Wall clock time and date at job start Fri Apr 10 2020 14:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86798 * 120.00360 * 2 1 4 4 H 1.48494 * 109.47555 * 240.00015 * 3 2 1 5 5 H 1.48506 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47056 * 119.99547 * 3 2 1 7 7 C 1.38652 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00254 * 180.02562 * 7 2 1 9 9 O 1.34818 * 119.99911 * 0.02562 * 7 2 1 10 10 C 1.35662 * 116.99770 * 185.06191 * 9 7 2 11 11 C 1.38763 * 120.13780 * 354.40661 * 10 9 7 12 12 C 1.38109 * 120.04464 * 180.02562 * 11 10 9 13 13 C 1.38437 * 120.33082 * 359.95153 * 12 11 10 14 14 C 1.38016 * 120.27114 * 0.02562 * 13 12 11 15 15 C 1.39288 * 119.94047 * 0.02562 * 14 13 12 16 16 C 1.48299 * 120.15796 * 180.02562 * 15 14 13 17 17 C 1.39818 * 120.53865 * 309.68088 * 16 15 14 18 18 C 1.38403 * 118.30283 * 179.73501 * 17 16 15 19 19 C 1.38327 * 119.28750 * 0.55774 * 18 17 16 20 20 C 1.50700 * 119.47684 * 179.67637 * 19 18 17 21 21 C 1.53001 * 117.50094 * 343.76971 * 20 19 18 22 22 C 1.53002 * 117.50239 * 275.11228 * 20 19 18 23 23 N 1.31890 * 121.04384 * 359.70034 * 19 18 17 24 24 C 1.31740 * 121.85667 * 0.02562 * 23 19 18 25 25 H 0.97003 * 119.99354 * 0.02562 * 1 2 3 26 26 H 1.07994 * 119.97535 * 0.02562 * 11 10 9 27 27 H 1.08007 * 119.83398 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.86559 * 179.74777 * 13 12 11 29 29 H 1.07998 * 120.03302 * 179.97438 * 14 13 12 30 30 H 1.07993 * 120.84748 * 359.97438 * 17 16 15 31 31 H 1.07994 * 120.35320 * 180.25466 * 18 17 16 32 32 H 1.09005 * 115.54711 * 129.43671 * 20 19 18 33 33 H 1.09000 * 117.49733 * 359.97438 * 21 20 19 34 34 H 1.09000 * 117.50285 * 145.01837 * 21 20 19 35 35 H 1.09002 * 117.49589 * 214.98332 * 22 20 19 36 36 H 1.08999 * 117.49299 * 359.97188 * 22 20 19 37 37 H 1.07996 * 119.70728 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6963 1.2126 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3346 -2.3683 0.0005 10 6 2.0694 -3.5037 0.1077 11 6 3.4555 -3.4404 0.0944 12 6 4.2016 -4.5975 0.2031 13 6 3.5738 -5.8251 0.3268 14 6 2.1960 -5.9035 0.3421 15 6 1.4324 -4.7438 0.2322 16 6 -0.0484 -4.8223 0.2486 17 6 -0.7218 -5.7151 -0.5906 18 6 -2.1041 -5.7540 -0.5333 19 6 -2.7694 -4.9081 0.3357 20 6 -4.2748 -4.9417 0.3963 21 6 -5.0133 -5.6242 -0.7569 22 6 -5.0420 -4.0995 -0.6249 23 7 -2.1071 -4.0723 1.1118 24 6 -0.7916 -4.0032 1.0964 25 1 -0.4849 0.8401 -0.0004 26 1 3.9512 -2.4857 -0.0011 27 1 5.2803 -4.5443 0.1919 28 1 4.1646 -6.7256 0.4072 29 1 1.7102 -6.8632 0.4384 30 1 -0.1771 -6.3606 -1.2636 31 1 -2.6576 -6.4340 -1.1639 32 1 -4.7031 -5.0362 1.3942 33 1 -4.4102 -6.0485 -1.5596 34 1 -5.9276 -6.1673 -0.5178 35 1 -5.9752 -3.6400 -0.2990 36 1 -4.4578 -3.5207 -1.3403 37 1 -0.2846 -3.3061 1.7471 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238854348.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:03 Heat of formation + Delta-G solvation = 39.686053 kcal Electronic energy + Delta-G solvation = -20855.032990 eV Core-core repulsion = 17755.988432 eV Total energy + Delta-G solvation = -3099.044557 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48589 -40.49552 -38.22244 -37.71430 -34.35357 -34.05747 -32.60005 -30.80970 -29.83867 -27.37034 -25.55188 -24.71939 -23.21897 -23.03858 -22.58499 -21.47980 -19.81898 -18.92560 -17.75451 -17.44370 -16.84134 -16.32175 -16.26449 -15.85993 -15.59441 -15.39635 -15.16911 -14.81733 -14.61810 -14.27387 -14.01366 -13.55673 -13.41601 -13.07603 -12.72022 -12.51176 -12.43349 -12.36021 -12.18191 -12.17124 -11.55916 -11.36130 -11.21435 -10.83489 -10.77349 -10.42448 -9.99369 -9.38441 -8.83848 -8.45722 -6.13710 -0.07161 0.37779 0.69141 0.80972 1.32642 1.43402 1.48462 2.15598 2.68217 2.83679 2.92729 3.18556 3.37280 3.47687 3.78819 3.87000 3.98647 4.04209 4.09602 4.19103 4.24021 4.30645 4.34796 4.55164 4.63577 4.75543 4.77512 4.87423 4.91264 5.04901 5.09200 5.12531 5.18783 5.26219 5.31177 5.34855 5.62252 5.67737 5.75501 5.84572 6.01484 6.21675 6.97529 7.13005 7.77971 8.74842 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012830 B = 0.006222 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.925702 B = 4499.171108 C = 6452.100230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.018 4.018 3 Si 1.014 2.986 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.416 4.416 8 H 0.101 0.899 9 O -0.214 6.214 10 C 0.124 3.876 11 C -0.248 4.248 12 C -0.066 4.066 13 C -0.190 4.190 14 C -0.056 4.056 15 C -0.143 4.143 16 C -0.083 4.083 17 C -0.070 4.070 18 C -0.165 4.165 19 C 0.129 3.871 20 C -0.126 4.126 21 C -0.138 4.138 22 C -0.175 4.175 23 N -0.509 5.509 24 C 0.115 3.885 25 H 0.270 0.730 26 H 0.120 0.880 27 H 0.146 0.854 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.072 0.928 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -13.457 -2.027 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.217 4.217 3 Si 0.834 3.166 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.118 0.882 9 O -0.119 6.119 10 C 0.072 3.928 11 C -0.267 4.267 12 C -0.084 4.084 13 C -0.208 4.208 14 C -0.074 4.074 15 C -0.145 4.145 16 C -0.085 4.085 17 C -0.096 4.096 18 C -0.184 4.184 19 C -0.009 4.009 20 C -0.145 4.145 21 C -0.175 4.175 22 C -0.213 4.213 23 N -0.218 5.218 24 C -0.041 4.041 25 H 0.078 0.922 26 H 0.137 0.863 27 H 0.164 0.836 28 H 0.173 0.827 29 H 0.166 0.834 30 H 0.180 0.820 31 H 0.190 0.810 32 H 0.138 0.862 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.841 -12.716 -1.477 13.112 hybrid contribution 0.970 1.121 -0.271 1.507 sum -1.871 -11.595 -1.747 11.874 Atomic orbital electron populations 1.70221 1.07899 1.28547 1.48145 1.26507 0.96713 1.02554 0.95915 0.84713 0.77409 0.74629 0.79890 1.18137 1.19989 1.18226 1.21762 0.92459 0.81534 1.53431 0.88159 1.83967 1.35379 1.12151 1.80416 1.19941 0.91452 0.87532 0.93831 1.21272 0.92829 1.00467 1.12158 1.21269 1.00399 0.91468 0.95262 1.21123 0.93997 0.98215 1.07478 1.21148 0.94069 0.95994 0.96197 1.18091 0.91226 0.91603 1.13600 1.19723 0.93496 0.97772 0.97522 1.21939 0.94524 0.96814 0.96298 1.22161 0.94414 1.01233 1.00616 1.20937 0.95834 0.91614 0.92465 1.20806 0.87181 1.09000 0.97474 1.23233 1.02318 0.93889 0.98093 1.23006 1.01836 0.95299 1.01133 1.67247 1.09382 1.20734 1.24451 1.22447 0.89104 0.95631 0.96948 0.92157 0.86260 0.83602 0.82725 0.83395 0.81968 0.80993 0.86154 0.87320 0.85229 0.86776 0.90936 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.87 13.67 21.61 0.30 -56.58 16 2 C -0.02 -1.05 5.49 84.83 0.47 -0.59 16 3 Si 1.01 43.53 29.55 68.60 2.03 45.56 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.42 -24.14 9.49 67.92 0.64 -23.50 16 8 H 0.10 5.34 5.21 -2.91 -0.02 5.32 16 9 O -0.21 -12.66 8.13 -21.65 -0.18 -12.83 16 10 C 0.12 6.10 6.57 22.81 0.15 6.25 16 11 C -0.25 -10.59 9.16 22.36 0.20 -10.39 16 12 C -0.07 -2.15 10.03 22.29 0.22 -1.93 16 13 C -0.19 -5.48 10.03 22.26 0.22 -5.26 16 14 C -0.06 -1.81 9.54 22.47 0.21 -1.60 16 15 C -0.14 -6.03 5.51 -19.93 -0.11 -6.14 16 16 C -0.08 -3.51 5.28 -19.95 -0.11 -3.61 16 17 C -0.07 -2.34 9.69 22.69 0.22 -2.12 16 18 C -0.17 -5.00 9.35 22.33 0.21 -4.79 16 19 C 0.13 4.65 6.46 42.57 0.28 4.92 16 20 C -0.13 -3.48 6.21 -11.54 -0.07 -3.55 16 21 C -0.14 -2.57 9.79 30.62 0.30 -2.27 16 22 C -0.18 -4.40 10.24 30.62 0.31 -4.09 16 23 N -0.51 -23.10 10.26 -182.96 -1.88 -24.97 16 24 C 0.12 5.56 9.97 84.98 0.85 6.41 16 25 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.12 5.19 5.64 -2.91 -0.02 5.17 16 27 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 29 H 0.15 3.72 8.05 -2.91 -0.02 3.70 16 30 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.17 3.59 6.23 -2.91 -0.02 3.58 16 32 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 33 H 0.11 1.79 6.38 -2.39 -0.02 1.78 16 34 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.12 6.35 7.70 -2.91 -0.02 6.33 16 Total: -1.00 -75.54 320.00 5.37 -70.17 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 1.09 Total: 30.91 kcal Atomic # 6 Polarization: -56.26 SS G_CDS: 4.00 Total: -52.26 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -1.58 Total: -81.55 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.18 Total: -12.83 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -75.54 5.37 -70.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238854348.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.858 kcal (2) G-P(sol) polarization free energy of solvation -75.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds