Wall clock time and date at job start Fri Apr 10 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86798 * 120.00161 * 2 1 4 4 H 1.48502 * 109.46897 * 274.99635 * 3 2 1 5 5 H 1.48496 * 109.47408 * 34.99734 * 3 2 1 6 6 H 1.48499 * 109.47041 * 155.00367 * 3 2 1 7 7 C 1.40081 * 119.99382 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99729 * 174.80208 * 7 2 1 9 9 C 1.40931 * 120.00282 * 354.80022 * 7 2 1 10 10 C 1.40916 * 119.67329 * 185.22471 * 9 7 2 11 11 C 1.36633 * 119.25926 * 179.72138 * 10 9 7 12 12 C 1.40335 * 118.60204 * 0.51953 * 11 10 9 13 13 C 1.47832 * 120.34907 * 179.73017 * 12 11 10 14 14 C 1.39637 * 120.18230 * 309.74757 * 13 12 11 15 15 C 1.37851 * 119.90489 * 179.97438 * 14 13 12 16 16 C 1.38518 * 120.28341 * 0.02562 * 15 14 13 17 17 C 1.38191 * 120.37356 * 359.97438 * 16 15 14 18 18 C 1.38566 * 120.08419 * 359.97438 * 17 16 15 19 19 O 1.35768 * 120.14365 * 180.02562 * 18 17 16 20 20 C 1.42909 * 116.99578 * 354.41060 * 19 18 17 21 21 C 1.52998 * 117.49613 * 224.88316 * 20 19 18 22 22 C 1.53002 * 117.49724 * 156.25948 * 20 19 18 23 23 C 1.40162 * 119.29893 * 359.45890 * 12 11 10 24 24 N 1.31176 * 120.67943 * 0.29616 * 23 12 11 25 25 H 0.96998 * 119.99858 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.36745 * 359.97438 * 10 9 7 27 27 H 1.08004 * 120.69709 * 180.25658 * 11 10 9 28 28 H 1.07998 * 120.04318 * 359.97438 * 14 13 12 29 29 H 1.07999 * 119.85821 * 180.27707 * 15 14 13 30 30 H 1.08007 * 119.81632 * 179.97438 * 16 15 14 31 31 H 1.08000 * 119.95769 * 179.97438 * 17 16 15 32 32 H 1.08999 * 115.55029 * 10.59125 * 20 19 18 33 33 H 1.08998 * 117.49779 * 359.97438 * 21 20 19 34 34 H 1.08999 * 117.50029 * 145.02207 * 21 20 19 35 35 H 1.08994 * 117.50038 * 214.98003 * 22 20 19 36 36 H 1.09005 * 117.49576 * 0.02562 * 22 20 19 37 37 H 1.08004 * 119.66285 * 180.27342 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3832 2.1073 -1.3948 5 1 1.4957 2.6199 0.8030 6 1 3.5877 1.4118 0.5916 7 6 2.0076 -1.2132 0.0005 8 1 3.0843 -1.2152 -0.0842 9 6 1.3072 -2.4311 0.1117 10 6 2.0230 -3.6398 0.2228 11 6 1.3354 -4.8151 0.3358 12 6 -0.0674 -4.7765 0.3261 13 6 -0.8499 -6.0255 0.4401 14 6 -0.5626 -7.1119 -0.3888 15 6 -1.2956 -8.2741 -0.2773 16 6 -2.3169 -8.3692 0.6535 17 6 -2.6111 -7.3012 1.4797 18 6 -1.8834 -6.1261 1.3814 19 8 -2.1711 -5.0763 2.1929 20 6 -3.3145 -5.2056 3.0403 21 6 -4.2673 -4.0117 3.1280 22 6 -3.3544 -4.3503 4.3083 23 6 -0.7187 -3.5405 0.2131 24 7 -0.0307 -2.4283 0.1111 25 1 -0.4850 0.8400 0.0004 26 1 3.1029 -3.6368 0.2226 27 1 1.8605 -5.7546 0.4265 28 1 0.2326 -7.0417 -1.1162 29 1 -1.0699 -9.1155 -0.9157 30 1 -2.8867 -9.2833 0.7341 31 1 -3.4091 -7.3826 2.2028 32 1 -3.7509 -6.2031 3.0921 33 1 -4.0218 -3.1275 2.5398 34 1 -5.3309 -4.2236 3.2375 35 1 -3.8174 -4.7849 5.1942 36 1 -2.5087 -3.6887 4.4959 37 1 -1.7981 -3.5035 0.2094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242792081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:17 Heat of formation + Delta-G solvation = 54.096703 kcal Electronic energy + Delta-G solvation = -20870.410068 eV Core-core repulsion = 17771.990404 eV Total energy + Delta-G solvation = -3098.419664 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.88054 -38.14077 -37.32792 -34.96213 -33.79933 -31.77851 -30.46499 -29.63915 -28.58623 -25.51314 -23.63118 -22.40403 -22.29816 -21.66234 -20.72997 -20.18197 -18.08567 -17.49509 -15.92159 -15.73171 -15.33211 -15.00173 -14.54496 -14.23517 -14.09764 -13.78578 -13.71730 -13.41557 -12.60360 -12.20360 -12.09612 -11.95832 -11.77463 -11.47670 -11.36244 -11.23913 -11.06959 -10.99683 -10.67077 -10.45296 -10.19559 -9.91981 -9.85671 -9.42216 -8.66228 -8.21569 -7.89628 -7.54258 -7.16580 -6.45004 -4.53103 1.64839 1.81684 2.75842 3.05738 3.08568 3.11787 3.18140 3.38290 3.84070 3.89761 4.24631 4.67332 4.73183 4.97992 5.07797 5.16451 5.24727 5.38789 5.57845 5.64880 5.73621 5.87579 5.93920 6.02163 6.10570 6.15035 6.17534 6.20675 6.47221 6.66186 6.74378 6.82613 6.87817 6.95502 7.07689 7.21704 7.41555 7.57744 7.77319 7.92711 8.02909 8.19507 8.60550 8.89839 10.10141 10.25967 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.005056 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.562992 B = 5537.117658 C = 6754.189988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.420 4.420 8 H 0.085 0.915 9 C 0.255 3.745 10 C -0.275 4.275 11 C -0.036 4.036 12 C -0.267 4.267 13 C -0.007 4.007 14 C -0.094 4.094 15 C -0.154 4.154 16 C -0.110 4.110 17 C -0.209 4.209 18 C 0.120 3.880 19 O -0.264 6.264 20 C 0.001 3.999 21 C -0.185 4.185 22 C -0.174 4.174 23 C 0.168 3.832 24 N -0.489 5.489 25 H 0.274 0.726 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.269 -9.191 3.838 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.160 4.160 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.450 4.450 8 H 0.103 0.897 9 C 0.131 3.869 10 C -0.298 4.298 11 C -0.060 4.060 12 C -0.273 4.273 13 C -0.009 4.009 14 C -0.112 4.112 15 C -0.173 4.173 16 C -0.128 4.128 17 C -0.228 4.228 18 C 0.075 3.925 19 O -0.176 6.176 20 C -0.056 4.056 21 C -0.222 4.222 22 C -0.211 4.211 23 C 0.000 4.000 24 N -0.201 5.201 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.142 0.858 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.726 -7.994 3.780 11.110 hybrid contribution 0.623 -0.350 0.208 0.744 sum -6.103 -8.344 3.988 11.081 Atomic orbital electron populations 1.70146 1.07290 1.27960 1.27210 1.26142 0.94929 1.01254 0.93672 0.86299 0.80629 0.80737 0.79147 1.19371 1.19960 1.18384 1.19667 0.94708 0.89696 1.40964 0.89694 1.18643 0.88537 0.91847 0.87855 1.21380 0.98716 0.93830 1.15837 1.20562 0.92738 0.96608 0.96078 1.18860 0.92879 0.92251 1.23273 1.18282 0.94521 0.94750 0.93297 1.21136 0.99606 0.92236 0.98264 1.20883 0.97865 0.98071 1.00459 1.20739 0.98100 0.97670 0.96316 1.21034 1.03439 0.94231 1.04059 1.19161 0.95765 0.86490 0.91099 1.86190 1.43405 1.37825 1.50208 1.22994 0.90400 0.96605 0.95629 1.23440 0.96467 1.00444 1.01834 1.23312 1.02655 1.03192 0.91925 1.22611 0.98313 0.87568 0.91509 1.68798 1.07148 1.25950 1.18176 0.91459 0.88333 0.88762 0.85841 0.86695 0.86767 0.86019 0.86243 0.87500 0.88193 0.88048 0.87725 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.80 11.46 55.55 0.64 -18.16 16 2 C 0.07 1.69 5.49 -17.33 -0.10 1.59 16 3 Si 0.91 18.40 29.56 -169.99 -5.03 13.38 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.42 -11.23 9.11 -37.87 -0.35 -11.58 16 8 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 9 C 0.25 7.05 6.54 -84.98 -0.56 6.49 16 10 C -0.28 -6.85 9.76 -39.15 -0.38 -7.23 16 11 C -0.04 -0.84 9.60 -39.37 -0.38 -1.21 16 12 C -0.27 -6.21 5.31 -104.46 -0.55 -6.76 16 13 C -0.01 -0.14 5.50 -104.73 -0.58 -0.72 16 14 C -0.09 -1.62 9.54 -39.20 -0.37 -1.99 16 15 C -0.15 -2.25 10.03 -39.62 -0.40 -2.65 16 16 C -0.11 -1.53 10.03 -39.50 -0.40 -1.93 16 17 C -0.21 -3.17 9.18 -39.48 -0.36 -3.54 16 18 C 0.12 2.22 6.60 -38.74 -0.26 1.96 16 19 O -0.26 -5.01 8.76 -19.02 -0.17 -5.18 16 20 C 0.00 0.01 6.21 -26.73 -0.17 -0.16 16 21 C -0.18 -2.37 10.48 -26.73 -0.28 -2.65 16 22 C -0.17 -2.20 10.48 -26.73 -0.28 -2.48 16 23 C 0.17 4.27 9.97 -17.11 -0.17 4.10 16 24 N -0.49 -13.76 7.85 -10.83 -0.09 -13.84 16 25 H 0.27 6.58 8.29 -40.82 -0.34 6.24 16 26 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.09 1.91 8.06 -52.48 -0.42 1.48 16 28 H 0.12 2.01 8.05 -52.49 -0.42 1.59 16 29 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.12 1.52 5.51 -52.49 -0.29 1.23 16 32 H 0.12 1.42 5.34 -51.93 -0.28 1.14 16 33 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.12 2.83 7.70 -52.48 -0.40 2.42 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -30.04 320.33 -9.70 -39.74 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.32 Total: 7.97 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -5.57 Total: -28.74 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.55 Total: -32.00 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.17 Total: -5.18 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.04 -9.70 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242792081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.839 kcal (2) G-P(sol) polarization free energy of solvation -30.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds