Wall clock time and date at job start Fri Apr 10 2020 14:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48502 * 109.47321 * 270.00317 * 3 2 1 5 5 H 1.48504 * 109.46831 * 29.99996 * 3 2 1 6 6 H 1.48489 * 109.47494 * 150.00162 * 3 2 1 7 7 C 1.38651 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99950 * 359.97438 * 7 2 1 9 9 O 1.34809 * 120.00537 * 179.97438 * 7 2 1 10 10 C 1.35655 * 117.00398 * 185.09212 * 9 7 2 11 11 C 1.38764 * 120.13731 * 354.40490 * 10 9 7 12 12 C 1.38109 * 120.05198 * 180.02562 * 11 10 9 13 13 C 1.38445 * 120.32081 * 359.74760 * 12 11 10 14 14 C 1.38010 * 120.27256 * 0.50724 * 13 12 11 15 15 C 1.39293 * 119.94566 * 359.49435 * 14 13 12 16 16 C 1.48287 * 120.15961 * 180.22932 * 15 14 13 17 17 C 1.39429 * 120.05634 * 65.00303 * 16 15 14 18 18 C 1.38021 * 119.69363 * 180.02562 * 17 16 15 19 19 C 1.37962 * 120.37430 * 0.02562 * 18 17 16 20 20 C 1.39750 * 120.54811 * 0.02562 * 19 18 17 21 21 C 1.38412 * 119.10117 * 359.67682 * 20 19 18 22 22 C 1.51202 * 108.59501 * 179.80917 * 21 20 19 23 23 C 1.53757 * 104.52147 * 0.41714 * 22 21 20 24 24 N 1.39622 * 129.25005 * 179.97438 * 20 19 18 25 25 H 0.97004 * 120.00363 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.97098 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.83963 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.86385 * 180.25838 * 13 12 11 29 29 H 1.08001 * 120.02865 * 179.76872 * 14 13 12 30 30 H 1.08011 * 120.15546 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.81896 * 179.97438 * 18 17 16 32 32 H 1.07997 * 119.72516 * 179.97438 * 19 18 17 33 33 H 1.09000 * 110.63321 * 241.55015 * 22 21 20 34 34 H 1.08998 * 110.21882 * 119.06818 * 22 21 20 35 35 H 1.09004 * 110.30050 * 240.83375 * 23 22 21 36 36 H 1.08995 * 110.39369 * 118.71784 * 23 22 21 37 37 H 0.96999 * 124.96241 * 0.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5470 1.4402 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 1.4688 -2.1361 -0.0005 9 8 3.3569 -1.2008 -0.0011 10 6 3.9727 -2.4047 -0.1088 11 6 3.2249 -3.5735 -0.0955 12 6 3.8537 -4.7982 -0.2048 13 6 5.2304 -4.8681 -0.3334 14 6 5.9877 -3.7143 -0.3429 15 6 5.3651 -2.4731 -0.2334 16 6 6.1737 -1.2301 -0.2483 17 6 6.8851 -0.8735 -1.3932 18 6 7.6357 0.2848 -1.3986 19 6 7.6856 1.0889 -0.2787 20 6 6.9786 0.7432 0.8761 21 6 6.2207 -0.4149 0.8800 22 6 5.5674 -0.5591 2.2359 23 6 6.0358 0.6760 3.0228 24 7 6.9003 1.4141 2.0981 25 1 -0.4851 0.8401 0.0004 26 1 2.1503 -3.5254 0.0013 27 1 3.2683 -5.7058 -0.1936 28 1 5.7141 -5.8296 -0.4225 29 1 7.0617 -3.7735 -0.4397 30 1 6.8496 -1.5010 -2.2716 31 1 8.1878 0.5628 -2.2842 32 1 8.2766 1.9927 -0.2943 33 1 5.9012 -1.4727 2.7279 34 1 4.4823 -0.5558 2.1336 35 1 6.5987 0.3712 3.9052 36 1 5.1818 1.2881 3.3126 37 1 7.3517 2.2474 2.3046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243583563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:17 Heat of formation + Delta-G solvation = 33.666018 kcal Electronic energy + Delta-G solvation = -21787.613029 eV Core-core repulsion = 18688.307424 eV Total energy + Delta-G solvation = -3099.305605 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07059 -38.91290 -36.61887 -35.74793 -32.56920 -32.22544 -29.94628 -29.11384 -28.84882 -27.52231 -25.22735 -23.09792 -22.02285 -21.28319 -20.84888 -20.27879 -17.86867 -17.55226 -16.51335 -15.50975 -15.24149 -15.11624 -14.83123 -14.55265 -13.98395 -13.92468 -13.70468 -13.32336 -12.84966 -12.40881 -12.30666 -12.19300 -12.06870 -11.71784 -11.68030 -11.37817 -11.15331 -11.02729 -10.77960 -10.75660 -10.45655 -10.06851 -9.74453 -9.38093 -8.87841 -8.43609 -7.91376 -7.31108 -6.95972 -6.42800 -4.08503 1.67923 2.02476 2.21559 2.30432 3.22020 3.28516 3.45471 3.68909 4.24534 4.24992 4.49942 4.82718 5.01875 5.10048 5.12389 5.30066 5.41732 5.45712 5.60621 5.68030 5.77462 5.86113 5.90312 5.99067 5.99551 6.23185 6.29299 6.36786 6.52321 6.61231 6.69729 6.80355 6.95353 7.02181 7.03205 7.19322 7.22176 7.31439 7.59691 7.60842 7.79339 8.02609 8.11292 8.93333 9.56977 10.64520 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.009905 C = 0.006528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.784886 B = 2826.154843 C = 4287.924954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.251 1.251 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.202 6.202 10 C 0.174 3.826 11 C -0.223 4.223 12 C -0.073 4.073 13 C -0.207 4.207 14 C -0.062 4.062 15 C -0.131 4.131 16 C 0.042 3.958 17 C -0.162 4.162 18 C -0.082 4.082 19 C -0.192 4.192 20 C 0.188 3.812 21 C -0.138 4.138 22 C -0.086 4.086 23 C 0.121 3.879 24 N -0.751 5.751 25 H 0.279 0.721 26 H 0.134 0.866 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.246 -0.848 2.468 13.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.106 6.106 10 C 0.121 3.879 11 C -0.242 4.242 12 C -0.091 4.091 13 C -0.226 4.226 14 C -0.080 4.080 15 C -0.132 4.132 16 C 0.041 3.959 17 C -0.182 4.182 18 C -0.101 4.101 19 C -0.215 4.215 20 C 0.086 3.914 21 C -0.142 4.142 22 C -0.123 4.123 23 C -0.003 4.003 24 N -0.384 5.384 25 H 0.089 0.911 26 H 0.151 0.849 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 13.038 -0.476 2.656 13.315 hybrid contribution 0.151 1.087 0.025 1.098 sum 13.190 0.611 2.681 13.473 Atomic orbital electron populations 1.69643 1.05570 1.28440 1.47963 1.24400 0.94904 0.98633 0.95580 0.86315 0.80719 0.81603 0.79297 1.19984 1.21090 1.17468 1.20775 0.77058 0.96522 1.52128 0.87653 1.83610 1.22229 1.25367 1.79441 1.19045 0.90546 0.85644 0.92636 1.21239 1.01109 0.91811 1.10069 1.20852 0.94345 0.96679 0.97241 1.20578 0.93968 0.97282 1.10783 1.20687 0.98523 0.90820 0.97987 1.17876 0.90028 0.92497 1.12817 1.17878 0.93896 0.92550 0.91552 1.20889 1.01126 0.98567 0.97624 1.20560 0.98354 0.94301 0.96857 1.20200 1.06199 1.02400 0.92718 1.18247 0.94469 0.91787 0.86891 1.19783 1.02082 0.96257 0.96121 1.21033 1.02391 0.96958 0.91942 1.21749 0.93191 0.93080 0.92301 1.44638 1.55115 1.26941 1.11708 0.91100 0.84853 0.87264 0.87361 0.86786 0.86272 0.86431 0.87258 0.90401 0.88568 0.92172 0.91993 0.75730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.25 13.96 55.48 0.77 -24.48 16 2 C 0.07 1.91 5.49 -17.52 -0.10 1.81 16 3 Si 0.90 22.02 28.62 -169.99 -4.86 17.16 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.39 -10.75 9.95 30.88 0.31 -10.44 16 8 H 0.11 2.97 5.44 -52.48 -0.29 2.69 16 9 O -0.20 -5.19 6.86 0.40 0.00 -5.19 16 10 C 0.17 3.96 6.55 -38.74 -0.25 3.71 16 11 C -0.22 -4.74 9.16 -39.43 -0.36 -5.10 16 12 C -0.07 -1.30 10.03 -39.55 -0.40 -1.70 16 13 C -0.21 -3.44 10.03 -39.59 -0.40 -3.84 16 14 C -0.06 -1.08 9.73 -39.27 -0.38 -1.46 16 15 C -0.13 -2.63 5.10 -104.73 -0.53 -3.17 16 16 C 0.04 0.82 4.95 -104.94 -0.52 0.30 16 17 C -0.16 -2.84 9.75 -39.22 -0.38 -3.22 16 18 C -0.08 -1.28 10.00 -39.76 -0.40 -1.68 16 19 C -0.19 -3.06 10.07 -39.12 -0.39 -3.45 16 20 C 0.19 3.28 7.03 -83.68 -0.59 2.70 16 21 C -0.14 -2.65 5.78 -103.93 -0.60 -3.25 16 22 C -0.09 -1.53 6.59 -27.24 -0.18 -1.71 16 23 C 0.12 1.78 7.96 -3.63 -0.03 1.75 16 24 N -0.75 -11.12 6.53 -58.13 -0.38 -11.50 16 25 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.13 2.96 5.64 -52.48 -0.30 2.67 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 30 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.10 1.98 7.20 -51.93 -0.37 1.61 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.41 4.77 8.96 -40.82 -0.37 4.41 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -30.20 313.77 -9.20 -39.40 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -4.26 Total: 8.62 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -5.20 Total: -28.75 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.40 Total: -35.98 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.20 -9.20 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243583563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.070 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds