Wall clock time and date at job start Fri Apr 10 2020 14:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86793 * 120.00366 * 2 1 4 4 H 1.48497 * 109.47508 * 240.00163 * 3 2 1 5 5 H 1.48505 * 109.47209 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47201 * 119.99924 * 3 2 1 7 7 C 1.38660 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99680 * 180.02562 * 7 2 1 9 9 O 1.34811 * 120.00217 * 359.97438 * 7 2 1 10 10 C 1.35674 * 117.00161 * 185.06179 * 9 7 2 11 11 C 1.39016 * 119.94544 * 354.44921 * 10 9 7 12 12 C 1.37815 * 120.05685 * 180.02562 * 11 10 9 13 13 C 1.39478 * 119.94456 * 359.97438 * 12 11 10 14 14 C 1.48248 * 120.05413 * 180.02562 * 13 12 11 15 15 C 1.39395 * 119.73061 * 180.02562 * 14 13 12 16 16 C 1.38369 * 119.06404 * 180.02562 * 15 14 13 17 17 C 1.38808 * 118.51840 * 359.97438 * 16 15 14 18 18 C 1.50701 * 120.31731 * 179.97438 * 17 16 15 19 19 C 1.52999 * 117.50497 * 188.62306 * 18 17 16 20 20 C 1.52993 * 117.50184 * 119.99437 * 18 17 16 21 21 C 1.38240 * 119.37772 * 0.25133 * 17 16 15 22 22 N 1.31771 * 120.89394 * 359.48143 * 21 17 16 23 23 C 1.39476 * 119.88712 * 0.27543 * 13 12 11 24 24 C 1.37803 * 119.94512 * 359.42685 * 23 13 12 25 25 H 0.97005 * 119.99838 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.97689 * 359.97438 * 11 10 9 27 27 H 1.07994 * 120.03138 * 180.02562 * 12 11 10 28 28 H 1.07994 * 120.47243 * 359.97438 * 15 14 13 29 29 H 1.07999 * 120.74630 * 179.97438 * 16 15 14 30 30 H 1.09001 * 115.55753 * 334.31266 * 18 17 16 31 31 H 1.09003 * 117.49387 * 359.97438 * 19 18 17 32 32 H 1.09001 * 117.49970 * 145.01582 * 19 18 17 33 33 H 1.09001 * 117.50423 * 214.97940 * 20 18 17 34 34 H 1.09000 * 117.50123 * 0.02562 * 20 18 17 35 35 H 1.07999 * 119.55363 * 179.72254 * 21 17 16 36 36 H 1.07999 * 120.02093 * 179.69925 * 23 13 12 37 37 H 1.08005 * 119.97341 * 180.27421 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3684 -0.0005 10 6 2.0694 -3.5039 0.1056 11 6 3.4579 -3.4359 0.0916 12 6 4.2065 -4.5880 0.1987 13 6 3.5701 -5.8230 0.3218 14 6 4.3730 -7.0637 0.4377 15 6 3.7299 -8.2944 0.5599 16 6 4.4929 -9.4437 0.6677 17 6 5.8758 -9.3253 0.6494 18 6 6.7458 -10.5505 0.7646 19 6 8.2502 -10.3347 0.9407 20 6 7.7018 -10.8494 -0.3918 21 6 6.4476 -8.0724 0.5302 22 7 5.6980 -6.9939 0.4239 23 6 2.1769 -5.8890 0.3303 24 6 1.4328 -4.7336 0.2291 25 1 -0.4850 0.8401 -0.0004 26 1 3.9503 -2.4795 -0.0042 27 1 5.2851 -4.5346 0.1882 28 1 2.6515 -8.3501 0.5710 29 1 4.0230 -10.4114 0.7640 30 1 6.2957 -11.4002 1.2780 31 1 8.6108 -9.3065 0.9727 32 1 8.7899 -11.0424 1.5699 33 1 7.8810 -11.8957 -0.6392 34 1 7.7019 -10.1597 -1.2358 35 1 7.5233 -7.9766 0.5202 36 1 1.6818 -6.8446 0.4206 37 1 0.3540 -4.7838 0.2401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:19 Heat of formation + Delta-G solvation = 55.235709 kcal Electronic energy + Delta-G solvation = -19872.266602 eV Core-core repulsion = 16773.896329 eV Total energy + Delta-G solvation = -3098.370273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33649 -38.98102 -37.45252 -36.25811 -32.52632 -32.37801 -31.38509 -30.22710 -28.08471 -25.59595 -24.29595 -23.60491 -22.57498 -21.77482 -21.04796 -20.38087 -18.07093 -17.51726 -16.73024 -16.33985 -15.52806 -15.00504 -14.70970 -14.32959 -14.29201 -13.96568 -13.79885 -13.60311 -13.08713 -12.82750 -12.71770 -12.37699 -11.86839 -11.75420 -11.70682 -11.59454 -11.15947 -11.03517 -10.82791 -10.72537 -10.59324 -10.49814 -9.63341 -9.47704 -9.16527 -9.10023 -8.63191 -8.25974 -7.05993 -6.56070 -4.11941 0.93466 1.41400 2.21506 2.38687 3.09382 3.10526 3.13169 3.56459 3.89485 4.04326 4.27287 4.53322 4.62099 4.63857 4.75344 4.86609 4.91280 5.01802 5.04825 5.15706 5.32572 5.36517 5.52822 5.60845 5.70541 5.73470 5.80271 5.85479 5.92423 6.11271 6.20436 6.30141 6.40757 6.58324 6.76716 6.87784 7.00071 7.20480 7.31857 7.35707 7.72314 7.89569 8.22666 8.89041 9.56705 10.60928 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.040915 B = 0.002940 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.182146 B = 9522.076866 C =10123.962836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.392 4.392 8 H 0.096 0.904 9 O -0.167 6.167 10 C 0.166 3.834 11 C -0.244 4.244 12 C -0.023 4.023 13 C -0.167 4.167 14 C 0.206 3.794 15 C -0.180 4.180 16 C -0.063 4.063 17 C -0.138 4.138 18 C -0.106 4.106 19 C -0.179 4.179 20 C -0.172 4.172 21 C 0.109 3.891 22 N -0.488 5.488 23 C -0.048 4.048 24 C -0.197 4.197 25 H 0.273 0.727 26 H 0.130 0.870 27 H 0.121 0.879 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.116 0.884 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.068 -17.580 1.136 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.113 0.887 9 O -0.068 6.068 10 C 0.110 3.890 11 C -0.263 4.263 12 C -0.042 4.042 13 C -0.169 4.169 14 C 0.072 3.928 15 C -0.200 4.200 16 C -0.088 4.088 17 C -0.141 4.141 18 C -0.125 4.125 19 C -0.215 4.215 20 C -0.209 4.209 21 C -0.050 4.050 22 N -0.197 5.197 23 C -0.068 4.068 24 C -0.217 4.217 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.139 0.861 28 H 0.153 0.847 29 H 0.147 0.853 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.166 0.834 36 H 0.134 0.866 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.002 -16.507 1.025 19.864 hybrid contribution 0.085 -0.101 0.096 0.163 sum 11.087 -16.608 1.120 20.000 Atomic orbital electron populations 1.70027 1.06065 1.28144 1.44754 1.25354 0.95888 0.99039 0.96194 0.85736 0.78736 0.79381 0.79386 1.19324 1.20167 1.19310 1.21391 0.92032 0.80656 1.52706 0.88712 1.83937 1.34760 1.11679 1.76471 1.19536 0.90358 0.87917 0.91211 1.21150 0.93611 0.99108 1.12422 1.20895 0.99280 0.90848 0.93133 1.17951 0.91957 0.90868 1.16133 1.19902 0.88946 0.92490 0.91481 1.22050 1.01323 0.92600 1.03992 1.21224 0.92815 0.98594 0.96216 1.19982 0.94035 0.94709 1.05335 1.20851 0.90728 0.97333 1.03589 1.23064 0.95397 1.02829 1.00241 1.23043 1.03257 1.02186 0.92417 1.22528 0.99737 0.87352 0.95368 1.67723 1.06164 1.31984 1.13844 1.20671 0.92233 0.97018 0.96831 1.20098 0.99658 0.90028 1.11878 0.91713 0.85200 0.86120 0.84703 0.85306 0.87111 0.88286 0.88424 0.88530 0.88573 0.83414 0.86578 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.10 29.55 -169.99 -5.02 15.07 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 7 C -0.39 -10.74 9.48 30.89 0.29 -10.45 16 8 H 0.10 2.40 5.19 -52.48 -0.27 2.13 16 9 O -0.17 -4.67 9.75 0.34 0.00 -4.66 16 10 C 0.17 3.96 6.65 -39.00 -0.26 3.70 16 11 C -0.24 -5.36 9.15 -39.45 -0.36 -5.72 16 12 C -0.02 -0.45 9.57 -39.27 -0.38 -0.82 16 13 C -0.17 -3.12 5.88 -104.86 -0.62 -3.73 16 14 C 0.21 3.45 6.73 -82.95 -0.56 2.89 16 15 C -0.18 -2.48 9.46 -39.10 -0.37 -2.85 16 16 C -0.06 -0.74 9.88 -39.32 -0.39 -1.13 16 17 C -0.14 -1.62 5.63 -104.41 -0.59 -2.21 16 18 C -0.11 -0.94 6.06 -91.77 -0.56 -1.49 16 19 C -0.18 -1.34 9.87 -26.73 -0.26 -1.61 16 20 C -0.17 -1.32 10.17 -26.73 -0.27 -1.59 16 21 C 0.11 1.45 10.47 -17.58 -0.18 1.26 16 22 N -0.49 -8.05 9.43 -9.79 -0.09 -8.15 16 23 C -0.05 -0.87 9.41 -39.28 -0.37 -1.24 16 24 C -0.20 -4.09 9.98 -39.45 -0.39 -4.48 16 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.13 2.83 5.62 -52.49 -0.30 2.53 16 27 H 0.12 2.24 7.53 -52.49 -0.40 1.84 16 28 H 0.14 1.60 6.19 -52.49 -0.32 1.28 16 29 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.75 6.19 -51.93 -0.32 0.42 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.15 1.62 6.02 -52.49 -0.32 1.30 16 36 H 0.12 1.67 6.17 -52.49 -0.32 1.35 16 37 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 317.48 15.07 4.78 4.78 Total: -1.00 -30.49 317.48 -8.85 -39.34 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.92 Total: 5.87 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -5.36 Total: -28.46 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.67 Total: -31.93 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: 0.00 Total: -4.66 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.49 -8.85 -39.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.572 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds