88361 0.84632 0.74603 0.92762 0.95990 0.91150 0.92336 0.92501 0.92587 0.88104 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.80 101.05 0.99 1.22 16 2 O -0.32 -4.04 10.48 -18.85 -0.20 -4.24 16 3 C 0.18 2.69 6.69 -39.10 -0.26 2.43 16 4 C -0.27 -4.27 8.95 -39.32 -0.35 -4.63 16 5 C 0.21 4.05 6.71 -38.73 -0.26 3.79 16 6 O -0.48 -9.13 12.95 -18.70 -0.24 -9.37 16 7 C -0.18 -3.92 3.96 -104.71 -0.41 -4.34 16 8 C 0.50 13.60 6.11 -12.74 -0.08 13.53 16 9 O -0.59 -17.77 16.79 5.21 0.09 -17.68 16 10 N -0.43 -11.91 3.01 -123.60 -0.37 -12.28 16 11 C 0.12 3.00 8.50 59.84 0.51 3.51 16 12 C -0.30 -8.98 9.28 -14.98 -0.14 -9.12 16 13 H 0.10 3.02 7.41 -52.49 -0.39 2.63 16 14 C 0.03 0.84 5.00 -17.45 -0.09 0.75 16 15 N -0.88 -24.50 10.83 55.50 0.60 -23.90 16 16 Si 0.92 21.41 29.58 -169.99 -5.03 16.38 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 C 0.20 3.88 6.26 -38.73 -0.24 3.63 16 21 O -0.29 -5.58 9.94 -18.70 -0.19 -5.77 16 22 C 0.03 0.32 9.81 101.05 0.99 1.31 16 23 C -0.26 -4.05 8.96 -39.33 -0.35 -4.40 16 24 H 0.06 0.48 7.64 -51.93 -0.40 0.09 16 25 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.14 1.72 6.26 -52.48 -0.33 1.39 16 28 H 0.40 5.75 9.06 45.56 0.41 6.17 16 29 H 0.05 1.42 7.76 -51.93 -0.40 1.02 16 30 H 0.02 0.49 6.61 -51.93 -0.34 0.15 16 31 H 0.07 1.81 6.84 -51.93 -0.36 1.46 16 32 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 34 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.14 1.79 6.27 -52.49 -0.33 1.46 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -36.30 310.34 -3.66 -39.96 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -3.30 Total: 4.53 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 0.30 Total: 7.69 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.23 Total: -36.18 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -0.54 Total: -37.06 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.30 -3.66 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190130935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.925 kcal (2) G-P(sol) polarization free energy of solvation -36.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds