Wall clock time and date at job start Fri Apr 10 2020 14:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86792 * 120.00213 * 2 1 4 4 H 1.48498 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47194 * 299.99834 * 3 2 1 6 6 H 1.48501 * 109.47506 * 59.99857 * 3 2 1 7 7 C 1.39929 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99723 * 162.72591 * 7 2 1 9 9 C 1.41423 * 119.99837 * 342.72900 * 7 2 1 10 10 C 1.40793 * 120.19025 * 334.80465 * 9 7 2 11 11 C 1.37679 * 119.99903 * 180.02562 * 10 9 7 12 12 C 1.38434 * 120.38017 * 0.02562 * 11 10 9 13 13 C 1.39717 * 120.37513 * 359.97438 * 12 11 10 14 14 C 1.48357 * 120.00145 * 180.28013 * 13 12 11 15 15 C 1.39360 * 119.98537 * 179.45029 * 14 13 12 16 16 C 1.38005 * 119.93965 * 179.82101 * 15 14 13 17 17 C 1.38727 * 120.04275 * 0.53675 * 16 15 14 18 18 C 1.39365 * 120.35175 * 359.62070 * 17 16 15 19 19 C 1.38428 * 119.66398 * 0.13356 * 18 17 16 20 20 O 1.35973 * 120.78830 * 180.29011 * 18 17 16 21 21 C 1.42949 * 117.75220 * 339.76678 * 20 18 17 22 22 C 1.53531 * 108.78263 * 49.40440 * 21 20 18 23 23 N 1.40301 * 119.94326 * 179.49864 * 17 16 15 24 24 C 1.38790 * 119.99430 * 0.02562 * 13 12 11 25 25 H 0.97004 * 119.99965 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99760 * 0.04537 * 10 9 7 27 27 H 1.08001 * 119.81319 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.81015 * 180.02562 * 12 11 10 29 29 H 1.08009 * 120.03102 * 0.06045 * 15 14 13 30 30 H 1.08009 * 119.97857 * 180.27488 * 16 15 14 31 31 H 1.08008 * 120.01351 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.58778 * 169.19959 * 21 20 18 33 33 H 1.09007 * 109.58419 * 289.61924 * 21 20 18 34 34 H 1.09004 * 109.83140 * 61.31664 * 22 21 20 35 35 H 1.09004 * 109.83500 * 182.26220 * 22 21 20 36 36 H 0.97004 * 121.12978 * 346.25989 * 23 17 16 37 37 H 1.08000 * 120.18681 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7023 1.3462 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0514 -1.2331 -0.2772 9 6 1.3485 -2.4088 0.3647 10 6 0.2195 -2.3677 1.2049 11 6 -0.4191 -3.5354 1.5574 12 6 0.0425 -4.7542 1.0906 13 6 1.1615 -4.8133 0.2560 14 6 1.6453 -6.1234 -0.2444 15 6 2.7545 -6.1809 -1.0861 16 6 3.2061 -7.4005 -1.5481 17 6 2.5498 -8.5673 -1.1842 18 6 1.4379 -8.5176 -0.3455 19 6 0.9870 -7.2954 0.1228 20 8 0.7915 -9.6562 0.0216 21 6 0.9798 -10.8190 -0.7882 22 6 2.4840 -11.0226 -1.0188 23 7 3.0043 -9.8050 -1.6635 24 6 1.8171 -3.6458 -0.1091 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1457 -1.4202 1.5726 27 1 -1.2846 -3.5005 2.2024 28 1 -0.4657 -5.6645 1.3725 29 1 3.2627 -5.2722 -1.3735 30 1 4.0684 -7.4462 -2.1969 31 1 0.1255 -7.2503 0.7727 32 1 0.5671 -11.6898 -0.2787 33 1 0.4785 -10.6821 -1.7464 34 1 2.9866 -11.1794 -0.0644 35 1 2.6455 -11.8829 -1.6684 36 1 3.6395 -9.8570 -2.3949 37 1 2.6821 -3.6878 -0.7544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241449856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:07 Heat of formation + Delta-G solvation = 9.881020 kcal Electronic energy + Delta-G solvation = -20496.719737 eV Core-core repulsion = 17396.382737 eV Total energy + Delta-G solvation = -3100.337000 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.43111 -38.07189 -36.63519 -35.24257 -33.62840 -31.36393 -30.43694 -29.61382 -28.71849 -26.31569 -25.31730 -23.98958 -22.65449 -21.24758 -20.24644 -19.62701 -17.86599 -17.36022 -16.67710 -16.31628 -15.44820 -15.20846 -14.89409 -14.37781 -14.10984 -13.82774 -13.63613 -13.26312 -13.18303 -12.81271 -12.67501 -12.30535 -11.73980 -11.65602 -11.37012 -11.18522 -11.00861 -10.96904 -10.59974 -10.51687 -10.29097 -9.84496 -9.65289 -9.31612 -9.11821 -8.17349 -7.74155 -7.43823 -6.73753 -6.57314 -4.33121 1.59829 1.78585 2.81935 3.08695 3.10559 3.15339 3.21890 3.29452 3.52671 3.96362 4.29576 4.53582 4.74714 4.82544 4.91298 5.03799 5.24450 5.48695 5.55955 5.63934 5.74783 5.80611 5.83924 6.16543 6.35731 6.43339 6.53537 6.59290 6.89847 6.96385 7.02542 7.09167 7.13769 7.29974 7.43119 7.61690 7.65073 7.77899 7.91125 8.05412 8.11231 8.30727 8.65334 8.92240 8.98439 10.23212 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036897 B = 0.003547 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.690962 B = 7891.610759 C = 8543.192970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.465 4.465 8 H 0.078 0.922 9 C 0.107 3.893 10 C -0.156 4.156 11 C -0.108 4.108 12 C -0.221 4.221 13 C -0.034 4.034 14 C -0.025 4.025 15 C -0.104 4.104 16 C -0.153 4.153 17 C 0.118 3.882 18 C 0.055 3.945 19 C -0.107 4.107 20 O -0.316 6.316 21 C 0.045 3.955 22 C 0.090 3.910 23 N -0.761 5.761 24 C -0.204 4.204 25 H 0.279 0.721 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.402 0.598 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 -15.929 -2.768 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.198 1.198 7 C -0.495 4.495 8 H 0.096 0.904 9 C 0.105 3.895 10 C -0.175 4.175 11 C -0.127 4.127 12 C -0.240 4.240 13 C -0.034 4.034 14 C -0.026 4.026 15 C -0.122 4.122 16 C -0.175 4.175 17 C 0.019 3.981 18 C 0.008 3.992 19 C -0.126 4.126 20 O -0.230 6.230 21 C -0.032 4.032 22 C -0.036 4.036 23 N -0.398 5.398 24 C -0.223 4.223 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.108 0.892 28 H 0.110 0.890 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.150 0.850 32 H 0.127 0.873 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.238 0.762 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.176 -15.920 -2.526 16.429 hybrid contribution 0.654 0.591 -0.581 1.056 sum 3.830 -15.329 -3.107 16.103 Atomic orbital electron populations 1.69837 1.07536 1.28993 1.35896 1.25879 0.94704 1.01224 0.92305 0.86294 0.81010 0.81115 0.78481 1.18433 1.20081 1.19779 1.19572 0.97910 0.91128 1.40927 0.90431 1.17539 0.91299 0.91877 0.88797 1.21412 0.98999 0.96831 1.00265 1.20630 0.98809 0.93180 1.00045 1.20459 1.00435 0.96357 1.06765 1.18241 0.96347 0.90262 0.98549 1.18730 0.94817 0.92465 0.96612 1.21078 0.96616 0.97049 0.97487 1.20361 1.01187 0.90935 1.04993 1.17786 0.94250 0.86550 0.99492 1.18304 0.92497 0.86464 1.01942 1.20510 1.01193 0.88457 1.02414 1.86039 1.68044 1.17481 1.51467 1.23180 0.96111 0.87874 0.96053 1.22124 0.94543 0.88227 0.98722 1.44441 1.52363 1.02070 1.40883 1.21081 1.03301 0.91959 1.06000 0.91012 0.86427 0.89226 0.89002 0.85247 0.86277 0.85015 0.87295 0.91933 0.91671 0.89430 0.76216 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 10.97 55.55 0.61 -20.11 16 2 C 0.08 1.91 5.14 -17.34 -0.09 1.83 16 3 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.47 -12.37 9.05 -37.74 -0.34 -12.71 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.11 2.86 5.56 -106.87 -0.59 2.27 16 10 C -0.16 -4.07 8.69 -38.82 -0.34 -4.41 16 11 C -0.11 -2.57 10.01 -39.71 -0.40 -2.97 16 12 C -0.22 -5.04 9.43 -38.96 -0.37 -5.41 16 13 C -0.03 -0.78 5.87 -104.98 -0.62 -1.39 16 14 C -0.02 -0.49 5.87 -104.90 -0.62 -1.11 16 15 C -0.10 -1.85 9.42 -39.25 -0.37 -2.22 16 16 C -0.15 -2.33 9.91 -39.49 -0.39 -2.72 16 17 C 0.12 1.79 6.51 -83.38 -0.54 1.24 16 18 C 0.06 0.93 6.51 -39.09 -0.25 0.67 16 19 C -0.11 -1.98 9.34 -39.10 -0.37 -2.34 16 20 O -0.32 -4.76 10.32 -19.66 -0.20 -4.96 16 21 C 0.04 0.45 7.18 37.43 0.27 0.72 16 22 C 0.09 0.80 7.35 -3.35 -0.02 0.78 16 23 N -0.76 -8.56 5.92 -57.58 -0.34 -8.90 16 24 C -0.20 -5.02 9.16 -38.52 -0.35 -5.37 16 25 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 26 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 27 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.09 1.87 6.17 -52.49 -0.32 1.55 16 29 H 0.13 2.24 6.18 -52.48 -0.32 1.91 16 30 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.13 2.38 6.17 -52.48 -0.32 2.06 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.40 3.59 8.90 -40.82 -0.36 3.22 16 37 H 0.10 2.22 6.18 -52.49 -0.32 1.90 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -29.62 307.80 -9.79 -39.41 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -4.07 Total: 9.35 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -5.39 Total: -33.13 kcal Atomic # 7 Polarization: -29.28 SS G_CDS: 0.27 Total: -29.01 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.96 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.62 -9.79 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241449856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.291 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds