Wall clock time and date at job start Fri Apr 10 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86798 * 120.00161 * 2 1 4 4 H 1.48502 * 109.46897 * 274.99635 * 3 2 1 5 5 H 1.48496 * 109.47408 * 34.99734 * 3 2 1 6 6 H 1.48499 * 109.47041 * 155.00367 * 3 2 1 7 7 C 1.40081 * 119.99382 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99729 * 174.80208 * 7 2 1 9 9 C 1.40931 * 120.00282 * 354.80022 * 7 2 1 10 10 C 1.40916 * 119.67329 * 185.22471 * 9 7 2 11 11 C 1.36633 * 119.25926 * 179.72138 * 10 9 7 12 12 C 1.40335 * 118.60204 * 0.51953 * 11 10 9 13 13 C 1.47832 * 120.34907 * 179.73017 * 12 11 10 14 14 C 1.39637 * 120.18230 * 309.74757 * 13 12 11 15 15 C 1.37851 * 119.90489 * 179.97438 * 14 13 12 16 16 C 1.38518 * 120.28341 * 0.02562 * 15 14 13 17 17 C 1.38191 * 120.37356 * 359.97438 * 16 15 14 18 18 C 1.38566 * 120.08419 * 359.97438 * 17 16 15 19 19 O 1.35768 * 120.14365 * 180.02562 * 18 17 16 20 20 C 1.42909 * 116.99578 * 354.41060 * 19 18 17 21 21 C 1.52998 * 117.49613 * 224.88316 * 20 19 18 22 22 C 1.53002 * 117.49724 * 156.25948 * 20 19 18 23 23 C 1.40162 * 119.29893 * 359.45890 * 12 11 10 24 24 N 1.31176 * 120.67943 * 0.29616 * 23 12 11 25 25 H 0.96998 * 119.99858 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.36745 * 359.97438 * 10 9 7 27 27 H 1.08004 * 120.69709 * 180.25658 * 11 10 9 28 28 H 1.07998 * 120.04318 * 359.97438 * 14 13 12 29 29 H 1.07999 * 119.85821 * 180.27707 * 15 14 13 30 30 H 1.08007 * 119.81632 * 179.97438 * 16 15 14 31 31 H 1.08000 * 119.95769 * 179.97438 * 17 16 15 32 32 H 1.08999 * 115.55029 * 10.59125 * 20 19 18 33 33 H 1.08998 * 117.49779 * 359.97438 * 21 20 19 34 34 H 1.08999 * 117.50029 * 145.02207 * 21 20 19 35 35 H 1.08994 * 117.50038 * 214.98003 * 22 20 19 36 36 H 1.09005 * 117.49576 * 0.02562 * 22 20 19 37 37 H 1.08004 * 119.66285 * 180.27342 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3832 2.1073 -1.3948 5 1 1.4957 2.6199 0.8030 6 1 3.5877 1.4118 0.5916 7 6 2.0076 -1.2132 0.0005 8 1 3.0843 -1.2152 -0.0842 9 6 1.3072 -2.4311 0.1117 10 6 2.0230 -3.6398 0.2228 11 6 1.3354 -4.8151 0.3358 12 6 -0.0674 -4.7765 0.3261 13 6 -0.8499 -6.0255 0.4401 14 6 -0.5626 -7.1119 -0.3888 15 6 -1.2956 -8.2741 -0.2773 16 6 -2.3169 -8.3692 0.6535 17 6 -2.6111 -7.3012 1.4797 18 6 -1.8834 -6.1261 1.3814 19 8 -2.1711 -5.0763 2.1929 20 6 -3.3145 -5.2056 3.0403 21 6 -4.2673 -4.0117 3.1280 22 6 -3.3544 -4.3503 4.3083 23 6 -0.7187 -3.5405 0.2131 24 7 -0.0307 -2.4283 0.1111 25 1 -0.4850 0.8400 0.0004 26 1 3.1029 -3.6368 0.2226 27 1 1.8605 -5.7546 0.4265 28 1 0.2326 -7.0417 -1.1162 29 1 -1.0699 -9.1155 -0.9157 30 1 -2.8867 -9.2833 0.7341 31 1 -3.4091 -7.3826 2.2028 32 1 -3.7509 -6.2031 3.0921 33 1 -4.0218 -3.1275 2.5398 34 1 -5.3309 -4.2236 3.2375 35 1 -3.8174 -4.7849 5.1942 36 1 -2.5087 -3.6887 4.4959 37 1 -1.7981 -3.5035 0.2094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242792081.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:17 Heat of formation + Delta-G solvation = 38.370696 kcal Electronic energy + Delta-G solvation = -20871.091999 eV Core-core repulsion = 17771.990404 eV Total energy + Delta-G solvation = -3099.101595 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.20450 -39.91233 -38.63546 -36.12074 -35.65147 -33.42315 -32.39937 -30.96485 -30.20195 -27.30557 -24.88240 -23.96128 -23.49813 -23.38155 -22.14427 -21.59180 -19.43251 -19.32027 -17.53830 -17.24404 -16.72433 -16.21146 -16.01211 -15.93678 -15.58129 -15.29802 -14.91081 -14.74780 -14.35325 -14.07268 -13.74185 -13.28947 -13.10128 -12.94739 -12.83882 -12.72924 -12.55828 -12.50220 -12.27057 -11.86137 -11.65736 -11.30660 -11.22449 -10.96917 -10.30037 -10.00133 -9.50951 -9.37554 -8.75786 -8.33379 -6.51175 0.27674 0.56552 0.98675 1.20891 1.38345 1.51616 1.55777 2.20044 2.21770 2.72748 2.81449 3.03319 3.62149 3.88934 3.94817 3.95089 4.02626 4.14718 4.17697 4.28672 4.30318 4.43948 4.58722 4.67577 4.73509 4.84084 4.88294 4.94187 4.95162 5.15081 5.15819 5.16654 5.43272 5.44540 5.56672 5.66090 5.72756 5.90807 6.04366 6.10556 6.24187 6.67087 6.69028 6.92210 8.15132 8.39843 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.005056 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.562992 B = 5537.117658 C = 6754.189988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.021 3.979 3 Si 0.991 3.009 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.253 1.253 7 C -0.460 4.460 8 H 0.093 0.907 9 C 0.219 3.781 10 C -0.288 4.288 11 C -0.042 4.042 12 C -0.246 4.246 13 C -0.057 4.057 14 C -0.096 4.096 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.208 4.208 18 C 0.106 3.894 19 O -0.304 6.304 20 C -0.019 4.019 21 C -0.182 4.182 22 C -0.168 4.168 23 C 0.143 3.857 24 N -0.522 5.522 25 H 0.280 0.720 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.249 -11.925 4.460 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.201 4.201 3 Si 0.811 3.189 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.111 0.889 9 C 0.095 3.905 10 C -0.310 4.310 11 C -0.066 4.066 12 C -0.251 4.251 13 C -0.059 4.059 14 C -0.114 4.114 15 C -0.170 4.170 16 C -0.109 4.109 17 C -0.226 4.226 18 C 0.061 3.939 19 O -0.217 6.217 20 C -0.074 4.074 21 C -0.219 4.219 22 C -0.205 4.205 23 C -0.023 4.023 24 N -0.235 5.235 25 H 0.091 0.909 26 H 0.131 0.869 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.168 0.832 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.727 -10.766 4.403 13.964 hybrid contribution 0.771 0.190 0.046 0.795 sum -6.956 -10.576 4.449 13.418 Atomic orbital electron populations 1.70258 1.09183 1.29282 1.28727 1.27127 0.95719 1.04888 0.92407 0.85067 0.79089 0.75290 0.79482 1.18450 1.19229 1.17597 1.20018 0.95289 0.90570 1.43154 0.88883 1.19110 0.88800 0.93446 0.89141 1.21598 0.99572 0.93797 1.16024 1.20916 0.92968 0.97277 0.95394 1.19175 0.93391 0.93135 1.19431 1.18317 0.96563 0.94436 0.96551 1.21264 1.00052 0.92424 0.97698 1.21280 0.97114 0.97812 1.00762 1.21310 0.97008 0.98470 0.94146 1.21393 1.03420 0.93070 1.04712 1.19376 0.95844 0.87640 0.91065 1.86133 1.45470 1.39034 1.51103 1.23452 0.89770 0.98440 0.95771 1.23486 0.98273 0.98818 1.01365 1.23397 1.01837 1.02358 0.92920 1.22694 0.98210 0.88430 0.92945 1.68695 1.07925 1.27548 1.19327 0.90940 0.86854 0.85684 0.85668 0.83174 0.82424 0.83034 0.83193 0.90585 0.84632 0.84274 0.90472 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -42.42 11.46 21.85 0.25 -42.16 16 2 C 0.02 1.09 5.49 85.30 0.47 1.56 16 3 Si 0.99 38.92 29.56 68.60 2.03 40.95 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 6 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.46 -25.85 9.11 23.38 0.21 -25.63 16 8 H 0.09 4.83 7.85 -2.91 -0.02 4.80 16 9 C 0.22 12.85 6.54 40.16 0.26 13.12 16 10 C -0.29 -14.90 9.76 22.55 0.22 -14.68 16 11 C -0.04 -1.98 9.60 22.40 0.22 -1.76 16 12 C -0.25 -11.86 5.31 -19.76 -0.10 -11.97 16 13 C -0.06 -2.29 5.50 -19.93 -0.11 -2.39 16 14 C -0.10 -3.14 9.54 22.52 0.21 -2.92 16 15 C -0.15 -3.78 10.03 22.24 0.22 -3.56 16 16 C -0.09 -2.08 10.03 22.33 0.22 -1.85 16 17 C -0.21 -5.57 9.18 22.34 0.21 -5.37 16 18 C 0.11 3.83 6.60 22.82 0.15 3.98 16 19 O -0.30 -11.78 8.76 -90.96 -0.80 -12.58 16 20 C -0.02 -0.51 6.21 30.59 0.19 -0.32 16 21 C -0.18 -4.57 10.48 30.60 0.32 -4.25 16 22 C -0.17 -4.13 10.48 30.60 0.32 -3.81 16 23 C 0.14 7.75 9.97 85.26 0.85 8.60 16 24 N -0.52 -31.43 7.85 -188.18 -1.48 -32.91 16 25 H 0.28 14.17 8.29 -92.71 -0.77 13.40 16 26 H 0.11 5.34 8.06 -2.91 -0.02 5.31 16 27 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 28 H 0.13 3.92 8.05 -2.91 -0.02 3.89 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 30 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.15 3.06 5.51 -2.91 -0.02 3.04 16 32 H 0.15 3.05 5.34 -2.39 -0.01 3.03 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.11 5.92 7.70 -2.91 -0.02 5.90 16 Total: -1.00 -71.47 320.33 4.95 -66.52 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 1.08 Total: 31.45 kcal Atomic # 6 Polarization: -55.13 SS G_CDS: 3.86 Total: -51.27 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -1.23 Total: -75.07 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.80 Total: -12.58 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -71.47 4.95 -66.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242792081.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.891 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds