Wall clock time and date at job start Fri Apr 10 2020 14:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00417 * 2 1 4 4 H 1.48504 * 109.47082 * 240.00464 * 3 2 1 5 5 H 1.48506 * 109.46639 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47410 * 120.00084 * 3 2 1 7 7 C 1.37882 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99775 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47294 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00242 * 180.02562 * 10 9 7 12 12 O 1.21566 * 120.00176 * 0.02562 * 11 10 9 13 13 C 1.47726 * 119.99726 * 180.02562 * 11 10 9 14 14 C 1.39709 * 120.01921 * 179.97438 * 13 11 10 15 15 C 1.37666 * 119.97071 * 180.02562 * 14 13 11 16 16 C 1.39503 * 120.02784 * 0.02562 * 15 14 13 17 17 C 1.48276 * 119.97625 * 179.97438 * 16 15 14 18 18 C 1.39400 * 120.12726 * 179.97438 * 17 16 15 19 19 C 1.37998 * 119.87388 * 180.02562 * 18 17 16 20 20 C 1.38342 * 120.12652 * 0.02562 * 19 18 17 21 21 C 1.38327 * 120.25412 * 0.27554 * 20 19 18 22 22 C 1.38009 * 120.13032 * 359.44544 * 21 20 19 23 23 C 1.39496 * 120.04779 * 0.27148 * 16 15 14 24 24 C 1.37671 * 120.02463 * 359.45057 * 23 16 15 25 25 H 0.97002 * 119.99794 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47179 * 60.00189 * 9 7 2 27 27 H 1.08994 * 109.47775 * 300.00494 * 9 7 2 28 28 H 0.97004 * 120.00210 * 0.02562 * 10 9 7 29 29 H 1.07997 * 120.01418 * 0.02562 * 14 13 11 30 30 H 1.08002 * 119.98673 * 179.97438 * 15 14 13 31 31 H 1.08002 * 120.06262 * 0.02562 * 18 17 16 32 32 H 1.07999 * 119.94047 * 180.02562 * 19 18 17 33 33 H 1.08002 * 119.86974 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.93974 * 179.71804 * 21 20 19 35 35 H 1.07992 * 120.06617 * 180.27406 * 22 21 20 36 36 H 1.07998 * 119.99022 * 179.70293 * 23 16 15 37 37 H 1.08000 * 120.01518 * 180.27687 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1031 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5584 -5.1055 -0.0020 13 6 2.7136 -6.0062 -0.0005 14 6 2.2484 -7.3236 -0.0005 15 6 3.1439 -8.3692 0.0006 16 6 4.5153 -8.1137 0.0022 17 6 5.4788 -9.2408 0.0039 18 6 6.8499 -8.9892 0.0050 19 6 7.7420 -10.0420 0.0061 20 6 7.2779 -11.3453 0.0055 21 6 5.9185 -11.6010 -0.0018 22 6 5.0169 -10.5561 0.0029 23 6 4.9809 -6.7988 0.0085 24 6 4.0872 -5.7515 0.0016 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8896 28 1 3.1566 -3.4356 -0.0002 29 1 1.1867 -7.5215 -0.0013 30 1 2.7845 -9.3876 0.0010 31 1 7.2133 -7.9721 0.0050 32 1 8.8044 -9.8483 0.0073 33 1 7.9797 -12.1662 0.0060 34 1 5.5618 -12.6204 -0.0068 35 1 3.9559 -10.7570 0.0016 36 1 6.0428 -6.6021 0.0146 37 1 4.4479 -4.7335 0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243080341.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:59 Heat of formation + Delta-G solvation = -14.126145 kcal Electronic energy + Delta-G solvation = -19696.155696 eV Core-core repulsion = 16594.777667 eV Total energy + Delta-G solvation = -3101.378029 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27987 -40.26788 -38.76901 -36.25871 -34.53556 -33.70724 -32.48663 -31.45914 -30.43658 -28.97676 -25.70179 -24.59097 -24.14031 -22.53778 -22.23091 -21.24242 -19.64947 -18.42200 -17.69735 -17.22761 -16.89571 -16.48136 -16.21200 -15.98026 -15.42111 -15.18114 -14.95271 -14.79987 -14.49346 -14.39940 -14.07855 -13.97222 -13.87148 -13.18530 -13.06075 -12.95865 -12.68600 -12.38536 -12.24870 -12.01872 -11.59740 -11.52537 -10.96681 -10.81666 -10.71917 -10.04278 -9.93035 -9.83096 -9.01531 -8.30352 -6.47705 -0.58772 0.37173 0.52958 0.68345 1.42802 1.47339 1.55494 1.91104 2.28323 2.50541 2.74697 3.04373 3.12871 3.52223 3.69166 3.85540 3.92129 4.13324 4.15371 4.27117 4.34075 4.38471 4.55728 4.72412 4.74347 4.95048 5.00059 5.08308 5.18570 5.19414 5.26015 5.27251 5.36816 5.42191 5.58265 5.63723 5.64689 5.74580 5.80995 5.84865 6.10406 6.61161 6.80658 7.19556 7.36746 8.81793 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.034046 B = 0.002852 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.229759 B = 9813.946486 C =10621.029089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.699 5.699 11 C 0.535 3.465 12 O -0.601 6.601 13 C -0.148 4.148 14 C -0.070 4.070 15 C -0.118 4.118 16 C -0.022 4.022 17 C -0.070 4.070 18 C -0.116 4.116 19 C -0.126 4.126 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.080 4.080 25 H 0.270 0.730 26 H -0.010 1.010 27 H -0.010 1.010 28 H 0.408 0.592 29 H 0.126 0.874 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.221 -22.050 0.018 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.324 3.676 12 O -0.484 6.484 13 C -0.151 4.151 14 C -0.089 4.089 15 C -0.136 4.136 16 C -0.023 4.023 17 C -0.070 4.070 18 C -0.134 4.134 19 C -0.144 4.144 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.137 4.137 23 C -0.133 4.133 24 C -0.099 4.099 25 H 0.078 0.922 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.245 0.755 29 H 0.144 0.856 30 H 0.172 0.828 31 H 0.158 0.842 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 18.224 -22.039 0.017 28.598 hybrid contribution -0.250 1.169 -0.001 1.195 sum 17.974 -20.870 0.016 27.543 Atomic orbital electron populations 1.70137 1.08312 1.28723 1.49692 1.26097 0.95813 1.03978 0.93717 0.85176 0.77903 0.76384 0.79571 1.18558 1.21049 1.18545 1.21562 0.94339 0.90389 1.53325 0.89682 1.18618 0.88665 0.84116 0.94336 1.46139 1.11378 1.05312 1.72021 1.19016 0.88287 0.84037 0.76231 1.90687 1.18694 1.85649 1.53394 1.20016 0.93967 0.93220 1.07943 1.21236 1.00779 0.91053 0.95878 1.21361 0.91928 0.99653 1.00662 1.19205 0.92862 0.93196 0.97007 1.18893 0.93105 0.92370 1.02598 1.21551 0.91939 1.00768 0.99130 1.21437 1.00764 0.92560 0.99651 1.21630 0.96095 0.97608 0.98485 1.21418 0.93497 0.99794 0.99765 1.21539 1.01000 0.91777 0.99359 1.21426 1.01038 0.90769 1.00086 1.21461 0.90906 1.00994 0.96502 0.92167 0.99202 0.99211 0.75530 0.85624 0.82776 0.84240 0.83671 0.83742 0.83828 0.84679 0.82141 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.56 -30.81 9.28 25.60 0.24 -30.57 16 8 H 0.09 4.20 7.60 -2.92 -0.02 4.18 16 9 C 0.27 15.03 5.43 85.63 0.46 15.50 16 10 N -0.70 -31.53 5.50 -469.83 -2.58 -34.11 16 11 C 0.54 23.86 7.77 86.75 0.67 24.53 16 12 O -0.60 -32.08 16.33 -3.92 -0.06 -32.14 16 13 C -0.15 -4.99 5.88 -20.06 -0.12 -5.10 16 14 C -0.07 -2.11 9.58 22.49 0.22 -1.89 16 15 C -0.12 -2.70 9.41 22.44 0.21 -2.49 16 16 C -0.02 -0.47 5.88 -20.00 -0.12 -0.59 16 17 C -0.07 -1.25 5.88 -20.05 -0.12 -1.37 16 18 C -0.12 -1.73 9.43 22.49 0.21 -1.52 16 19 C -0.13 -1.53 10.03 22.24 0.22 -1.31 16 20 C -0.12 -1.36 10.04 22.32 0.22 -1.14 16 21 C -0.13 -1.59 10.03 22.24 0.22 -1.37 16 22 C -0.12 -1.86 9.43 22.50 0.21 -1.64 16 23 C -0.12 -2.39 9.41 22.44 0.21 -2.18 16 24 C -0.08 -2.07 9.52 22.49 0.21 -1.86 16 25 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 26 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 27 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 28 H 0.41 15.12 6.34 -92.71 -0.59 14.54 16 29 H 0.13 3.96 7.64 -2.91 -0.02 3.94 16 30 H 0.15 2.61 6.19 -2.91 -0.02 2.59 16 31 H 0.14 1.60 6.19 -2.91 -0.02 1.58 16 32 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 33 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 34 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.14 1.74 6.19 -2.91 -0.02 1.72 16 36 H 0.16 2.26 6.19 -2.91 -0.02 2.24 16 37 H 0.14 3.24 6.39 -2.91 -0.02 3.22 16 Total: -1.00 -75.05 319.91 3.61 -71.44 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.52 Total: 19.09 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 3.43 Total: -12.34 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -2.30 Total: -90.49 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.06 Total: -32.14 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -75.05 3.61 -71.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243080341.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.314 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds