Wall clock time and date at job start Fri Apr 10 2020 14:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86798 * 120.00537 * 2 1 4 4 H 1.48491 * 109.47321 * 270.00051 * 3 2 1 5 5 H 1.48502 * 109.46880 * 30.00048 * 3 2 1 6 6 H 1.48499 * 109.46939 * 149.99686 * 3 2 1 7 7 C 1.38667 * 119.99439 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99519 * 180.02562 * 7 2 1 9 9 O 1.34814 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.35634 * 117.00070 * 185.06064 * 9 7 2 11 11 C 1.38782 * 120.13983 * 354.40450 * 10 9 7 12 12 C 1.38088 * 120.05101 * 180.02562 * 11 10 9 13 13 C 1.38460 * 120.33423 * 359.97438 * 12 11 10 14 14 C 1.37985 * 120.28241 * 359.71952 * 13 12 11 15 15 C 1.39339 * 119.93500 * 0.57934 * 14 13 12 16 16 C 1.48202 * 120.16238 * 179.70077 * 15 14 13 17 17 C 1.39418 * 119.72423 * 359.70243 * 16 15 14 18 18 C 1.38293 * 118.89222 * 180.02562 * 17 16 15 19 19 C 1.38925 * 118.69842 * 359.92359 * 18 17 16 20 20 C 1.38248 * 119.51555 * 0.10233 * 19 18 17 21 21 N 1.32201 * 120.40168 * 359.92166 * 20 19 18 22 22 C 1.51501 * 109.58186 * 179.97438 * 20 19 18 23 23 C 1.54594 * 105.22942 * 17.25196 * 22 20 19 24 24 C 1.51262 * 130.56277 * 180.02562 * 19 18 17 25 25 H 0.97002 * 119.99672 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.97340 * 359.96972 * 11 10 9 27 27 H 1.08007 * 119.82904 * 179.97438 * 12 11 10 28 28 H 1.08009 * 119.85683 * 180.02562 * 13 12 11 29 29 H 1.07990 * 120.03374 * 180.28419 * 14 13 12 30 30 H 1.07997 * 120.55474 * 0.03341 * 17 16 15 31 31 H 1.08002 * 120.65352 * 180.02562 * 18 17 16 32 32 H 1.09003 * 110.30114 * 136.17622 * 22 20 19 33 33 H 1.09005 * 110.29724 * 258.21116 * 22 20 19 34 34 H 1.08997 * 110.90533 * 215.40287 * 23 22 20 35 35 H 1.09003 * 110.84760 * 91.77222 * 23 22 20 36 36 H 1.09000 * 110.30960 * 281.78892 * 24 19 18 37 37 H 1.08997 * 110.30799 * 43.86196 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6526 0.7001 6 1 3.5471 1.4399 0.7001 7 6 2.0087 -1.2010 0.0005 8 1 3.0887 -1.2010 0.0010 9 8 1.3345 -2.3684 0.0005 10 6 2.0691 -3.5036 0.1077 11 6 3.4554 -3.4405 0.0942 12 6 4.2014 -4.5974 0.2029 13 6 3.5735 -5.8253 0.3262 14 6 2.1961 -5.9035 0.3475 15 6 1.4320 -4.7440 0.2324 16 6 -0.0479 -4.8227 0.2479 17 6 -0.6728 -6.0628 0.3720 18 6 -2.0547 -6.1164 0.3841 19 6 -2.7693 -4.9302 0.2735 20 6 -2.0880 -3.7333 0.1527 21 7 -0.7661 -3.7139 0.1438 22 6 -3.0797 -2.5929 0.0477 23 6 -4.4197 -3.1718 0.5568 24 6 -4.2607 -4.6782 0.2572 25 1 -0.4850 0.8401 -0.0004 26 1 3.9511 -2.4859 -0.0022 27 1 5.2801 -4.5442 0.1916 28 1 4.1646 -6.7254 0.4111 29 1 1.7106 -6.8628 0.4485 30 1 -0.0876 -6.9665 0.4575 31 1 -2.5683 -7.0617 0.4793 32 1 -2.7654 -1.7593 0.6759 33 1 -3.1755 -2.2692 -0.9888 34 1 -5.2598 -2.7538 0.0021 35 1 -4.5357 -2.9984 1.6267 36 1 -4.6739 -4.9162 -0.7230 37 1 -4.7529 -5.2704 1.0285 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:11 Heat of formation + Delta-G solvation = 37.891705 kcal Electronic energy + Delta-G solvation = -21308.728542 eV Core-core repulsion = 18209.606176 eV Total energy + Delta-G solvation = -3099.122366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10161 -38.80403 -36.43793 -35.58072 -32.30724 -31.95837 -31.06031 -28.92355 -27.74008 -27.07683 -25.30588 -23.21085 -22.36497 -20.82651 -20.36708 -20.13383 -17.90758 -17.05016 -16.06516 -15.56867 -15.18807 -14.74617 -14.52882 -14.13339 -13.91226 -13.67602 -13.26173 -12.83897 -12.80335 -12.50863 -12.42111 -12.18257 -11.65396 -11.61932 -11.35585 -11.22617 -10.90137 -10.79936 -10.73191 -10.62145 -10.60854 -10.41183 -9.32803 -9.18576 -8.80681 -8.64442 -8.23418 -7.68227 -6.95548 -6.38709 -3.93670 1.33375 1.95168 2.41955 2.54092 3.14553 3.15449 3.19303 3.98706 4.34399 4.53583 4.82708 4.88427 5.11257 5.17048 5.26630 5.28197 5.32534 5.44423 5.64909 5.66916 5.76421 5.81552 5.93353 6.02990 6.05810 6.09581 6.26011 6.27650 6.43208 6.50079 6.58769 6.65786 6.73792 6.77657 6.87105 7.13145 7.17816 7.38374 7.40754 7.47327 7.83860 8.01837 8.95468 9.03569 9.79771 10.75252 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.007809 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.601577 B = 3584.775686 C = 5855.117505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.399 4.399 8 H 0.089 0.911 9 O -0.116 6.116 10 C 0.175 3.825 11 C -0.241 4.241 12 C -0.061 4.061 13 C -0.227 4.227 14 C -0.049 4.049 15 C -0.146 4.146 16 C 0.201 3.799 17 C -0.191 4.191 18 C -0.068 4.068 19 C -0.190 4.190 20 C 0.141 3.859 21 N -0.426 5.426 22 C -0.067 4.067 23 C -0.119 4.119 24 C -0.069 4.069 25 H 0.267 0.733 26 H 0.128 0.872 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 -8.176 0.720 9.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.161 4.161 3 Si 0.760 3.240 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.475 4.475 8 H 0.106 0.894 9 O -0.014 6.014 10 C 0.116 3.884 11 C -0.260 4.260 12 C -0.080 4.080 13 C -0.246 4.246 14 C -0.068 4.068 15 C -0.148 4.148 16 C 0.065 3.935 17 C -0.211 4.211 18 C -0.093 4.093 19 C -0.192 4.192 20 C 0.002 3.998 21 N -0.134 5.134 22 C -0.105 4.105 23 C -0.157 4.157 24 C -0.107 4.107 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.352 -7.102 0.618 8.353 hybrid contribution 0.313 -0.075 0.057 0.327 sum -4.039 -7.177 0.675 8.263 Atomic orbital electron populations 1.70122 1.05703 1.27093 1.43577 1.25248 0.95785 0.98543 0.96506 0.85811 0.79086 0.80472 0.78639 1.19976 1.20306 1.19278 1.21467 0.91809 0.81591 1.52667 0.89351 1.84270 1.32725 1.10465 1.73946 1.19366 0.89787 0.87882 0.91315 1.21150 0.93634 0.99121 1.12083 1.20833 0.98466 0.92412 0.96254 1.20439 0.93952 0.97024 1.13154 1.20689 0.93523 0.95827 0.96806 1.17611 0.89419 0.91713 1.16062 1.19641 0.92863 0.87670 0.93371 1.21871 0.94588 0.98709 1.05950 1.20740 0.93430 0.96992 0.98165 1.21421 0.96950 0.94920 1.05912 1.21822 0.89917 0.94376 0.93734 1.67290 1.06049 1.29842 1.10176 1.20946 0.90591 0.96181 1.02791 1.22364 0.97318 0.94647 1.01379 1.20840 0.91624 0.96788 1.01467 0.92324 0.85398 0.87471 0.87440 0.86757 0.85328 0.86098 0.89033 0.89844 0.90640 0.91123 0.90831 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.58 13.67 55.48 0.76 -22.82 16 2 C 0.05 1.25 5.49 -17.51 -0.10 1.15 16 3 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.40 -11.13 9.49 30.89 0.29 -10.83 16 8 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 9 O -0.12 -3.32 7.60 0.45 0.00 -3.32 16 10 C 0.18 4.40 6.65 -38.72 -0.26 4.15 16 11 C -0.24 -5.35 9.16 -39.44 -0.36 -5.72 16 12 C -0.06 -1.14 10.03 -39.55 -0.40 -1.54 16 13 C -0.23 -3.99 10.03 -39.59 -0.40 -4.39 16 14 C -0.05 -0.92 9.41 -39.26 -0.37 -1.29 16 15 C -0.15 -3.29 5.89 -104.74 -0.62 -3.91 16 16 C 0.20 4.48 6.73 -83.03 -0.56 3.92 16 17 C -0.19 -3.43 9.47 -39.12 -0.37 -3.80 16 18 C -0.07 -1.10 10.16 -39.31 -0.40 -1.50 16 19 C -0.19 -3.28 6.16 -104.09 -0.64 -3.92 16 20 C 0.14 2.96 7.31 -82.04 -0.60 2.36 16 21 N -0.43 -10.45 8.14 -5.76 -0.05 -10.49 16 22 C -0.07 -1.21 6.78 -26.65 -0.18 -1.39 16 23 C -0.12 -1.59 7.10 -25.15 -0.18 -1.76 16 24 C -0.07 -0.92 6.76 -26.87 -0.18 -1.10 16 25 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 26 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 27 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 28 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.11 1.75 6.18 -52.49 -0.32 1.42 16 30 H 0.13 1.91 6.20 -52.49 -0.33 1.58 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 311.47 15.07 4.69 4.69 Total: -1.00 -31.57 311.47 -9.09 -40.66 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -4.16 Total: 5.50 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -5.31 Total: -29.57 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.71 Total: -33.31 kcal Atomic # 8 Polarization: -3.32 SS G_CDS: 0.00 Total: -3.32 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.57 -9.09 -40.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.549 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds