Wall clock time and date at job start Fri Apr 10 2020 14:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86794 * 119.99847 * 2 1 4 4 H 1.48501 * 109.46973 * 239.99495 * 3 2 1 5 5 H 1.48499 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46945 * 120.00011 * 3 2 1 7 7 C 1.39933 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99815 * 160.99583 * 7 2 1 9 9 C 1.41437 * 120.00136 * 340.99664 * 7 2 1 10 10 C 1.40812 * 120.60167 * 148.59720 * 9 7 2 11 11 N 1.31498 * 120.66640 * 179.73994 * 10 9 7 12 12 C 1.31930 * 122.12785 * 0.26122 * 11 10 9 13 13 C 1.39705 * 121.14494 * 359.97438 * 12 11 10 14 14 C 1.48357 * 120.40896 * 180.02562 * 13 12 11 15 15 C 1.39295 * 120.14454 * 129.72251 * 14 13 12 16 16 C 1.38010 * 119.93255 * 179.76658 * 15 14 13 17 17 C 1.38384 * 120.23452 * 0.50801 * 16 15 14 18 18 C 1.38184 * 120.30042 * 359.74854 * 17 16 15 19 19 C 1.38581 * 120.06642 * 359.97438 * 18 17 16 20 20 O 1.35846 * 120.12169 * 180.02562 * 19 18 17 21 21 C 1.42897 * 116.99593 * 5.96909 * 20 19 18 22 22 C 1.53001 * 117.49735 * 223.84135 * 21 20 19 23 23 C 1.53000 * 117.49779 * 155.18419 * 21 20 19 24 24 C 1.39188 * 119.17629 * 0.02562 * 13 12 11 25 25 H 0.97005 * 119.99833 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.66349 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.43122 * 179.97438 * 12 11 10 28 28 H 1.08002 * 120.03114 * 0.02562 * 15 14 13 29 29 H 1.07999 * 119.88032 * 180.27870 * 16 15 14 30 30 H 1.07994 * 119.84893 * 179.76620 * 17 16 15 31 31 H 1.08004 * 119.96354 * 180.02562 * 18 17 16 32 32 H 1.08997 * 115.55659 * 9.51025 * 21 20 19 33 33 H 1.09001 * 117.49779 * 0.02562 * 22 21 20 34 34 H 1.08995 * 117.50208 * 145.02031 * 22 21 20 35 35 H 1.09001 * 117.50101 * 214.97892 * 23 21 20 36 36 H 1.09003 * 117.50122 * 359.97438 * 23 21 20 37 37 H 1.07995 * 120.95887 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0438 -1.2375 -0.3040 9 6 1.3585 -2.4032 0.3999 10 6 1.7228 -3.6415 -0.1629 11 7 1.1234 -4.7505 0.2112 12 6 0.1621 -4.7581 1.1147 13 6 -0.2676 -3.5759 1.7226 14 6 -1.3496 -3.6034 2.7372 15 6 -1.1744 -2.9676 3.9641 16 6 -2.1857 -2.9918 4.9029 17 6 -3.3703 -3.6547 4.6341 18 6 -3.5524 -4.2932 3.4222 19 6 -2.5474 -4.2719 2.4683 20 8 -2.7254 -4.8987 1.2763 21 6 -4.0192 -5.4483 1.0194 22 6 -4.0828 -6.8484 0.4056 23 6 -4.4345 -5.6238 -0.4427 24 6 0.3322 -2.3719 1.3645 25 1 -0.4850 0.8401 -0.0004 26 1 2.5055 -3.6813 -0.9060 27 1 -0.3008 -5.6944 1.3893 28 1 -0.2496 -2.4527 4.1789 29 1 -2.0506 -2.4948 5.8522 30 1 -4.1561 -3.6729 5.3747 31 1 -4.4793 -4.8086 3.2180 32 1 -4.7960 -5.1764 1.7340 33 1 -3.1378 -7.3504 0.1983 34 1 -4.9015 -7.4974 0.7162 35 1 -5.4846 -5.4676 -0.6899 36 1 -3.7211 -5.3196 -1.2086 37 1 0.0229 -1.4411 1.8164 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242792111.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:20 Heat of formation + Delta-G solvation = 42.638859 kcal Electronic energy + Delta-G solvation = -21012.047297 eV Core-core repulsion = 17913.130783 eV Total energy + Delta-G solvation = -3098.916514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.99999 -38.27031 -37.42731 -35.03749 -33.96916 -32.31371 -30.32383 -29.70712 -28.14765 -25.55257 -23.75318 -22.73666 -22.41957 -21.64858 -20.80474 -20.18760 -18.23833 -17.19129 -15.78969 -15.75026 -15.27970 -15.14208 -14.99342 -14.62877 -14.34713 -13.80452 -13.71419 -13.40833 -12.71531 -12.30428 -12.17081 -11.85133 -11.64857 -11.54326 -11.50788 -11.40121 -11.19892 -11.06734 -10.78532 -10.58722 -10.40728 -9.92306 -9.81025 -9.31230 -8.85933 -8.15682 -8.08554 -7.70226 -7.23650 -6.81944 -4.45311 1.54053 1.73974 2.69184 2.92335 3.04638 3.07186 3.19730 3.30962 3.77497 3.89834 4.16459 4.60794 4.66684 4.90987 5.01506 5.08136 5.17598 5.32431 5.44789 5.59359 5.60753 5.69380 5.78527 5.93761 6.00855 6.09420 6.13253 6.28641 6.55519 6.61422 6.64841 6.72871 6.81479 7.02728 7.09778 7.16527 7.24243 7.69685 7.78634 7.85647 7.93716 8.43057 8.71014 8.74208 9.64172 10.13932 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016335 B = 0.005417 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.731900 B = 5167.730027 C = 5831.589979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.079 3.921 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.465 4.465 8 H 0.083 0.917 9 C 0.068 3.932 10 C -0.012 4.012 11 N -0.474 5.474 12 C 0.001 3.999 13 C -0.085 4.085 14 C -0.040 4.040 15 C -0.074 4.074 16 C -0.158 4.158 17 C -0.095 4.095 18 C -0.213 4.213 19 C 0.137 3.863 20 O -0.263 6.263 21 C 0.001 3.999 22 C -0.184 4.184 23 C -0.173 4.173 24 C -0.110 4.110 25 H 0.283 0.717 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.129 0.871 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 -4.746 5.964 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.101 0.899 9 C 0.064 3.936 10 C -0.172 4.172 11 N -0.181 5.181 12 C -0.157 4.157 13 C -0.087 4.087 14 C -0.042 4.042 15 C -0.093 4.093 16 C -0.176 4.176 17 C -0.113 4.113 18 C -0.231 4.231 19 C 0.091 3.909 20 O -0.176 6.176 21 C -0.056 4.056 22 C -0.222 4.222 23 C -0.210 4.210 24 C -0.136 4.136 25 H 0.094 0.906 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.959 -5.409 5.404 11.778 hybrid contribution -0.269 1.695 0.399 1.762 sum -9.228 -3.714 5.803 11.516 Atomic orbital electron populations 1.69812 1.07624 1.29653 1.34665 1.25884 0.94673 1.01243 0.92172 0.86381 0.80183 0.80207 0.80081 1.18896 1.20360 1.18749 1.19406 0.98702 0.91036 1.40329 0.89933 1.18406 0.91558 0.93752 0.89926 1.22618 1.03526 0.88519 1.02567 1.66961 1.07543 1.31632 1.11969 1.21701 0.98926 0.95464 0.99604 1.19252 0.96190 0.95515 0.97746 1.18344 0.92429 0.98465 0.94930 1.21127 0.99074 0.97308 0.91755 1.20923 0.94202 1.02618 0.99870 1.20802 0.97314 0.97225 0.95996 1.21058 0.99636 1.06952 0.95480 1.18979 0.93942 0.93197 0.84742 1.86215 1.29905 1.68113 1.33332 1.22990 0.86544 0.98463 0.97560 1.23436 1.03825 0.91123 1.03777 1.23340 1.02375 1.01301 0.93978 1.21539 0.98849 0.95259 0.97963 0.90648 0.85603 0.86330 0.85344 0.86257 0.86401 0.85706 0.86191 0.87731 0.88134 0.87915 0.87601 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 11.55 55.55 0.64 -19.86 16 2 C 0.08 1.95 5.09 -17.34 -0.09 1.86 16 3 Si 0.91 18.38 29.60 -169.99 -5.03 13.35 16 4 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.10 9.04 -37.73 -0.34 -12.45 16 8 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 9 C 0.07 1.81 5.49 -106.71 -0.59 1.22 16 10 C -0.01 -0.30 10.96 -16.72 -0.18 -0.48 16 11 N -0.47 -12.12 10.32 -12.28 -0.13 -12.25 16 12 C 0.00 0.02 9.96 -16.96 -0.17 -0.15 16 13 C -0.08 -2.03 5.27 -104.83 -0.55 -2.58 16 14 C -0.04 -0.83 5.50 -104.76 -0.58 -1.40 16 15 C -0.07 -1.33 9.53 -39.27 -0.37 -1.70 16 16 C -0.16 -2.33 10.03 -39.61 -0.40 -2.73 16 17 C -0.10 -1.32 10.03 -39.55 -0.40 -1.71 16 18 C -0.21 -3.21 9.11 -39.47 -0.36 -3.57 16 19 C 0.14 2.54 6.59 -38.88 -0.26 2.29 16 20 O -0.26 -4.96 8.75 -19.26 -0.17 -5.13 16 21 C 0.00 0.02 6.13 -26.73 -0.16 -0.14 16 22 C -0.18 -2.17 10.48 -26.69 -0.28 -2.45 16 23 C -0.17 -2.16 10.48 -26.69 -0.28 -2.44 16 24 C -0.11 -2.85 8.28 -38.23 -0.32 -3.16 16 25 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 26 H 0.13 3.01 8.06 -52.49 -0.42 2.58 16 27 H 0.12 2.71 7.68 -52.49 -0.40 2.30 16 28 H 0.13 2.22 8.05 -52.49 -0.42 1.80 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.13 1.52 5.65 -52.48 -0.30 1.23 16 32 H 0.12 1.41 5.50 -51.93 -0.29 1.12 16 33 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.12 3.07 6.82 -52.49 -0.36 2.71 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -29.45 320.16 -9.46 -38.91 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.27 Total: 9.76 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: -5.32 Total: -29.60 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.51 Total: -32.11 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.17 Total: -5.13 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.45 -9.46 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242792111.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.547 kcal (2) G-P(sol) polarization free energy of solvation -29.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds