Wall clock time and date at job start Fri Apr 10 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86801 * 120.00486 * 2 1 4 4 H 1.48498 * 109.47265 * 270.00169 * 3 2 1 5 5 H 1.48508 * 109.46759 * 30.00063 * 3 2 1 6 6 H 1.48499 * 109.47175 * 150.00095 * 3 2 1 7 7 C 1.38662 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 180.02562 * 7 2 1 9 9 O 1.34818 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.35682 * 116.99987 * 185.05871 * 9 7 2 11 11 C 1.39017 * 119.94574 * 354.45067 * 10 9 7 12 12 C 1.37807 * 120.05278 * 180.02562 * 11 10 9 13 13 C 1.39470 * 119.94604 * 359.97438 * 12 11 10 14 14 C 1.48260 * 120.05464 * 180.02562 * 13 12 11 15 15 C 1.39388 * 119.72341 * 180.02562 * 14 13 12 16 16 C 1.38301 * 118.89441 * 179.69471 * 15 14 13 17 17 C 1.38917 * 118.69251 * 0.27264 * 16 15 14 18 18 C 1.38254 * 119.51745 * 0.02562 * 17 16 15 19 19 N 1.32200 * 120.39358 * 359.97438 * 18 17 16 20 20 C 1.51500 * 109.58148 * 179.97438 * 18 17 16 21 21 C 1.54329 * 105.20859 * 17.25658 * 20 18 17 22 22 C 1.51256 * 130.56201 * 180.02562 * 17 16 15 23 23 C 1.39475 * 119.89207 * 0.27454 * 13 12 11 24 24 C 1.37812 * 119.94213 * 359.44735 * 23 13 12 25 25 H 0.97000 * 119.99886 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.97281 * 0.02562 * 11 10 9 27 27 H 1.08006 * 120.02683 * 180.02562 * 12 11 10 28 28 H 1.08000 * 120.55474 * 359.96058 * 15 14 13 29 29 H 1.08002 * 120.65381 * 180.30233 * 16 15 14 30 30 H 1.08999 * 110.29532 * 136.18888 * 20 18 17 31 31 H 1.08994 * 110.29661 * 258.22622 * 20 18 17 32 32 H 1.09005 * 110.82169 * 91.82771 * 21 20 18 33 33 H 1.09003 * 110.82052 * 215.17291 * 21 20 18 34 34 H 1.09000 * 110.31281 * 281.75486 * 22 17 16 35 35 H 1.09000 * 110.31187 * 43.92654 * 22 17 16 36 36 H 1.07995 * 120.02363 * 179.70013 * 23 13 12 37 37 H 1.08003 * 119.96782 * 180.24875 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0696 -3.5040 0.1055 11 6 3.4580 -3.4359 0.0915 12 6 4.2066 -4.5880 0.1985 13 6 3.5702 -5.8229 0.3216 14 6 4.3732 -7.0638 0.4375 15 6 3.7300 -8.2943 0.5596 16 6 4.4957 -9.4416 0.6601 17 6 5.8797 -9.3234 0.6413 18 6 6.4550 -8.0717 0.5241 19 7 5.6964 -6.9932 0.4298 20 6 7.9642 -8.2042 0.5280 21 6 8.2410 -9.6905 0.2185 22 6 6.9584 -10.3800 0.7313 23 6 2.1770 -5.8891 0.3302 24 6 1.4328 -4.7336 0.2286 25 1 -0.4850 0.8401 -0.0004 26 1 3.9503 -2.4794 -0.0034 27 1 5.2853 -4.5345 0.1880 28 1 2.6515 -8.3514 0.5711 29 1 4.0269 -10.4103 0.7509 30 1 8.4014 -7.5696 -0.2429 31 1 8.3644 -7.9394 1.5067 32 1 8.3636 -9.8468 -0.8533 33 1 9.1174 -10.0429 0.7625 34 1 7.0880 -10.7014 1.7647 35 1 6.7080 -11.2312 0.0981 36 1 1.6820 -6.8446 0.4205 37 1 0.3540 -4.7840 0.2393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:13 Heat of formation + Delta-G solvation = 24.783670 kcal Electronic energy + Delta-G solvation = -20115.938329 eV Core-core repulsion = 17016.247557 eV Total energy + Delta-G solvation = -3099.690773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57412 -39.00677 -37.05176 -35.64504 -32.59039 -32.41709 -30.51535 -30.23870 -27.97968 -27.32400 -25.44204 -23.49987 -22.48715 -21.32678 -20.86974 -20.39193 -18.04760 -17.20429 -16.47978 -16.17089 -15.65995 -15.04200 -14.57741 -14.36371 -13.84646 -13.75124 -13.51599 -13.44041 -13.04315 -12.98025 -12.69548 -12.62459 -12.13881 -11.74834 -11.72682 -11.52634 -11.38068 -11.16060 -11.01056 -10.82384 -10.66715 -10.48298 -9.61829 -9.44263 -9.05295 -9.02630 -8.57270 -8.24973 -7.04818 -6.55384 -4.11305 0.99800 1.42217 2.22402 2.42319 3.09313 3.10317 3.15303 3.89718 3.93075 3.98675 4.38182 4.64696 4.68378 4.78750 4.92370 4.98091 5.03000 5.17333 5.23121 5.40240 5.48268 5.54983 5.57539 5.64476 5.72613 5.74861 5.92058 5.95828 5.95987 6.12642 6.23800 6.29175 6.42895 6.59578 6.80041 6.89078 7.01651 7.22088 7.33307 7.36651 7.73221 7.90469 8.27967 8.89950 9.57749 10.61791 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035479 B = 0.003202 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.004975 B = 8741.558567 C = 9493.047865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.392 4.392 8 H 0.096 0.904 9 O -0.168 6.168 10 C 0.166 3.834 11 C -0.243 4.243 12 C -0.023 4.023 13 C -0.165 4.165 14 C 0.216 3.784 15 C -0.184 4.184 16 C -0.058 4.058 17 C -0.185 4.185 18 C 0.127 3.873 19 N -0.488 5.488 20 C -0.070 4.070 21 C -0.119 4.119 22 C -0.072 4.072 23 C -0.048 4.048 24 C -0.197 4.197 25 H 0.272 0.728 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.814 -17.050 1.229 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.113 0.887 9 O -0.069 6.069 10 C 0.110 3.890 11 C -0.263 4.263 12 C -0.042 4.042 13 C -0.167 4.167 14 C 0.081 3.919 15 C -0.204 4.204 16 C -0.083 4.083 17 C -0.187 4.187 18 C -0.012 4.012 19 N -0.197 5.197 20 C -0.108 4.108 21 C -0.156 4.156 22 C -0.110 4.110 23 C -0.068 4.068 24 C -0.216 4.216 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.139 0.861 28 H 0.154 0.846 29 H 0.145 0.855 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.752 -15.987 1.137 19.874 hybrid contribution -0.069 0.008 0.087 0.111 sum 11.683 -15.979 1.223 19.832 Atomic orbital electron populations 1.70034 1.06066 1.28012 1.44934 1.25352 0.95881 0.99029 0.96219 0.85672 0.79006 0.79720 0.78861 1.19723 1.20138 1.18996 1.21437 0.92052 0.80653 1.52606 0.88676 1.83943 1.34747 1.11677 1.76570 1.19534 0.90350 0.87920 0.91206 1.21149 0.93612 0.99097 1.12402 1.20892 0.99283 0.90848 0.93154 1.17943 0.91918 0.90806 1.16060 1.19702 0.88090 0.92502 0.91621 1.21977 1.01180 0.92596 1.04665 1.20900 0.92254 0.98629 0.96540 1.21322 0.94443 0.97223 1.05681 1.21753 0.96309 0.88380 0.94726 1.66836 1.05828 1.32528 1.14520 1.20965 0.89529 0.97176 1.03140 1.22298 0.97472 0.94175 1.01699 1.20864 0.92210 0.96329 1.01582 1.20666 0.92182 0.97033 0.96874 1.20096 0.99650 0.90018 1.11880 0.91781 0.85203 0.86143 0.84580 0.85527 0.89922 0.89560 0.90828 0.90236 0.90455 0.90926 0.86565 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.39 -10.78 9.48 30.89 0.29 -10.49 16 8 H 0.10 2.43 5.19 -52.49 -0.27 2.15 16 9 O -0.17 -4.71 9.75 0.29 0.00 -4.71 16 10 C 0.17 3.98 6.65 -39.01 -0.26 3.72 16 11 C -0.24 -5.40 9.15 -39.45 -0.36 -5.76 16 12 C -0.02 -0.46 9.56 -39.28 -0.38 -0.83 16 13 C -0.17 -3.14 5.88 -104.86 -0.62 -3.75 16 14 C 0.22 3.73 6.73 -83.02 -0.56 3.17 16 15 C -0.18 -2.64 9.46 -39.13 -0.37 -3.01 16 16 C -0.06 -0.72 10.16 -39.31 -0.40 -1.11 16 17 C -0.18 -2.29 6.16 -104.09 -0.64 -2.93 16 18 C 0.13 1.81 7.31 -82.03 -0.60 1.21 16 19 N -0.49 -8.42 9.41 -5.75 -0.05 -8.47 16 20 C -0.07 -0.72 6.77 -26.79 -0.18 -0.90 16 21 C -0.12 -0.91 7.08 -25.31 -0.18 -1.09 16 22 C -0.07 -0.62 6.77 -26.89 -0.18 -0.80 16 23 C -0.05 -0.88 9.41 -39.28 -0.37 -1.25 16 24 C -0.20 -4.12 9.98 -39.45 -0.39 -4.51 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.13 2.85 5.62 -52.49 -0.30 2.56 16 27 H 0.12 2.28 7.53 -52.48 -0.40 1.89 16 28 H 0.14 1.67 6.19 -52.49 -0.32 1.34 16 29 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.12 1.70 6.18 -52.49 -0.32 1.37 16 37 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 313.74 15.07 4.73 4.73 Total: -1.00 -31.19 313.74 -9.01 -40.19 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.13 Total: 4.32 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -5.29 Total: -27.33 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.70 Total: -32.37 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: 0.00 Total: -4.71 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.19 -9.01 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.977 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds