Wall clock time and date at job start Fri Apr 10 2020 14:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86792 * 120.00213 * 2 1 4 4 H 1.48498 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47194 * 299.99834 * 3 2 1 6 6 H 1.48501 * 109.47506 * 59.99857 * 3 2 1 7 7 C 1.39929 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99723 * 162.72591 * 7 2 1 9 9 C 1.41423 * 119.99837 * 342.72900 * 7 2 1 10 10 C 1.40793 * 120.19025 * 334.80465 * 9 7 2 11 11 C 1.37679 * 119.99903 * 180.02562 * 10 9 7 12 12 C 1.38434 * 120.38017 * 0.02562 * 11 10 9 13 13 C 1.39717 * 120.37513 * 359.97438 * 12 11 10 14 14 C 1.48357 * 120.00145 * 180.28013 * 13 12 11 15 15 C 1.39360 * 119.98537 * 179.45029 * 14 13 12 16 16 C 1.38005 * 119.93965 * 179.82101 * 15 14 13 17 17 C 1.38727 * 120.04275 * 0.53675 * 16 15 14 18 18 C 1.39365 * 120.35175 * 359.62070 * 17 16 15 19 19 C 1.38428 * 119.66398 * 0.13356 * 18 17 16 20 20 O 1.35973 * 120.78830 * 180.29011 * 18 17 16 21 21 C 1.42949 * 117.75220 * 339.76678 * 20 18 17 22 22 C 1.53531 * 108.78263 * 49.40440 * 21 20 18 23 23 N 1.40301 * 119.94326 * 179.49864 * 17 16 15 24 24 C 1.38790 * 119.99430 * 0.02562 * 13 12 11 25 25 H 0.97004 * 119.99965 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99760 * 0.04537 * 10 9 7 27 27 H 1.08001 * 119.81319 * 179.97438 * 11 10 9 28 28 H 1.07997 * 119.81015 * 180.02562 * 12 11 10 29 29 H 1.08009 * 120.03102 * 0.06045 * 15 14 13 30 30 H 1.08009 * 119.97857 * 180.27488 * 16 15 14 31 31 H 1.08008 * 120.01351 * 179.97438 * 19 18 17 32 32 H 1.08999 * 109.58778 * 169.19959 * 21 20 18 33 33 H 1.09007 * 109.58419 * 289.61924 * 21 20 18 34 34 H 1.09004 * 109.83140 * 61.31664 * 22 21 20 35 35 H 1.09004 * 109.83500 * 182.26220 * 22 21 20 36 36 H 0.97004 * 121.12978 * 346.25989 * 23 17 16 37 37 H 1.08000 * 120.18681 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7023 1.3462 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0514 -1.2331 -0.2772 9 6 1.3485 -2.4088 0.3647 10 6 0.2195 -2.3677 1.2049 11 6 -0.4191 -3.5354 1.5574 12 6 0.0425 -4.7542 1.0906 13 6 1.1615 -4.8133 0.2560 14 6 1.6453 -6.1234 -0.2444 15 6 2.7545 -6.1809 -1.0861 16 6 3.2061 -7.4005 -1.5481 17 6 2.5498 -8.5673 -1.1842 18 6 1.4379 -8.5176 -0.3455 19 6 0.9870 -7.2954 0.1228 20 8 0.7915 -9.6562 0.0216 21 6 0.9798 -10.8190 -0.7882 22 6 2.4840 -11.0226 -1.0188 23 7 3.0043 -9.8050 -1.6635 24 6 1.8171 -3.6458 -0.1091 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1457 -1.4202 1.5726 27 1 -1.2846 -3.5005 2.2024 28 1 -0.4657 -5.6645 1.3725 29 1 3.2627 -5.2722 -1.3735 30 1 4.0684 -7.4462 -2.1969 31 1 0.1255 -7.2503 0.7727 32 1 0.5671 -11.6898 -0.2787 33 1 0.4785 -10.6821 -1.7464 34 1 2.9866 -11.1794 -0.0644 35 1 2.6455 -11.8829 -1.6684 36 1 3.6395 -9.8570 -2.3949 37 1 2.6821 -3.6878 -0.7544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241449856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:06 Heat of formation + Delta-G solvation = -6.859371 kcal Electronic energy + Delta-G solvation = -20497.445655 eV Core-core repulsion = 17396.382737 eV Total energy + Delta-G solvation = -3101.062918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.57229 -39.67606 -38.08606 -36.34958 -35.42446 -32.75813 -32.03068 -31.18486 -30.08076 -27.56612 -27.19163 -25.13076 -24.05967 -22.76363 -21.99503 -20.93673 -19.38627 -18.52799 -18.11065 -17.47534 -17.21203 -16.53723 -16.28283 -15.63092 -15.47095 -15.26929 -14.73814 -14.69668 -14.56366 -14.35107 -14.14304 -13.81061 -13.39658 -13.14242 -12.88962 -12.76009 -12.54550 -12.41337 -12.09499 -11.84115 -11.72647 -11.46205 -11.19507 -11.08576 -10.91826 -9.47652 -9.38368 -9.24519 -8.61323 -7.98312 -6.32809 0.13221 0.48711 1.01103 1.37098 1.40452 1.54793 1.58022 2.23172 2.27133 2.55290 2.70216 3.04428 3.70338 3.82075 3.85837 4.04630 4.16414 4.28250 4.34703 4.37268 4.48132 4.56041 4.65749 4.74671 4.84912 5.00331 5.03515 5.12152 5.20589 5.25124 5.32793 5.43524 5.66262 5.73261 5.81094 6.02635 6.06477 6.10871 6.24992 6.41535 6.58862 6.70995 6.84462 6.96668 7.04784 8.37244 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036897 B = 0.003547 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.690962 B = 7891.610759 C = 8543.192970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.034 3.966 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.080 3.920 10 C -0.187 4.187 11 C -0.109 4.109 12 C -0.229 4.229 13 C -0.028 4.028 14 C -0.062 4.062 15 C -0.109 4.109 16 C -0.151 4.151 17 C 0.132 3.868 18 C 0.046 3.954 19 C -0.114 4.114 20 O -0.334 6.334 21 C 0.033 3.967 22 C 0.087 3.913 23 N -0.750 5.750 24 C -0.224 4.224 25 H 0.287 0.713 26 H 0.102 0.898 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.152 0.848 31 H 0.127 0.873 32 H 0.143 0.857 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.417 0.583 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 -18.505 -3.734 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.190 1.190 7 C -0.531 4.531 8 H 0.094 0.906 9 C 0.078 3.922 10 C -0.207 4.207 11 C -0.127 4.127 12 C -0.248 4.248 13 C -0.028 4.028 14 C -0.064 4.064 15 C -0.128 4.128 16 C -0.173 4.173 17 C 0.030 3.970 18 C -0.002 4.002 19 C -0.133 4.133 20 O -0.249 6.249 21 C -0.043 4.043 22 C -0.038 4.038 23 N -0.387 5.387 24 C -0.244 4.244 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.144 0.856 30 H 0.169 0.831 31 H 0.145 0.855 32 H 0.160 0.840 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.149 0.851 36 H 0.255 0.745 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.317 -18.558 -3.509 19.374 hybrid contribution 0.294 1.026 -0.339 1.120 sum 4.611 -17.533 -3.848 18.533 Atomic orbital electron populations 1.69897 1.09029 1.30383 1.36223 1.26758 0.95489 1.04508 0.91221 0.85150 0.79426 0.76173 0.78877 1.18125 1.19065 1.18958 1.19829 0.98136 0.92356 1.42819 0.90591 1.17904 0.91978 0.92968 0.89379 1.21359 1.00231 0.97052 1.02058 1.20907 0.99126 0.92847 0.99851 1.20788 1.00607 0.96886 1.06525 1.18591 0.95559 0.91458 0.97204 1.18598 0.96988 0.91426 0.99352 1.21147 0.96095 0.98246 0.97286 1.20615 1.01867 0.89917 1.04895 1.17919 0.93085 0.88134 0.97822 1.18311 0.93140 0.86665 1.02133 1.20479 1.01124 0.89073 1.02664 1.86015 1.68085 1.18075 1.52687 1.23619 0.97429 0.87018 0.96221 1.22378 0.93298 0.88377 0.99700 1.44604 1.51900 1.01419 1.40780 1.21247 1.04145 0.92112 1.06883 0.90232 0.88025 0.86932 0.86648 0.85608 0.83063 0.85484 0.83977 0.91732 0.91627 0.85101 0.74541 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.68 10.97 21.82 0.24 -44.44 16 2 C 0.03 1.79 5.14 85.25 0.44 2.22 16 3 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.50 -27.93 9.05 23.46 0.21 -27.72 16 8 H 0.08 4.07 7.90 -2.91 -0.02 4.05 16 9 C 0.08 4.50 5.56 -21.32 -0.12 4.38 16 10 C -0.19 -10.33 8.69 22.76 0.20 -10.14 16 11 C -0.11 -5.35 10.01 22.18 0.22 -5.13 16 12 C -0.23 -10.69 9.43 22.67 0.21 -10.48 16 13 C -0.03 -1.33 5.87 -20.09 -0.12 -1.45 16 14 C -0.06 -2.50 5.87 -20.05 -0.12 -2.61 16 15 C -0.11 -3.86 9.42 22.48 0.21 -3.65 16 16 C -0.15 -4.27 9.91 22.33 0.22 -4.04 16 17 C 0.13 3.63 6.51 38.17 0.25 3.88 16 18 C 0.05 1.46 6.51 22.59 0.15 1.61 16 19 C -0.11 -4.22 9.34 22.58 0.21 -4.01 16 20 O -0.33 -9.33 10.32 -93.25 -0.96 -10.29 16 21 C 0.03 0.54 7.18 72.16 0.52 1.06 16 22 C 0.09 1.15 7.35 86.41 0.64 1.78 16 23 N -0.75 -13.75 5.92 -336.07 -1.99 -15.74 16 24 C -0.22 -11.58 9.16 22.95 0.21 -11.37 16 25 H 0.29 13.92 8.30 -92.70 -0.77 13.15 16 26 H 0.10 5.81 6.18 -2.91 -0.02 5.79 16 27 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 28 H 0.12 4.74 6.17 -2.91 -0.02 4.72 16 29 H 0.13 4.43 6.18 -2.91 -0.02 4.41 16 30 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.13 4.63 6.17 -2.91 -0.02 4.61 16 32 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.42 5.45 8.90 -92.70 -0.83 4.63 16 37 H 0.10 5.03 6.18 -2.91 -0.02 5.01 16 Total: -1.00 -67.65 307.80 2.94 -64.71 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.29 Total: 30.23 kcal Atomic # 6 Polarization: -68.99 SS G_CDS: 3.33 Total: -65.66 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -1.75 Total: -60.18 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.96 Total: -10.29 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -67.65 2.94 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241449856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.854 kcal (2) G-P(sol) polarization free energy of solvation -67.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds