Wall clock time and date at job start Fri Apr 10 2020 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86797 * 120.00206 * 2 1 4 4 H 1.48503 * 109.47590 * 275.41694 * 3 2 1 5 5 H 1.48498 * 109.47125 * 35.41455 * 3 2 1 6 6 H 1.48504 * 109.47585 * 155.41232 * 3 2 1 7 7 C 1.39935 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99966 * 341.72726 * 7 2 1 9 9 C 1.41420 * 120.00092 * 161.73403 * 7 2 1 10 10 C 1.40782 * 120.18771 * 330.17578 * 9 7 2 11 11 C 1.37683 * 119.99116 * 180.02562 * 10 9 7 12 12 C 1.38434 * 120.38339 * 359.74805 * 11 10 9 13 13 C 1.39693 * 120.37440 * 0.50914 * 12 11 10 14 14 C 1.48396 * 119.99758 * 179.76552 * 13 12 11 15 15 C 1.39922 * 120.87438 * 179.97438 * 14 13 12 16 16 C 1.37816 * 119.15014 * 180.29730 * 15 14 13 17 17 N 1.32012 * 120.96033 * 359.69974 * 16 15 14 18 18 C 1.32286 * 121.92342 * 359.97438 * 17 16 15 19 19 O 1.35686 * 119.62878 * 179.97438 * 18 17 16 20 20 C 1.42899 * 117.00355 * 0.02563 * 19 18 17 21 21 C 1.52991 * 117.50078 * 218.74404 * 20 19 18 22 22 C 1.52994 * 117.49926 * 150.08232 * 20 19 18 23 23 C 1.38711 * 120.74244 * 0.02562 * 18 17 16 24 24 C 1.38780 * 119.99971 * 359.48973 * 13 12 11 25 25 H 0.97001 * 120.00037 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00565 * 0.04605 * 10 9 7 27 27 H 1.07999 * 119.80983 * 180.02562 * 11 10 9 28 28 H 1.07992 * 119.81448 * 180.25292 * 12 11 10 29 29 H 1.08001 * 120.41891 * 359.97109 * 15 14 13 30 30 H 1.08007 * 119.52155 * 179.72466 * 16 15 14 31 31 H 1.09006 * 115.54322 * 4.41496 * 20 19 18 32 32 H 1.09000 * 117.50063 * 0.02562 * 21 20 19 33 33 H 1.09007 * 117.49697 * 145.01761 * 21 20 19 34 34 H 1.09008 * 117.49730 * 214.98119 * 22 20 19 35 35 H 1.08996 * 117.50063 * 0.02562 * 22 20 19 36 36 H 1.08006 * 120.51760 * 179.97438 * 23 18 17 37 37 H 1.07993 * 120.19019 * 180.27406 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1125 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4099 0.5825 7 6 2.0080 -1.2119 -0.0005 8 1 1.5088 -2.1237 0.2923 9 6 3.3687 -1.2425 -0.3844 10 6 3.8626 -0.3100 -1.3163 11 6 5.1880 -0.3439 -1.6876 12 6 6.0430 -1.2881 -1.1456 13 6 5.5684 -2.2243 -0.2237 14 6 6.4912 -3.2360 0.3481 15 6 6.0356 -4.1818 1.2732 16 6 6.9247 -5.1014 1.7863 17 7 8.1909 -5.1034 1.4128 18 6 8.6631 -4.2321 0.5364 19 8 9.9732 -4.2761 0.1861 20 6 10.7759 -5.2856 0.8014 21 6 12.2039 -4.9075 1.1994 22 6 11.9615 -5.8299 0.0022 23 6 7.8342 -3.2735 -0.0275 24 6 4.2354 -2.2044 0.1617 25 1 -0.4850 0.8400 0.0004 26 1 3.2020 0.4321 -1.7397 27 1 5.5638 0.3732 -2.4024 28 1 7.0818 -1.3038 -1.4403 29 1 5.0017 -4.1877 1.5851 30 1 6.5805 -5.8313 2.5041 31 1 10.2413 -5.9826 1.4468 32 1 12.5311 -3.8885 0.9923 33 1 12.6090 -5.3561 2.1065 34 1 12.2073 -6.8852 0.1222 35 1 12.1295 -5.4178 -0.9927 36 1 8.2236 -2.5637 -0.7423 37 1 3.8663 -2.9238 0.8776 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242722866.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:50 Heat of formation + Delta-G solvation = 29.939037 kcal Electronic energy + Delta-G solvation = -20178.927386 eV Core-core repulsion = 17079.460166 eV Total energy + Delta-G solvation = -3099.467219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.66430 -39.95199 -39.04147 -36.32520 -35.72749 -34.26915 -32.33923 -31.33895 -30.49975 -27.16963 -25.49679 -24.47544 -23.36601 -23.34243 -22.19309 -21.76044 -19.85853 -18.65217 -18.05790 -17.65824 -16.96422 -16.44634 -16.35860 -15.94860 -15.78295 -15.44579 -15.02456 -15.01252 -14.56043 -14.19718 -13.98281 -13.76660 -13.50032 -13.36229 -13.01699 -12.71924 -12.56085 -12.46102 -12.26507 -11.68526 -11.49839 -11.43226 -11.25846 -11.04253 -10.92938 -10.64464 -9.58610 -9.44593 -9.13336 -8.90837 -6.52584 -0.28539 0.20085 0.76485 1.12453 1.26963 1.40254 1.49113 1.85839 2.11091 2.51990 2.77590 2.96009 3.25571 3.50833 3.62487 3.80929 3.98622 4.00179 4.07127 4.12970 4.28268 4.38655 4.42110 4.57190 4.70320 4.72205 4.79569 4.88420 4.91504 4.94751 5.00536 5.17288 5.19176 5.33147 5.48078 5.56224 5.74479 5.86316 5.93508 6.18437 6.25707 6.35261 6.68322 6.80104 6.82817 8.17505 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036451 B = 0.003459 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.977310 B = 8092.393527 C = 8572.990342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.049 3.951 3 Si 0.962 3.038 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.484 4.484 8 H 0.060 0.940 9 C 0.070 3.930 10 C -0.240 4.240 11 C -0.084 4.084 12 C -0.207 4.207 13 C -0.039 4.039 14 C 0.040 3.960 15 C -0.211 4.211 16 C 0.145 3.855 17 N -0.554 5.554 18 C 0.315 3.685 19 O -0.290 6.290 20 C -0.017 4.017 21 C -0.173 4.173 22 C -0.166 4.166 23 C -0.196 4.196 24 C -0.189 4.189 25 H 0.294 0.706 26 H 0.100 0.900 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.196 0.804 31 H 0.135 0.865 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.100 0.900 36 H 0.148 0.852 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.733 -7.158 2.006 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.166 4.166 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.513 4.513 8 H 0.078 0.922 9 C 0.067 3.933 10 C -0.260 4.260 11 C -0.102 4.102 12 C -0.226 4.226 13 C -0.039 4.039 14 C 0.032 3.968 15 C -0.231 4.231 16 C -0.009 4.009 17 N -0.278 5.278 18 C 0.137 3.863 19 O -0.197 6.197 20 C -0.073 4.073 21 C -0.210 4.210 22 C -0.203 4.203 23 C -0.216 4.216 24 C -0.208 4.208 25 H 0.104 0.896 26 H 0.118 0.882 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.165 0.835 30 H 0.213 0.787 31 H 0.152 0.848 32 H 0.117 0.883 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.166 0.834 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 19.187 -7.533 2.189 20.728 hybrid contribution -1.114 1.193 -0.303 1.660 sum 18.073 -6.340 1.886 19.245 Atomic orbital electron populations 1.69720 1.09122 1.31451 1.37174 1.26774 0.95289 1.04086 0.90405 0.85542 0.79639 0.76773 0.79538 1.18182 1.20484 1.17754 1.19448 0.94345 0.95724 1.41810 0.92183 1.17806 0.92706 0.92216 0.90550 1.21312 0.96979 1.04301 1.03362 1.20948 0.92717 0.97935 0.98580 1.20950 0.99859 0.98977 1.02787 1.18546 0.92442 0.95281 0.97639 1.19180 0.91867 0.92888 0.92824 1.22338 1.02762 0.97649 1.00326 1.22794 0.86057 0.96096 0.95978 1.67178 1.18243 1.26010 1.16385 1.19626 0.84731 0.91018 0.90934 1.86129 1.16356 1.53404 1.63848 1.23208 0.87063 0.94256 1.02766 1.23533 0.95703 1.01429 1.00331 1.23513 0.98447 1.01121 0.97204 1.21117 0.92521 1.02105 1.05898 1.21314 0.92379 1.03349 1.03776 0.89585 0.88226 0.84908 0.85161 0.83527 0.78745 0.84759 0.88296 0.85794 0.85586 0.88148 0.83442 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.00 13.93 21.82 0.30 -45.70 16 2 C 0.05 2.60 5.40 85.25 0.46 3.06 16 3 Si 0.96 42.11 24.51 68.60 1.68 43.80 16 4 H -0.26 -10.57 6.71 99.48 0.67 -9.90 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 6 H -0.25 -11.38 6.86 99.48 0.68 -10.69 16 7 C -0.48 -26.60 9.57 23.47 0.22 -26.37 16 8 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 9 C 0.07 3.47 5.10 -21.32 -0.11 3.36 16 10 C -0.24 -11.07 7.17 22.76 0.16 -10.91 16 11 C -0.08 -3.31 10.01 22.19 0.22 -3.08 16 12 C -0.21 -7.79 9.46 22.67 0.21 -7.58 16 13 C -0.04 -1.55 5.87 -20.09 -0.12 -1.67 16 14 C 0.04 1.37 5.91 -19.86 -0.12 1.25 16 15 C -0.21 -6.31 9.49 22.58 0.21 -6.10 16 16 C 0.15 3.71 11.16 84.57 0.94 4.65 16 17 N -0.55 -15.72 8.57 -309.20 -2.65 -18.37 16 18 C 0.31 9.57 7.48 84.74 0.63 10.20 16 19 O -0.29 -8.18 10.37 -90.04 -0.93 -9.11 16 20 C -0.02 -0.36 6.36 30.59 0.19 -0.17 16 21 C -0.17 -2.75 10.48 30.61 0.32 -2.42 16 22 C -0.17 -2.58 10.48 30.62 0.32 -2.26 16 23 C -0.20 -6.21 9.43 22.69 0.21 -6.00 16 24 C -0.19 -8.45 9.19 22.96 0.21 -8.24 16 25 H 0.29 14.30 8.30 -92.71 -0.77 13.53 16 26 H 0.10 4.58 4.72 -2.91 -0.01 4.56 16 27 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 28 H 0.13 4.11 6.27 -2.91 -0.02 4.09 16 29 H 0.15 4.19 6.33 -2.91 -0.02 4.17 16 30 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.13 2.97 6.86 -2.38 -0.02 2.95 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.58 16 36 H 0.15 4.32 6.32 -2.91 -0.02 4.30 16 37 H 0.11 4.79 6.28 -2.91 -0.02 4.77 16 Total: -1.00 -61.01 312.42 3.43 -57.57 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.04 Total: 24.08 kcal Atomic # 6 Polarization: -56.27 SS G_CDS: 3.99 Total: -52.27 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: -2.35 Total: -64.07 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.93 Total: -9.11 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.68 Total: 43.80 kcal Total: -61.01 3.43 -57.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242722866.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.513 kcal (2) G-P(sol) polarization free energy of solvation -61.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds