Wall clock time and date at job start Fri Apr 10 2020 14:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86796 * 119.99849 * 2 1 4 4 H 1.48493 * 109.47250 * 239.99997 * 3 2 1 5 5 H 1.48501 * 109.47551 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46985 * 120.00063 * 3 2 1 7 7 C 1.40034 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00385 * 196.87548 * 7 2 1 9 9 C 1.41535 * 120.00546 * 16.87720 * 7 2 1 10 10 C 1.41150 * 120.98758 * 203.98232 * 9 7 2 11 11 C 1.37723 * 119.08670 * 179.97438 * 10 9 7 12 12 N 1.31943 * 121.15734 * 359.97438 * 11 10 9 13 13 C 1.32817 * 122.19987 * 0.02562 * 12 11 10 14 14 C 1.48260 * 119.61318 * 179.97438 * 13 12 11 15 15 C 1.39356 * 120.15356 * 180.25108 * 14 13 12 16 16 C 1.37969 * 119.92837 * 180.29944 * 15 14 13 17 17 C 1.38409 * 120.25270 * 359.72344 * 16 15 14 18 18 C 1.38163 * 120.30868 * 0.02562 * 17 16 15 19 19 C 1.38609 * 120.06630 * 0.02562 * 18 17 16 20 20 O 1.35809 * 120.12474 * 180.02562 * 19 18 17 21 21 C 1.42903 * 116.99793 * 6.08026 * 20 19 18 22 22 C 1.53005 * 117.49408 * 225.49095 * 21 20 19 23 23 C 1.52998 * 60.00059 * 252.51167 * 22 21 20 24 24 C 1.38959 * 120.76316 * 0.27140 * 13 12 11 25 25 H 0.97004 * 120.00175 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.46002 * 359.94961 * 10 9 7 27 27 H 1.07997 * 119.41858 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.03385 * 0.02562 * 15 14 13 29 29 H 1.08006 * 119.87616 * 179.75137 * 16 15 14 30 30 H 1.07998 * 119.84978 * 180.02562 * 17 16 15 31 31 H 1.08001 * 119.96608 * 180.02562 * 18 17 16 32 32 H 1.08996 * 115.55346 * 11.19621 * 21 20 19 33 33 H 1.08996 * 117.49928 * 0.02562 * 22 21 20 34 34 H 1.09004 * 117.49569 * 145.01757 * 22 21 20 35 35 H 1.08998 * 117.49978 * 252.51749 * 23 22 21 36 36 H 1.09001 * 117.49887 * 107.49217 * 23 22 21 37 37 H 1.08007 * 120.61896 * 179.71867 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.0950 1.6964 -1.2124 5 1 1.2764 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0527 -1.2331 0.2710 9 6 1.3457 -2.4120 -0.3569 10 6 1.8191 -3.6640 0.0910 11 6 1.1444 -4.8062 -0.2790 12 7 0.0686 -4.7472 -1.0407 13 6 -0.4187 -3.5960 -1.4891 14 6 -1.6313 -3.5964 -2.3422 15 6 -2.1492 -2.3954 -2.8232 16 6 -3.2814 -2.4008 -3.6117 17 6 -3.9025 -3.5955 -3.9320 18 6 -3.3946 -4.7925 -3.4649 19 6 -2.2585 -4.8022 -2.6710 20 8 -1.7580 -5.9782 -2.2116 21 6 -2.3711 -7.1761 -2.6924 22 6 -2.6971 -8.2636 -1.6667 23 6 -1.5412 -8.4608 -2.6494 24 6 0.1982 -2.3917 -1.1730 25 1 -0.4850 0.8401 0.0004 26 1 2.6985 -3.7255 0.7149 27 1 1.5017 -5.7670 0.0610 28 1 -1.6674 -1.4612 -2.5754 29 1 -3.6845 -1.4691 -3.9807 30 1 -4.7882 -3.5921 -4.5500 31 1 -3.8834 -5.7215 -3.7187 32 1 -3.0594 -7.0493 -3.5280 33 1 -2.4443 -8.0650 -0.6252 34 1 -3.6003 -8.8523 -1.8273 35 1 -1.6838 -9.1792 -3.4566 36 1 -0.5275 -8.3922 -2.2545 37 1 -0.1975 -1.4572 -1.5427 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242791920.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:31 Heat of formation + Delta-G solvation = 51.498869 kcal Electronic energy + Delta-G solvation = -21015.818249 eV Core-core repulsion = 17917.285934 eV Total energy + Delta-G solvation = -3098.532315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.82033 -38.21636 -37.27003 -34.88252 -34.09315 -31.87126 -30.55677 -29.42567 -27.98218 -25.94047 -23.68240 -22.64657 -22.32770 -21.62773 -20.54704 -20.06291 -18.20948 -17.25010 -15.76499 -15.60959 -15.11502 -15.00252 -14.48833 -14.28200 -14.17680 -13.90470 -13.47689 -13.24519 -12.62485 -12.58696 -12.42159 -11.87804 -11.66877 -11.45717 -11.38319 -11.25744 -11.19789 -10.86160 -10.56838 -10.28851 -10.24089 -9.83938 -9.75150 -9.42240 -8.85560 -7.99701 -7.88102 -7.83227 -6.98804 -6.80327 -4.57664 1.51855 1.88544 2.81346 2.94254 3.01925 3.04545 3.29283 3.48804 3.85754 3.89122 4.28141 4.73961 4.76514 5.02127 5.12491 5.17946 5.27022 5.37206 5.47298 5.66161 5.73453 5.75832 5.80581 6.01310 6.11477 6.22045 6.22595 6.37023 6.62631 6.68468 6.78665 6.88497 6.95460 7.09691 7.14502 7.29923 7.36085 7.49244 7.86757 8.01038 8.12838 8.45674 8.73987 8.75980 9.66694 10.08083 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.005207 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.387650 B = 5375.665404 C = 6593.035738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.125 3.875 10 C -0.273 4.273 11 C 0.100 3.900 12 N -0.537 5.537 13 C 0.140 3.860 14 C -0.046 4.046 15 C -0.068 4.068 16 C -0.164 4.164 17 C -0.091 4.091 18 C -0.224 4.224 19 C 0.151 3.849 20 O -0.227 6.227 21 C -0.004 4.004 22 C -0.187 4.187 23 C -0.171 4.171 24 C -0.191 4.191 25 H 0.284 0.716 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.417 -6.614 -6.167 11.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.296 4.296 11 C -0.057 4.057 12 N -0.250 5.250 13 C 0.009 3.991 14 C -0.048 4.048 15 C -0.087 4.087 16 C -0.183 4.183 17 C -0.110 4.110 18 C -0.243 4.243 19 C 0.104 3.896 20 O -0.138 6.138 21 C -0.061 4.061 22 C -0.224 4.224 23 C -0.208 4.208 24 C -0.214 4.214 25 H 0.095 0.905 26 H 0.118 0.882 27 H 0.137 0.863 28 H 0.155 0.845 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.142 0.858 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.887 -7.290 -6.237 11.811 hybrid contribution 0.628 1.518 0.287 1.668 sum -6.259 -5.772 -5.951 10.388 Atomic orbital electron populations 1.69763 1.07656 1.29634 1.34371 1.25945 0.94762 1.01441 0.91910 0.86322 0.80162 0.79927 0.80105 1.18693 1.20181 1.18901 1.19547 0.97879 0.90800 1.40718 0.90118 1.17738 0.90602 0.92323 0.87658 1.21933 1.04870 0.94029 1.08732 1.21844 0.92087 0.96569 0.95156 1.67452 1.14223 1.27720 1.15655 1.19140 0.93415 0.90003 0.96498 1.18270 0.96012 0.90209 1.00290 1.21231 0.95038 0.97382 0.95056 1.20884 0.97549 0.97764 1.02074 1.20814 0.99078 0.92032 0.99039 1.21078 0.98977 0.99036 1.05210 1.19080 0.91626 0.85998 0.92892 1.86553 1.54151 1.10038 1.63028 1.23017 1.00967 0.82419 0.99728 1.23385 0.99569 1.01678 0.97756 1.23259 0.97940 0.97567 1.01998 1.22229 0.99880 0.97049 1.02203 0.90539 0.88240 0.86317 0.84546 0.86280 0.86553 0.85845 0.86668 0.87866 0.88487 0.88286 0.87641 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.76 10.95 55.55 0.61 -19.16 16 2 C 0.08 1.92 5.19 -17.34 -0.09 1.83 16 3 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.97 9.12 -37.65 -0.34 -12.31 16 8 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 9 C 0.12 3.34 5.60 -106.56 -0.60 2.74 16 10 C -0.27 -6.78 9.90 -38.67 -0.38 -7.16 16 11 C 0.10 2.37 11.15 -17.69 -0.20 2.18 16 12 N -0.54 -13.40 8.11 -9.95 -0.08 -13.48 16 13 C 0.14 3.53 6.73 -83.05 -0.56 2.97 16 14 C -0.05 -1.02 5.89 -104.76 -0.62 -1.63 16 15 C -0.07 -1.32 9.41 -39.26 -0.37 -1.69 16 16 C -0.16 -2.62 10.03 -39.62 -0.40 -3.02 16 17 C -0.09 -1.35 10.03 -39.55 -0.40 -1.74 16 18 C -0.22 -3.59 9.10 -39.47 -0.36 -3.95 16 19 C 0.15 2.98 6.68 -38.85 -0.26 2.72 16 20 O -0.23 -4.48 8.21 -19.14 -0.16 -4.63 16 21 C 0.00 -0.06 6.10 -26.73 -0.16 -0.22 16 22 C -0.19 -2.32 10.48 -26.73 -0.28 -2.60 16 23 C -0.17 -2.13 10.48 -26.73 -0.28 -2.41 16 24 C -0.19 -5.01 8.14 -38.34 -0.31 -5.32 16 25 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 26 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 27 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 28 H 0.14 2.69 6.18 -52.49 -0.32 2.36 16 29 H 0.12 1.57 8.06 -52.48 -0.42 1.14 16 30 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.12 1.61 5.68 -52.49 -0.30 1.32 16 32 H 0.12 1.42 5.55 -51.93 -0.29 1.13 16 33 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.13 3.36 4.36 -52.48 -0.23 3.13 16 LS Contribution 314.96 15.07 4.75 4.75 Total: -1.00 -29.35 314.96 -9.59 -38.94 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -4.07 Total: 10.10 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -5.60 Total: -29.62 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.53 Total: -32.64 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.16 Total: -4.63 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.35 -9.59 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242791920.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.440 kcal (2) G-P(sol) polarization free energy of solvation -29.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds