Wall clock time and date at job start Fri Apr 10 2020 14:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86801 * 120.00486 * 2 1 4 4 H 1.48498 * 109.47265 * 270.00169 * 3 2 1 5 5 H 1.48508 * 109.46759 * 30.00063 * 3 2 1 6 6 H 1.48499 * 109.47175 * 150.00095 * 3 2 1 7 7 C 1.38662 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00166 * 180.02562 * 7 2 1 9 9 O 1.34818 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.35682 * 116.99987 * 185.05871 * 9 7 2 11 11 C 1.39017 * 119.94574 * 354.45067 * 10 9 7 12 12 C 1.37807 * 120.05278 * 180.02562 * 11 10 9 13 13 C 1.39470 * 119.94604 * 359.97438 * 12 11 10 14 14 C 1.48260 * 120.05464 * 180.02562 * 13 12 11 15 15 C 1.39388 * 119.72341 * 180.02562 * 14 13 12 16 16 C 1.38301 * 118.89441 * 179.69471 * 15 14 13 17 17 C 1.38917 * 118.69251 * 0.27264 * 16 15 14 18 18 C 1.38254 * 119.51745 * 0.02562 * 17 16 15 19 19 N 1.32200 * 120.39358 * 359.97438 * 18 17 16 20 20 C 1.51500 * 109.58148 * 179.97438 * 18 17 16 21 21 C 1.54329 * 105.20859 * 17.25658 * 20 18 17 22 22 C 1.51256 * 130.56201 * 180.02562 * 17 16 15 23 23 C 1.39475 * 119.89207 * 0.27454 * 13 12 11 24 24 C 1.37812 * 119.94213 * 359.44735 * 23 13 12 25 25 H 0.97000 * 119.99886 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.97281 * 0.02562 * 11 10 9 27 27 H 1.08006 * 120.02683 * 180.02562 * 12 11 10 28 28 H 1.08000 * 120.55474 * 359.96058 * 15 14 13 29 29 H 1.08002 * 120.65381 * 180.30233 * 16 15 14 30 30 H 1.08999 * 110.29532 * 136.18888 * 20 18 17 31 31 H 1.08994 * 110.29661 * 258.22622 * 20 18 17 32 32 H 1.09005 * 110.82169 * 91.82771 * 21 20 18 33 33 H 1.09003 * 110.82052 * 215.17291 * 21 20 18 34 34 H 1.09000 * 110.31281 * 281.75486 * 22 17 16 35 35 H 1.09000 * 110.31187 * 43.92654 * 22 17 16 36 36 H 1.07995 * 120.02363 * 179.70013 * 23 13 12 37 37 H 1.08003 * 119.96782 * 180.24875 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3347 -2.3684 -0.0005 10 6 2.0696 -3.5040 0.1055 11 6 3.4580 -3.4359 0.0915 12 6 4.2066 -4.5880 0.1985 13 6 3.5702 -5.8229 0.3216 14 6 4.3732 -7.0638 0.4375 15 6 3.7300 -8.2943 0.5596 16 6 4.4957 -9.4416 0.6601 17 6 5.8797 -9.3234 0.6413 18 6 6.4550 -8.0717 0.5241 19 7 5.6964 -6.9932 0.4298 20 6 7.9642 -8.2042 0.5280 21 6 8.2410 -9.6905 0.2185 22 6 6.9584 -10.3800 0.7313 23 6 2.1770 -5.8891 0.3302 24 6 1.4328 -4.7336 0.2286 25 1 -0.4850 0.8401 -0.0004 26 1 3.9503 -2.4794 -0.0034 27 1 5.2853 -4.5345 0.1880 28 1 2.6515 -8.3514 0.5711 29 1 4.0269 -10.4103 0.7509 30 1 8.4014 -7.5696 -0.2429 31 1 8.3644 -7.9394 1.5067 32 1 8.3636 -9.8468 -0.8533 33 1 9.1174 -10.0429 0.7625 34 1 7.0880 -10.7014 1.7647 35 1 6.7080 -11.2312 0.0981 36 1 1.6820 -6.8446 0.4205 37 1 0.3540 -4.7840 0.2393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587458.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:13 Heat of formation + Delta-G solvation = 7.265266 kcal Electronic energy + Delta-G solvation = -20116.697984 eV Core-core repulsion = 17016.247557 eV Total energy + Delta-G solvation = -3100.450428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66907 -40.70793 -38.53491 -36.82922 -34.36085 -33.65056 -31.94357 -31.81698 -28.98261 -28.49843 -27.32019 -24.70344 -23.94430 -22.69482 -21.84884 -21.64413 -19.85568 -18.96285 -17.62201 -17.43559 -16.57578 -16.37250 -16.15256 -16.00051 -15.61210 -15.18294 -14.77025 -14.57632 -14.56092 -14.18611 -13.76266 -13.74976 -13.57539 -13.26459 -13.08788 -12.70266 -12.56600 -12.48912 -12.27789 -12.13790 -12.04991 -11.78690 -11.26357 -10.87998 -10.65707 -10.18387 -9.90423 -9.89170 -8.64695 -8.51841 -6.18870 -0.25003 0.36351 0.55097 0.94204 1.34419 1.43805 1.51892 2.15262 2.62852 2.94459 2.97021 3.23878 3.40665 3.58035 3.68126 3.95168 4.05572 4.12200 4.14112 4.20022 4.31585 4.39181 4.47853 4.63946 4.71141 4.84678 4.90725 4.93405 4.97918 5.03850 5.08623 5.12608 5.19741 5.27732 5.32727 5.37352 5.49485 5.62594 5.70130 5.86072 5.97350 6.07620 6.92379 7.12513 7.69016 8.70434 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035479 B = 0.003202 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.004975 B = 8741.558567 C = 9493.047865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.418 4.418 8 H 0.102 0.898 9 O -0.220 6.220 10 C 0.129 3.871 11 C -0.248 4.248 12 C -0.035 4.035 13 C -0.144 4.144 14 C 0.173 3.827 15 C -0.179 4.179 16 C -0.061 4.061 17 C -0.170 4.170 18 C 0.097 3.903 19 N -0.517 5.517 20 C -0.073 4.073 21 C -0.110 4.110 22 C -0.071 4.071 23 C -0.040 4.040 24 C -0.200 4.200 25 H 0.275 0.725 26 H 0.122 0.878 27 H 0.128 0.872 28 H 0.158 0.842 29 H 0.166 0.834 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.162 0.838 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.197 -21.031 1.672 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.494 4.494 8 H 0.119 0.881 9 O -0.125 6.125 10 C 0.077 3.923 11 C -0.267 4.267 12 C -0.053 4.053 13 C -0.145 4.145 14 C 0.038 3.962 15 C -0.198 4.198 16 C -0.086 4.086 17 C -0.172 4.172 18 C -0.042 4.042 19 N -0.227 5.227 20 C -0.111 4.111 21 C -0.148 4.148 22 C -0.109 4.109 23 C -0.058 4.058 24 C -0.219 4.219 25 H 0.084 0.916 26 H 0.140 0.860 27 H 0.146 0.854 28 H 0.175 0.825 29 H 0.183 0.817 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.179 0.821 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.175 -20.030 1.580 24.589 hybrid contribution -0.531 0.660 -0.006 0.847 sum 13.644 -19.371 1.574 23.746 Atomic orbital electron populations 1.70164 1.07975 1.29060 1.48012 1.26589 0.96860 1.02680 0.95509 0.84595 0.77813 0.74509 0.79365 1.18672 1.19297 1.17840 1.21859 0.92611 0.81370 1.53515 0.88115 1.83921 1.35913 1.12581 1.80123 1.20044 0.91236 0.88175 0.92814 1.21185 0.93283 0.99664 1.12543 1.21007 0.99639 0.90884 0.93813 1.18376 0.92729 0.91445 1.11964 1.19594 0.88530 0.92627 0.95448 1.22237 1.02469 0.91992 1.03128 1.21363 0.92336 0.99595 0.95305 1.21944 0.95461 0.97753 1.02076 1.22478 0.98151 0.88532 0.95056 1.66711 1.06269 1.34703 1.14970 1.21141 0.87096 0.99340 1.03531 1.22339 0.98181 0.91733 1.02498 1.21022 0.90897 0.95730 1.03215 1.21059 0.91829 0.97835 0.95097 1.20402 1.00439 0.89831 1.11277 0.91583 0.86009 0.85385 0.82489 0.81672 0.90306 0.88834 0.90335 0.87534 0.88648 0.88821 0.82099 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.85 13.67 21.61 0.30 -55.55 16 2 C -0.02 -1.02 5.49 84.84 0.47 -0.55 16 3 Si 1.02 43.03 29.55 68.60 2.03 45.06 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.42 -24.54 9.48 67.92 0.64 -23.89 16 8 H 0.10 5.50 5.19 -2.91 -0.02 5.48 16 9 O -0.22 -13.28 9.75 -21.87 -0.21 -13.49 16 10 C 0.13 6.56 6.65 22.64 0.15 6.72 16 11 C -0.25 -11.57 9.15 22.35 0.20 -11.36 16 12 C -0.03 -1.42 9.56 22.46 0.21 -1.21 16 13 C -0.14 -5.34 5.88 -20.02 -0.12 -5.46 16 14 C 0.17 5.67 6.73 41.99 0.28 5.96 16 15 C -0.18 -4.47 9.46 22.56 0.21 -4.26 16 16 C -0.06 -1.22 10.16 22.45 0.23 -0.99 16 17 C -0.17 -3.51 6.16 -19.52 -0.12 -3.63 16 18 C 0.10 2.51 7.31 42.76 0.31 2.82 16 19 N -0.52 -17.19 9.41 -172.10 -1.62 -18.81 16 20 C -0.07 -1.31 6.77 30.55 0.21 -1.10 16 21 C -0.11 -1.19 7.08 31.51 0.22 -0.96 16 22 C -0.07 -0.85 6.77 30.49 0.21 -0.64 16 23 C -0.04 -1.38 9.41 22.47 0.21 -1.17 16 24 C -0.20 -8.53 9.98 22.36 0.22 -8.31 16 25 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 26 H 0.12 5.75 5.62 -2.91 -0.02 5.73 16 27 H 0.13 4.98 7.53 -2.91 -0.02 4.96 16 28 H 0.16 3.12 6.19 -2.91 -0.02 3.10 16 29 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 30 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.16 4.12 6.18 -2.91 -0.02 4.10 16 37 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -74.24 313.74 5.14 -69.10 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 1.10 Total: 21.73 kcal Atomic # 6 Polarization: -51.60 SS G_CDS: 3.55 Total: -48.05 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -1.32 Total: -74.36 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.21 Total: -13.49 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -74.24 5.14 -69.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587458.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.367 kcal (2) G-P(sol) polarization free energy of solvation -74.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds