Wall clock time and date at job start Fri Apr 10 2020 14:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31543 * 1 3 3 Si 1.86805 * 120.00032 * 2 1 4 4 H 1.48494 * 109.47126 * 269.99746 * 3 2 1 5 5 H 1.48500 * 109.46855 * 30.00046 * 3 2 1 6 6 H 1.48504 * 109.46798 * 149.99973 * 3 2 1 7 7 C 1.38656 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00482 * 179.97438 * 7 2 1 9 9 O 1.34813 * 120.00009 * 0.02562 * 7 2 1 10 10 C 1.35642 * 117.00309 * 185.06702 * 9 7 2 11 11 C 1.38776 * 120.13833 * 354.39970 * 10 9 7 12 12 C 1.38086 * 120.05323 * 180.02562 * 11 10 9 13 13 C 1.38467 * 120.33383 * 359.97438 * 12 11 10 14 14 C 1.37989 * 120.27552 * 0.02562 * 13 12 11 15 15 C 1.39333 * 119.94202 * 0.24789 * 14 13 12 16 16 C 1.48207 * 120.16044 * 179.74607 * 15 14 13 17 17 C 1.39415 * 119.73808 * 359.72480 * 16 15 14 18 18 C 1.38366 * 119.06565 * 179.76972 * 17 16 15 19 19 C 1.38819 * 118.51435 * 0.49930 * 18 17 16 20 20 C 1.50697 * 120.30683 * 179.72311 * 19 18 17 21 21 C 1.52996 * 117.50145 * 188.64232 * 20 19 18 22 22 C 1.52994 * 60.00183 * 252.51464 * 21 20 19 23 23 C 1.38232 * 119.38055 * 359.74609 * 19 18 17 24 24 N 1.31767 * 120.90226 * 359.97438 * 23 19 18 25 25 H 0.97000 * 119.99902 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.97230 * 0.04761 * 11 10 9 27 27 H 1.07998 * 119.83600 * 179.97438 * 12 11 10 28 28 H 1.08003 * 119.86043 * 180.02562 * 13 12 11 29 29 H 1.08001 * 120.02497 * 179.97438 * 14 13 12 30 30 H 1.08000 * 120.46778 * 0.02562 * 17 16 15 31 31 H 1.07992 * 120.74301 * 180.22842 * 18 17 16 32 32 H 1.09003 * 115.55228 * 334.35556 * 20 19 18 33 33 H 1.09005 * 117.49559 * 0.02562 * 21 20 19 34 34 H 1.08995 * 117.50095 * 145.01699 * 21 20 19 35 35 H 1.09005 * 117.49707 * 252.51034 * 22 21 20 36 36 H 1.08994 * 117.50269 * 107.49152 * 22 21 20 37 37 H 1.08006 * 119.55054 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5470 1.4401 0.7001 7 6 2.0087 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3683 -0.0016 10 6 2.0693 -3.5036 0.1047 11 6 3.4556 -3.4404 0.0913 12 6 4.2017 -4.5973 0.1991 13 6 3.5739 -5.8254 0.3214 14 6 2.1963 -5.9042 0.3363 15 6 1.4322 -4.7446 0.2225 16 6 -0.0477 -4.8241 0.2322 17 6 -0.6728 -6.0647 0.3498 18 6 -2.0552 -6.1224 0.3622 19 6 -2.7690 -4.9374 0.2459 20 6 -4.2758 -4.9539 0.2484 21 6 -4.9973 -3.6465 -0.0849 22 6 -4.9890 -4.1708 1.3524 23 6 -2.0845 -3.7423 0.1273 24 7 -0.7672 -3.7144 0.1239 25 1 -0.4850 0.8400 -0.0004 26 1 3.9512 -2.4855 -0.0031 27 1 5.2803 -4.5441 0.1879 28 1 4.1650 -6.7255 0.4056 29 1 1.7109 -6.8642 0.4315 30 1 -0.0863 -6.9677 0.4343 31 1 -2.5675 -7.0684 0.4558 32 1 -4.7364 -5.8830 -0.0875 33 1 -4.3819 -2.7745 -0.3064 34 1 -5.9325 -3.7152 -0.6404 35 1 -5.9190 -4.5844 1.7426 36 1 -4.3684 -3.6436 2.0769 37 1 -2.6371 -2.8188 0.0362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580558.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:08 Heat of formation + Delta-G solvation = 67.716462 kcal Electronic energy + Delta-G solvation = -20945.714861 eV Core-core repulsion = 17847.885793 eV Total energy + Delta-G solvation = -3097.829067 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.92679 -38.74985 -36.87552 -36.20470 -32.34436 -31.83026 -31.73466 -29.05084 -28.31366 -25.34393 -24.15498 -23.21866 -22.17764 -21.63701 -20.71532 -20.03419 -17.92142 -17.25106 -16.50535 -15.65770 -15.27625 -14.73190 -14.56132 -14.16906 -14.08739 -13.79631 -13.54084 -13.30265 -13.01731 -12.43130 -12.38913 -12.06718 -11.64769 -11.47720 -11.37582 -11.27027 -10.92159 -10.77151 -10.68730 -10.63675 -10.42189 -10.23609 -9.34962 -9.15419 -8.90206 -8.76640 -8.37927 -7.71544 -6.97731 -6.40294 -3.95292 1.27316 1.93260 2.40008 2.49738 3.14205 3.15024 3.19053 3.94216 3.97862 4.41050 4.68263 4.83320 4.96970 5.04050 5.12732 5.17246 5.22145 5.30474 5.32737 5.46497 5.63087 5.69423 5.72313 5.80584 5.89365 6.01797 6.12522 6.18577 6.22456 6.34903 6.39335 6.57754 6.71058 6.73683 6.85454 7.11110 7.15537 7.36496 7.37951 7.44717 7.82446 8.00485 8.89999 9.02180 9.77911 10.74000 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.006698 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.858461 B = 4179.654509 C = 6384.897888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.398 4.398 8 H 0.090 0.910 9 O -0.117 6.117 10 C 0.175 3.825 11 C -0.240 4.240 12 C -0.061 4.061 13 C -0.226 4.226 14 C -0.049 4.049 15 C -0.147 4.147 16 C 0.190 3.810 17 C -0.185 4.185 18 C -0.074 4.074 19 C -0.141 4.141 20 C -0.104 4.104 21 C -0.179 4.179 22 C -0.173 4.173 23 C 0.116 3.884 24 N -0.424 5.424 25 H 0.268 0.732 26 H 0.129 0.871 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -9.111 0.904 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.161 4.161 3 Si 0.761 3.239 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.475 4.475 8 H 0.107 0.893 9 O -0.015 6.015 10 C 0.117 3.883 11 C -0.259 4.259 12 C -0.079 4.079 13 C -0.246 4.246 14 C -0.069 4.069 15 C -0.149 4.149 16 C 0.055 3.945 17 C -0.206 4.206 18 C -0.099 4.099 19 C -0.143 4.143 20 C -0.123 4.123 21 C -0.215 4.215 22 C -0.210 4.210 23 C -0.043 4.043 24 N -0.132 5.132 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.406 -8.030 0.803 9.195 hybrid contribution 0.130 -0.025 0.071 0.150 sum -4.276 -8.055 0.874 9.161 Atomic orbital electron populations 1.70111 1.05777 1.27224 1.43607 1.25259 0.95774 0.98617 0.96467 0.85799 0.79071 0.80396 0.78674 1.19931 1.20289 1.19234 1.21471 0.91831 0.81547 1.52622 0.89291 1.84261 1.32800 1.10500 1.73951 1.19364 0.89797 0.87851 0.91321 1.21151 0.93633 0.99131 1.12034 1.20838 0.98486 0.92413 0.96207 1.20447 0.93967 0.97026 1.13111 1.20698 0.93539 0.95851 0.96766 1.17610 0.89512 0.91665 1.16134 1.19865 0.93149 0.88253 0.93219 1.21950 0.94752 0.98664 1.05185 1.21070 0.93596 0.97448 0.97829 1.20084 0.93976 0.94852 1.05403 1.20819 0.90615 0.96371 1.04481 1.23073 1.02198 0.97812 0.98452 1.23023 1.01971 1.03859 0.92174 1.22734 0.90308 0.96714 0.94537 1.68223 1.06328 1.29176 1.09426 0.92249 0.85379 0.87452 0.87431 0.86758 0.85442 0.85846 0.87464 0.87903 0.88689 0.88833 0.88526 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.86 13.67 55.48 0.76 -23.10 16 2 C 0.05 1.24 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.40 -11.08 9.49 30.89 0.29 -10.79 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 9 O -0.12 -3.33 7.59 0.43 0.00 -3.33 16 10 C 0.18 4.37 6.65 -38.72 -0.26 4.11 16 11 C -0.24 -5.30 9.16 -39.44 -0.36 -5.67 16 12 C -0.06 -1.13 10.03 -39.55 -0.40 -1.52 16 13 C -0.23 -3.95 10.03 -39.59 -0.40 -4.35 16 14 C -0.05 -0.91 9.41 -39.27 -0.37 -1.28 16 15 C -0.15 -3.27 5.89 -104.74 -0.62 -3.89 16 16 C 0.19 4.15 6.73 -82.96 -0.56 3.59 16 17 C -0.19 -3.23 9.46 -39.10 -0.37 -3.60 16 18 C -0.07 -1.15 9.88 -39.32 -0.39 -1.54 16 19 C -0.14 -2.33 5.63 -104.41 -0.59 -2.92 16 20 C -0.10 -1.36 6.06 -91.78 -0.56 -1.91 16 21 C -0.18 -2.19 9.86 -26.74 -0.26 -2.45 16 22 C -0.17 -2.07 10.17 -26.73 -0.27 -2.35 16 23 C 0.12 2.36 10.46 -17.58 -0.18 2.17 16 24 N -0.42 -10.17 8.16 -9.79 -0.08 -10.25 16 25 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 26 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 29 H 0.11 1.72 6.18 -52.49 -0.32 1.40 16 30 H 0.13 1.84 6.20 -52.49 -0.33 1.51 16 31 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.40 6.19 -51.93 -0.32 1.08 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.15 2.92 6.02 -52.48 -0.32 2.60 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -31.19 315.19 -8.92 -40.11 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.95 Total: 7.70 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -5.38 Total: -31.23 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.68 Total: -33.35 kcal Atomic # 8 Polarization: -3.33 SS G_CDS: 0.00 Total: -3.33 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.19 -8.92 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580558.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.830 kcal (2) G-P(sol) polarization free energy of solvation -31.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds