Wall clock time and date at job start Fri Apr 10 2020 14:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86801 * 119.99784 * 2 1 4 4 H 1.48499 * 109.46958 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47136 * 300.00111 * 3 2 1 6 6 H 1.48499 * 109.46867 * 60.00203 * 3 2 1 7 7 C 1.38953 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00130 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99904 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00235 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00109 * 179.97438 * 10 9 7 13 13 C 1.50696 * 109.47175 * 179.97438 * 12 10 9 14 14 C 1.38325 * 119.87480 * 90.00415 * 13 12 10 15 15 C 1.38018 * 120.11856 * 179.97438 * 14 13 12 16 16 C 1.39336 * 119.88184 * 359.97438 * 15 14 13 17 17 C 1.48385 * 120.12611 * 179.97438 * 16 15 14 18 18 C 1.39336 * 120.12611 * 180.02562 * 17 16 15 19 19 C 1.38018 * 119.88184 * 180.02562 * 18 17 16 20 20 C 1.38325 * 120.11852 * 359.97438 * 19 18 17 21 21 C 1.38323 * 120.24425 * 0.26101 * 20 19 18 22 22 C 1.38017 * 120.11916 * 359.48375 * 21 20 19 23 23 C 1.39348 * 119.75465 * 0.25348 * 16 15 14 24 24 C 1.38012 * 119.87390 * 359.49361 * 23 16 15 25 25 H 0.96996 * 120.00493 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00431 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.46651 * 59.99853 * 12 10 9 28 28 H 1.08997 * 109.47244 * 300.00684 * 12 10 9 29 29 H 1.07997 * 119.94059 * 359.97438 * 14 13 12 30 30 H 1.08004 * 120.06312 * 179.97438 * 15 14 13 31 31 H 1.08004 * 120.05503 * 0.02562 * 18 17 16 32 32 H 1.07997 * 119.94085 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.87397 * 179.97438 * 20 19 18 34 34 H 1.07998 * 119.93885 * 179.74853 * 21 20 19 35 35 H 1.08001 * 120.05836 * 180.24189 * 22 21 20 36 36 H 1.08003 * 120.05757 * 179.74578 * 23 16 15 37 37 H 1.08005 * 119.93908 * 180.25699 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5579 -0.0011 12 6 1.2439 -4.8630 -0.0022 13 6 2.2232 -6.0084 -0.0027 14 6 2.6709 -6.5326 1.1965 15 6 3.5674 -7.5820 1.2019 16 6 4.0211 -8.1136 -0.0035 17 6 4.9854 -9.2414 -0.0040 18 6 5.4395 -9.7727 -1.2094 19 6 6.3360 -10.8221 -1.2040 20 6 6.7841 -11.3460 -0.0048 21 6 6.3329 -10.8257 1.1948 22 6 5.4404 -9.7729 1.2010 23 6 3.5704 -7.5784 -1.2086 24 6 2.6699 -6.5326 -1.2022 25 1 -0.4851 0.8400 0.0004 26 1 0.3535 -2.3907 -0.0016 27 1 0.6176 -4.9205 -0.8925 28 1 0.6168 -4.9209 0.8875 29 1 2.3183 -6.1201 2.1302 30 1 3.9167 -7.9904 2.1388 31 1 5.0906 -9.3641 -2.1462 32 1 6.6889 -11.2343 -2.1377 33 1 7.4853 -12.1674 -0.0052 34 1 6.6829 -11.2412 2.1282 35 1 5.0918 -9.3648 2.1382 36 1 3.9221 -7.9840 -2.1457 37 1 2.3168 -6.1197 -2.1356 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082555102.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:32 Heat of formation + Delta-G solvation = 3.052485 kcal Electronic energy + Delta-G solvation = -19861.187636 eV Core-core repulsion = 16760.554528 eV Total energy + Delta-G solvation = -3100.633108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.88096 -38.70331 -37.62070 -34.05842 -33.20799 -31.46216 -31.27624 -30.40188 -30.23645 -26.97104 -24.65173 -23.47701 -22.74634 -21.38362 -20.62531 -19.18209 -17.92251 -17.52073 -15.96712 -15.85789 -15.48983 -15.29942 -14.50107 -14.37579 -14.23589 -13.87205 -13.79298 -13.48071 -13.30909 -12.97609 -12.91142 -12.60938 -11.94200 -11.60174 -11.58454 -11.38385 -11.29009 -11.03180 -10.86137 -10.51237 -10.34636 -10.22533 -9.54088 -9.53031 -9.07265 -8.67131 -8.43758 -7.97755 -7.78010 -6.42521 -3.83378 0.74349 1.28581 1.69321 2.01221 3.15758 3.26460 3.33988 3.64016 3.90192 4.12828 4.23717 4.61915 4.67967 4.82644 4.91739 5.07039 5.12038 5.19618 5.26223 5.27612 5.33075 5.33201 5.63651 5.70484 5.83217 5.89522 5.95924 5.98194 6.13913 6.27584 6.27624 6.36089 6.38758 6.44211 6.64670 6.83044 6.88355 6.94803 7.23236 7.54835 8.05112 8.59900 9.16996 9.53394 10.04866 10.75168 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038037 B = 0.002858 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.951975 B = 9794.980126 C = 9932.569914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.563 5.563 10 C 0.444 3.556 11 O -0.587 6.587 12 C -0.102 4.102 13 C -0.033 4.033 14 C -0.106 4.106 15 C -0.106 4.106 16 C -0.067 4.067 17 C -0.030 4.030 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.116 4.116 23 C -0.106 4.106 24 C -0.106 4.106 25 H 0.271 0.729 26 H 0.393 0.607 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 -20.014 -0.009 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.200 5.200 10 C 0.229 3.771 11 O -0.472 6.472 12 C -0.142 4.142 13 C -0.034 4.034 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.067 4.067 17 C -0.030 4.030 18 C -0.134 4.134 19 C -0.136 4.136 20 C -0.147 4.147 21 C -0.136 4.136 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.124 4.124 25 H 0.081 0.919 26 H 0.226 0.774 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.108 -19.836 -0.009 20.755 hybrid contribution -0.204 0.987 0.000 1.008 sum 5.905 -18.849 -0.010 19.752 Atomic orbital electron populations 1.69615 1.05929 1.28075 1.50661 1.25265 0.95637 0.99725 0.97333 0.85810 0.79736 0.81148 0.77726 1.19217 1.20731 1.20726 1.19763 0.93399 0.82252 1.47452 0.87903 1.41900 1.09226 1.04588 1.64239 1.19746 0.88261 0.84535 0.84530 1.90551 1.13813 1.87219 1.55589 1.20650 0.97276 0.92420 1.03849 1.19514 0.96388 0.94297 0.93157 1.20917 0.97613 0.96073 0.97782 1.21080 0.97562 0.96805 0.96988 1.18648 0.98020 0.96294 0.93743 1.18878 0.95958 0.94789 0.93341 1.21271 0.97761 0.96696 0.97665 1.21076 0.97669 0.96764 0.98086 1.21163 1.00503 1.00406 0.92648 1.21075 0.97704 0.96735 0.98082 1.21272 0.97790 0.96660 0.97669 1.21081 0.97526 0.96823 0.96993 1.20916 0.97583 0.96123 0.97777 0.91905 0.77376 0.89347 0.89341 0.86023 0.86147 0.85700 0.86069 0.86292 0.86070 0.85700 0.86145 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.44 10.49 7.78 -10.98 -0.09 10.41 16 11 O -0.59 -16.15 15.61 5.55 0.09 -16.07 16 12 C -0.10 -1.78 5.82 -29.04 -0.17 -1.95 16 13 C -0.03 -0.57 4.38 -104.56 -0.46 -1.02 16 14 C -0.11 -1.69 9.68 -39.63 -0.38 -2.07 16 15 C -0.11 -1.53 9.43 -39.25 -0.37 -1.91 16 16 C -0.07 -0.96 5.88 -104.90 -0.62 -1.58 16 17 C -0.03 -0.38 5.88 -104.90 -0.62 -0.99 16 18 C -0.12 -1.31 9.43 -39.25 -0.37 -1.68 16 19 C -0.12 -1.15 10.03 -39.63 -0.40 -1.54 16 20 C -0.13 -1.20 10.04 -39.52 -0.40 -1.59 16 21 C -0.12 -1.15 10.03 -39.63 -0.40 -1.54 16 22 C -0.12 -1.31 9.43 -39.25 -0.37 -1.68 16 23 C -0.11 -1.53 9.43 -39.25 -0.37 -1.90 16 24 C -0.11 -1.69 9.68 -39.63 -0.38 -2.07 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 27 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 28 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 29 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.12 1.43 6.21 -52.48 -0.33 1.10 16 31 H 0.13 1.24 6.21 -52.48 -0.33 0.91 16 32 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 1.24 6.21 -52.49 -0.33 0.92 16 36 H 0.12 1.43 6.21 -52.48 -0.33 1.10 16 37 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 321.57 15.07 4.85 4.85 Total: -1.00 -32.41 321.57 -9.14 -41.55 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -4.09 Total: 10.90 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -5.63 Total: -19.16 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.67 Total: -38.16 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.07 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.41 -9.14 -41.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082555102.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.603 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds