Wall clock time and date at job start Fri Apr 10 2020 14:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35715 * 117.00385 * 2 1 4 4 C 1.38911 * 119.80965 * 0.02562 * 3 2 1 5 5 C 1.38260 * 120.18753 * 179.76787 * 4 3 2 6 6 O 1.35667 * 120.09798 * 180.24034 * 5 4 3 7 7 C 1.40480 * 119.80428 * 0.48697 * 5 4 3 8 8 C 1.46924 * 120.18114 * 179.76853 * 7 5 4 9 9 O 1.21681 * 119.99942 * 269.73166 * 8 7 5 10 10 N 1.34776 * 119.99801 * 89.72564 * 8 7 5 11 11 C 1.46490 * 120.00251 * 0.02562 * 10 8 7 12 12 C 1.36959 * 119.99733 * 179.97438 * 10 8 7 13 13 H 1.07993 * 119.99960 * 338.15137 * 12 10 8 14 14 C 1.38984 * 119.99946 * 158.42227 * 12 10 8 15 15 N 1.31415 * 119.99787 * 344.32798 * 14 12 10 16 16 Si 1.86799 * 119.99781 * 164.32803 * 14 12 10 17 17 H 1.48495 * 109.47324 * 90.00563 * 16 14 12 18 18 H 1.48509 * 109.46871 * 210.00331 * 16 14 12 19 19 H 1.48499 * 109.46952 * 329.99778 * 16 14 12 20 20 C 1.40436 * 119.63258 * 359.49857 * 7 5 4 21 21 O 1.35667 * 120.09292 * 180.27406 * 20 7 5 22 22 C 1.42902 * 117.00033 * 179.97438 * 21 20 7 23 23 C 1.38295 * 119.81141 * 0.24505 * 20 7 5 24 24 H 1.09007 * 109.47164 * 300.00141 * 1 2 3 25 25 H 1.08996 * 109.47420 * 60.00177 * 1 2 3 26 26 H 1.09001 * 109.47447 * 180.02562 * 1 2 3 27 27 H 1.08006 * 119.90803 * 0.02562 * 4 3 2 28 28 H 0.96706 * 113.99197 * 270.25538 * 6 5 4 29 29 H 1.09003 * 109.47193 * 271.80999 * 11 10 8 30 30 H 1.09005 * 109.47384 * 31.81054 * 11 10 8 31 31 H 1.09000 * 109.47342 * 151.81296 * 11 10 8 32 32 H 0.96998 * 119.99369 * 179.97438 * 15 14 12 33 33 H 1.09001 * 109.46841 * 299.99512 * 22 21 20 34 34 H 1.08999 * 109.47157 * 59.99461 * 22 21 20 35 35 H 1.09000 * 109.47322 * 179.97438 * 22 21 20 36 36 H 1.08001 * 119.90301 * 180.02562 * 23 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2848 2.3717 0.0005 5 6 1.9044 3.6077 0.0054 6 8 1.1600 4.7419 0.0108 7 6 3.3070 3.6856 -0.0006 8 6 3.9741 4.9947 -0.0006 9 8 4.2501 5.5368 -1.0544 10 7 4.2802 5.5951 1.1666 11 6 3.9483 4.9422 2.4352 12 6 4.9025 6.8151 1.1665 13 1 5.4579 7.1379 0.2984 14 6 4.8238 7.6354 2.2857 15 7 3.9212 7.3993 3.2112 16 14 6.0010 9.0734 2.4743 17 1 5.4071 10.2842 1.8527 18 1 6.2456 9.3270 3.9170 19 1 7.2863 8.7522 1.8034 20 6 4.0681 2.5053 -0.0008 21 8 5.4232 2.5697 -0.0009 22 6 6.1317 1.3287 -0.0005 23 6 3.4321 1.2772 -0.0002 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2065 2.3100 0.0014 28 1 0.9403 5.0723 -0.8711 29 1 2.9378 5.2212 2.7340 30 1 4.0054 3.8605 2.3131 31 1 4.6545 5.2590 3.2026 32 1 3.8666 7.9715 3.9925 33 1 5.8656 0.7588 0.8898 34 1 5.8654 0.7580 -0.8902 35 1 7.2043 1.5226 -0.0011 36 1 4.0159 0.3686 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190130935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:15 Heat of formation + Delta-G solvation = -132.887202 kcal Electronic energy + Delta-G solvation = -22730.862245 eV Core-core repulsion = 19181.192336 eV Total energy + Delta-G solvation = -3549.669909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88544 -40.27084 -39.84605 -38.98593 -36.62944 -36.25480 -33.66408 -31.46246 -30.81738 -28.49420 -28.14353 -28.00838 -26.44833 -24.09509 -23.15199 -21.30384 -20.13678 -18.96560 -18.37343 -18.22422 -17.92656 -17.42342 -17.03101 -16.85201 -16.45018 -16.10799 -15.85318 -15.66307 -15.48175 -14.95230 -14.62931 -13.88262 -13.65016 -13.41637 -13.35188 -13.25558 -13.14626 -12.67097 -12.57449 -12.48615 -12.34813 -12.14770 -12.11602 -11.97794 -11.39371 -11.03204 -10.48344 -9.71248 -9.54893 -9.13461 -8.35741 -5.98104 0.04732 0.22399 1.36727 1.40035 1.54718 1.96305 2.01972 2.26627 2.37378 2.44411 3.06233 3.12265 3.22070 3.90798 3.93954 4.09029 4.17935 4.18474 4.39725 4.43964 4.44641 4.48824 4.54635 4.71611 4.79464 4.83717 4.92524 5.05575 5.21353 5.24866 5.32746 5.43432 6.06523 6.20066 6.36057 6.46764 6.67894 7.13333 7.43681 8.02080 8.68460 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.023215 B = 0.005511 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.803911 B = 5079.121051 C = 5646.732526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.315 6.315 3 C 0.195 3.805 4 C -0.264 4.264 5 C 0.204 3.796 6 O -0.501 6.501 7 C -0.228 4.228 8 C 0.503 3.497 9 O -0.639 6.639 10 N -0.442 5.442 11 C 0.140 3.860 12 C -0.349 4.349 13 H 0.072 0.928 14 C -0.002 4.002 15 N -0.894 5.894 16 Si 0.994 3.006 17 H -0.273 1.273 18 H -0.264 1.264 19 H -0.269 1.269 20 C 0.198 3.802 21 O -0.333 6.333 22 C 0.015 3.985 23 C -0.250 4.250 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.129 0.871 27 H 0.168 0.832 28 H 0.410 0.590 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.275 0.725 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.504 -17.137 -2.288 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.227 6.227 3 C 0.148 3.852 4 C -0.283 4.283 5 C 0.157 3.843 6 O -0.314 6.314 7 C -0.233 4.233 8 C 0.292 3.708 9 O -0.528 6.528 10 N -0.158 5.158 11 C -0.004 4.004 12 C -0.477 4.477 13 H 0.090 0.910 14 C -0.204 4.204 15 N -0.532 5.532 16 Si 0.816 3.184 17 H -0.199 1.199 18 H -0.188 1.188 19 H -0.194 1.194 20 C 0.150 3.850 21 O -0.246 6.246 22 C -0.079 4.079 23 C -0.270 4.270 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.147 0.853 27 H 0.185 0.815 28 H 0.270 0.730 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.183 -16.875 -1.944 17.760 hybrid contribution 0.209 1.091 -0.337 1.161 sum -4.974 -15.784 -2.281 16.705 Atomic orbital electron populations 1.23487 0.75794 1.06159 1.02672 1.86023 1.23962 1.25198 1.87551 1.18460 0.91139 0.84388 0.91187 1.21356 1.01996 0.89854 1.15137 1.17937 0.86182 0.86601 0.93534 1.84686 1.70935 1.40648 1.35117 1.19638 0.94110 0.92503 1.17033 1.17962 0.82655 0.86499 0.83638 1.90536 1.60663 1.68915 1.32671 1.43649 1.49942 1.17228 1.04978 1.21168 1.00292 0.93237 0.85693 1.19629 1.29994 0.95180 1.02904 0.91001 1.26181 0.97961 1.00957 0.95276 1.70127 1.31594 1.40288 1.11164 0.84954 0.78163 0.77183 0.78086 1.19855 1.18809 1.19394 1.18456 0.82949 0.91710 0.91903 1.86173 1.15171 1.35846 1.87446 1.23496 0.97463 0.83747 1.03182 1.20389 0.93130 0.96839 1.16592 0.91667 0.91320 0.85313 0.81514 0.73000 0.94311 0.93728 0.92317 0.91529 0.90478 0.90559 0.86710 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.80 113.37 1.11 1.27 16 2 O -0.31 -6.70 10.48 -90.36 -0.95 -7.64 16 3 C 0.20 5.27 6.69 22.58 0.15 5.42 16 4 C -0.26 -7.60 8.95 22.44 0.20 -7.40 16 5 C 0.20 7.78 6.71 22.82 0.15 7.93 16 6 O -0.50 -19.38 12.95 -89.84 -1.16 -20.54 16 7 C -0.23 -10.28 3.96 -19.92 -0.08 -10.36 16 8 C 0.50 28.54 6.11 86.52 0.53 29.07 16 9 O -0.64 -40.91 16.79 -4.29 -0.07 -40.99 16 10 N -0.44 -25.86 3.01 -663.18 -2.00 -27.86 16 11 C 0.14 7.25 8.50 127.77 1.09 8.33 16 12 C -0.35 -21.59 9.28 84.07 0.78 -20.81 16 13 H 0.07 4.70 7.41 -2.91 -0.02 4.68 16 14 C 0.00 -0.10 5.00 84.93 0.42 0.33 16 15 N -0.89 -50.55 10.83 21.67 0.23 -50.32 16 16 Si 0.99 44.42 29.58 68.60 2.03 46.45 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 C 0.20 7.52 6.26 22.82 0.14 7.66 16 21 O -0.33 -12.74 9.94 -89.84 -0.89 -13.64 16 22 C 0.01 0.34 9.81 113.37 1.11 1.45 16 23 C -0.25 -7.27 8.96 22.43 0.20 -7.07 16 24 H 0.06 0.80 7.64 -2.38 -0.02 0.78 16 25 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 26 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.17 3.64 6.26 -2.91 -0.02 3.62 16 28 H 0.41 12.38 9.06 -74.05 -0.67 11.71 16 29 H 0.04 2.09 7.76 -2.39 -0.02 2.07 16 30 H 0.04 2.06 6.61 -2.38 -0.02 2.04 16 31 H 0.06 3.10 6.84 -2.39 -0.02 3.09 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.08 1.45 7.66 -2.39 -0.02 1.43 16 34 H 0.08 1.43 7.66 -2.39 -0.02 1.41 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.17 3.74 6.27 -2.91 -0.02 3.72 16 Total: -1.00 -82.85 310.34 3.46 -79.39 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.46 Total: 19.32 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.81 Total: 15.83 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.76 Total: -78.17 kcal Atomic # 8 Polarization: -79.73 SS G_CDS: -3.08 Total: -82.81 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -82.85 3.46 -79.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190130935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.501 kcal (2) G-P(sol) polarization free energy of solvation -82.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds