Wall clock time and date at job start Fri Apr 10 2020 14:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45202 * 109.46987 * 2 1 4 4 C 1.34229 * 116.99835 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99978 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99579 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.46654 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47312 * 54.99831 * 7 6 4 9 9 C 1.50701 * 109.47097 * 174.99929 * 7 6 4 10 10 H 1.07998 * 120.00129 * 240.00414 * 9 7 6 11 11 C 1.37880 * 119.99861 * 59.99696 * 9 7 6 12 12 N 1.31511 * 120.00346 * 0.02562 * 11 9 7 13 13 Si 1.86805 * 119.99914 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.46873 * 60.00290 * 13 11 9 15 15 H 1.48494 * 109.46914 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47008 * 300.00419 * 13 11 9 17 17 O 1.42905 * 109.47079 * 294.99660 * 7 6 4 18 18 C 1.35768 * 116.99754 * 150.00473 * 17 7 6 19 19 N 1.32165 * 119.71379 * 359.72121 * 18 17 7 20 20 C 1.31990 * 121.70089 * 179.75659 * 19 18 17 21 21 C 1.38056 * 120.93628 * 0.52761 * 20 19 18 22 22 C 1.38776 * 119.33178 * 359.74701 * 21 20 19 23 23 C 1.38802 * 118.43943 * 359.97438 * 22 21 20 24 24 O 1.35992 * 120.49171 * 180.02562 * 23 22 21 25 25 H 1.09003 * 109.47089 * 300.00611 * 1 2 3 26 26 H 1.08998 * 109.46797 * 60.00380 * 1 2 3 27 27 H 1.08999 * 109.46656 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47253 * 239.99704 * 2 1 3 29 29 H 1.08998 * 109.46831 * 119.99065 * 2 1 3 30 30 H 1.08998 * 109.47055 * 60.00153 * 6 4 3 31 31 H 1.09000 * 109.47238 * 299.99419 * 6 4 3 32 32 H 0.96993 * 120.00442 * 179.97438 * 12 11 9 33 33 H 1.07997 * 119.53716 * 180.27227 * 20 19 18 34 34 H 1.08005 * 120.33394 * 179.71977 * 21 20 19 35 35 H 1.07999 * 120.78183 * 179.97438 * 22 21 20 36 36 H 0.96697 * 114.00045 * 269.97931 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8574 -0.0010 8 1 5.7807 2.2493 -0.8425 9 6 6.0244 4.2445 -0.1255 10 1 6.6591 4.4926 -0.9633 11 6 5.7406 5.1970 0.8302 12 7 4.9679 4.8949 1.8506 13 14 6.4537 6.9167 0.6755 14 1 5.9898 7.5325 -0.5936 15 1 6.0019 7.7448 1.8223 16 1 7.9367 6.8394 0.6752 17 8 5.8944 2.2645 1.2204 18 6 7.0522 1.5568 1.1753 19 7 7.7048 1.4403 0.0319 20 6 8.8358 0.7657 -0.0555 21 6 9.3780 0.1426 1.0507 22 6 8.7237 0.2340 2.2712 23 6 7.5393 0.9549 2.3339 24 8 6.8640 1.0718 3.5085 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.5850 3.4698 0.8888 31 1 3.5845 3.4693 -0.8912 32 1 4.7686 5.5648 2.5231 33 1 9.3423 0.6966 -1.0069 34 1 10.3018 -0.4107 0.9671 35 1 9.1267 -0.2446 3.1515 36 1 6.2126 0.3732 3.6589 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225650284.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:34 Heat of formation + Delta-G solvation = -154.279726 kcal Electronic energy + Delta-G solvation = -22536.718656 eV Core-core repulsion = 18986.121098 eV Total energy + Delta-G solvation = -3550.597559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.114 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.58918 -41.20836 -38.78150 -37.95802 -37.44210 -35.12147 -32.93674 -32.62601 -32.01207 -30.13021 -28.14275 -25.16565 -24.26265 -23.82808 -23.04724 -21.54247 -19.57930 -19.28554 -18.76943 -18.06392 -17.62179 -17.43608 -17.16804 -16.52442 -16.46443 -15.90109 -15.32785 -15.14967 -14.69950 -14.48110 -14.14958 -13.93548 -13.67372 -13.41620 -13.18659 -13.06356 -12.96567 -12.83049 -12.60118 -12.47504 -12.31183 -12.19175 -11.52172 -11.48760 -11.35571 -11.06912 -10.70854 -10.56266 -10.14094 -8.95644 -8.16462 -6.41386 0.26870 0.54047 1.29274 1.40363 1.41814 1.49962 1.82028 2.38383 2.61098 2.94218 3.16001 3.34329 3.78357 3.95873 3.99533 4.07271 4.12569 4.28026 4.33444 4.45965 4.53692 4.69942 4.80406 4.87297 4.92170 5.03785 5.12983 5.15588 5.23380 5.39220 5.51808 5.68063 5.74554 6.05089 6.52107 6.73889 6.85967 7.03336 7.21979 7.38392 8.83940 Molecular weight = 281.11amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.008049 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.824323 B = 3477.858661 C = 5268.115618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.466 3.534 5 O -0.539 6.539 6 C -0.100 4.100 7 C 0.231 3.769 8 H 0.033 0.967 9 C -0.565 4.565 10 H 0.056 0.944 11 C 0.041 3.959 12 N -0.882 5.882 13 Si 0.955 3.045 14 H -0.260 1.260 15 H -0.278 1.278 16 H -0.283 1.283 17 O -0.294 6.294 18 C 0.303 3.697 19 N -0.554 5.554 20 C 0.114 3.886 21 C -0.207 4.207 22 C -0.066 4.066 23 C -0.015 4.015 24 O -0.494 6.494 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.267 0.733 33 H 0.183 0.817 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 -10.330 -1.207 10.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.311 3.689 5 O -0.429 6.429 6 C -0.138 4.138 7 C 0.177 3.823 8 H 0.051 0.949 9 C -0.602 4.602 10 H 0.074 0.926 11 C -0.163 4.163 12 N -0.518 5.518 13 Si 0.780 3.220 14 H -0.184 1.184 15 H -0.203 1.203 16 H -0.209 1.209 17 O -0.199 6.199 18 C 0.123 3.877 19 N -0.280 5.280 20 C -0.042 4.042 21 C -0.227 4.227 22 C -0.091 4.091 23 C -0.063 4.063 24 O -0.302 6.302 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.077 0.923 33 H 0.200 0.800 34 H 0.196 0.804 35 H 0.189 0.811 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.361 -9.596 -1.456 9.801 hybrid contribution 0.346 0.119 0.552 0.662 sum -1.015 -9.477 -0.904 9.574 Atomic orbital electron populations 1.21811 0.89856 1.04473 1.03704 1.23285 0.97497 0.79660 1.02044 1.86554 1.24167 1.33610 1.84015 1.24501 0.80358 0.93390 0.70637 1.90561 1.61069 1.44124 1.47164 1.21720 0.96063 0.89151 1.06841 1.19555 0.88831 0.91780 0.82161 0.94914 1.21476 1.32648 0.95804 1.10246 0.92604 1.25739 0.94229 1.02239 0.94122 1.69961 1.35280 1.35333 1.11186 0.85675 0.78412 0.79530 0.78382 1.18430 1.20323 1.20877 1.86428 1.33529 1.61095 1.38865 1.20959 0.87744 0.89292 0.89683 1.67429 1.11888 1.21939 1.26773 1.23099 0.89716 0.90646 1.00719 1.22187 1.03817 1.04857 0.91863 1.21980 0.92226 0.94717 1.00209 1.18834 0.97025 1.05586 0.84811 1.84863 1.56124 1.54666 1.34557 0.91495 0.91077 0.87719 0.91556 0.92132 0.86141 0.86658 0.92341 0.80023 0.80363 0.81120 0.75257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 10.29 71.98 0.74 -2.05 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.37 -13.76 10.22 -51.41 -0.53 -14.28 16 4 C 0.47 20.77 7.84 71.24 0.56 21.33 16 5 O -0.54 -26.20 15.17 27.03 0.41 -25.79 16 6 C -0.10 -4.82 5.22 29.85 0.16 -4.66 16 7 C 0.23 12.45 1.59 29.85 0.05 12.50 16 8 H 0.03 1.82 6.79 -2.39 -0.02 1.81 16 9 C -0.56 -31.78 8.90 25.60 0.23 -31.55 16 10 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 11 C 0.04 2.26 5.24 84.66 0.44 2.70 16 12 N -0.88 -49.74 10.93 21.45 0.23 -49.51 16 13 Si 0.96 43.47 29.54 68.60 2.03 45.49 16 14 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 O -0.29 -16.32 8.18 -66.95 -0.55 -16.87 16 18 C 0.30 15.13 7.46 84.91 0.63 15.76 16 19 N -0.55 -25.61 8.64 -308.56 -2.67 -28.28 16 20 C 0.11 3.91 11.17 84.63 0.95 4.85 16 21 C -0.21 -5.76 10.10 22.36 0.23 -5.53 16 22 C -0.07 -2.07 10.12 22.53 0.23 -1.84 16 23 C -0.01 -0.63 6.75 22.67 0.15 -0.47 16 24 O -0.49 -20.20 13.31 -79.70 -1.06 -21.26 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 29 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 30 H 0.12 6.29 6.22 -2.39 -0.01 6.27 16 31 H 0.12 5.06 8.14 -2.39 -0.02 5.04 16 32 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.18 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.39 12.42 9.06 -74.06 -0.67 11.75 16 Total: -1.00 -74.18 319.41 3.11 -71.07 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.44 Total: 26.54 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 4.81 Total: 12.88 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: -2.43 Total: -77.78 kcal Atomic # 8 Polarization: -76.48 SS G_CDS: -1.72 Total: -78.20 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.18 3.11 -71.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225650284.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.211 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds