Wall clock time and date at job start Fri Apr 10 2020 14:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86797 * 120.00094 * 2 1 4 4 H 1.48505 * 109.47021 * 239.99422 * 3 2 1 5 5 H 1.48492 * 109.47232 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47234 * 119.99711 * 3 2 1 7 7 C 1.38639 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00108 * 180.02562 * 7 2 1 9 9 O 1.34815 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.35674 * 116.99748 * 185.06620 * 9 7 2 11 11 C 1.38732 * 120.13900 * 354.40121 * 10 9 7 12 12 C 1.38126 * 120.05550 * 180.02562 * 11 10 9 13 13 C 1.38451 * 120.33099 * 359.97438 * 12 11 10 14 14 C 1.38015 * 120.27062 * 359.97438 * 13 12 11 15 15 C 1.39326 * 119.94064 * 0.02562 * 14 13 12 16 16 C 1.48200 * 120.15972 * 179.97438 * 15 14 13 17 17 C 1.39162 * 120.03470 * 64.72873 * 16 15 14 18 18 C 1.38001 * 120.12264 * 179.84685 * 17 16 15 19 19 C 1.38447 * 120.02815 * 0.37877 * 18 17 16 20 20 C 1.37964 * 120.35484 * 359.71835 * 19 18 17 21 21 C 1.38831 * 120.56397 * 0.23001 * 20 19 18 22 22 N 1.39827 * 111.04820 * 179.48411 * 21 20 19 23 23 C 1.47912 * 107.90890 * 18.28257 * 22 21 20 24 24 C 1.51599 * 131.50745 * 180.40320 * 20 19 18 25 25 H 0.97001 * 119.99959 * 0.02562 * 1 2 3 26 26 H 1.07996 * 119.97570 * 0.02562 * 11 10 9 27 27 H 1.08001 * 119.83926 * 180.02562 * 12 11 10 28 28 H 1.07995 * 119.86752 * 179.97438 * 13 12 11 29 29 H 1.08001 * 120.03020 * 179.74405 * 14 13 12 30 30 H 1.08003 * 119.93924 * 0.08967 * 17 16 15 31 31 H 1.08004 * 119.98413 * 180.13552 * 18 17 16 32 32 H 1.08006 * 119.82399 * 179.69559 * 19 18 17 33 33 H 1.00902 * 111.00162 * 256.44891 * 22 21 20 34 34 H 1.09001 * 110.78704 * 91.05866 * 23 22 21 35 35 H 1.08997 * 110.78317 * 214.32419 * 23 22 21 36 36 H 1.08996 * 110.74659 * 45.48521 * 24 20 19 37 37 H 1.09002 * 110.74549 * 282.13573 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2847 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0695 -3.5037 0.1078 11 6 3.4553 -3.4404 0.0944 12 6 4.2017 -4.5975 0.2032 13 6 3.5741 -5.8254 0.3267 14 6 2.1962 -5.9039 0.3426 15 6 1.4323 -4.7439 0.2336 16 6 -0.0475 -4.8227 0.2496 17 6 -0.7092 -5.2650 1.3911 18 6 -2.0873 -5.3361 1.4091 19 6 -2.8143 -4.9746 0.2877 20 6 -2.1690 -4.5365 -0.8503 21 6 -0.7835 -4.4563 -0.8896 22 7 -0.3420 -4.0017 -2.1360 23 6 -1.4849 -3.3527 -2.8145 24 6 -2.7013 -4.0776 -2.1935 25 1 -0.4850 0.8401 -0.0004 26 1 3.9510 -2.4857 -0.0012 27 1 5.2804 -4.5442 0.1928 28 1 4.1650 -6.7254 0.4108 29 1 1.7107 -6.8642 0.4349 30 1 -0.1434 -5.5494 2.2660 31 1 -2.5986 -5.6776 2.2970 32 1 -3.8925 -5.0362 0.3037 33 1 0.0229 -4.7622 -2.6898 34 1 -1.5138 -2.2866 -2.5894 35 1 -1.4405 -3.5182 -3.8909 36 1 -3.5360 -3.3889 -2.0632 37 1 -2.9952 -4.9312 -2.8044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243587522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:22 Heat of formation + Delta-G solvation = 19.373532 kcal Electronic energy + Delta-G solvation = -21675.053015 eV Core-core repulsion = 18575.127641 eV Total energy + Delta-G solvation = -3099.925374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44194 -40.36163 -38.03673 -37.08547 -34.24231 -33.67765 -31.07006 -30.46634 -29.79730 -28.81650 -27.22375 -24.37499 -23.18833 -23.02912 -22.07536 -21.33880 -19.69686 -18.75406 -17.95327 -16.81325 -16.62089 -16.29704 -16.22907 -15.97122 -15.48732 -15.27792 -15.07348 -14.68947 -14.36049 -14.10735 -13.78306 -13.52289 -13.45469 -13.13295 -12.88842 -12.62534 -12.48164 -12.39544 -12.28021 -12.13943 -12.06825 -11.77883 -11.06536 -10.73484 -10.51522 -9.82328 -9.35964 -8.84661 -8.55800 -8.37760 -6.02369 0.31019 0.53951 0.77374 0.89511 1.33315 1.44050 1.47912 2.19782 2.81759 2.93731 3.03487 3.27112 3.62703 3.73592 3.86877 4.04314 4.16173 4.24337 4.29891 4.31995 4.49458 4.60300 4.63039 4.71203 4.74290 4.81508 4.99336 5.06906 5.14214 5.19084 5.23599 5.29846 5.53980 5.60883 5.65924 5.75459 5.79242 5.83384 5.95116 6.09456 6.28410 6.33801 6.52023 7.05990 7.93545 8.83273 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.008040 C = 0.005835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.283935 B = 3481.687554 C = 4797.527539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.015 4.015 3 Si 1.008 2.992 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.412 4.412 8 H 0.092 0.908 9 O -0.194 6.194 10 C 0.140 3.860 11 C -0.259 4.259 12 C -0.071 4.071 13 C -0.197 4.197 14 C -0.065 4.065 15 C -0.133 4.133 16 C -0.044 4.044 17 C -0.109 4.109 18 C -0.140 4.140 19 C -0.100 4.100 20 C -0.169 4.169 21 C 0.104 3.896 22 N -0.639 5.639 23 C 0.058 3.942 24 C -0.095 4.095 25 H 0.267 0.733 26 H 0.113 0.887 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.353 0.647 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.963 -11.181 -2.084 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.213 4.213 3 Si 0.828 3.172 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.109 0.891 9 O -0.098 6.098 10 C 0.088 3.912 11 C -0.278 4.278 12 C -0.089 4.089 13 C -0.215 4.215 14 C -0.083 4.083 15 C -0.135 4.135 16 C -0.046 4.046 17 C -0.128 4.128 18 C -0.159 4.159 19 C -0.118 4.118 20 C -0.173 4.173 21 C 0.005 3.995 22 N -0.267 5.267 23 C -0.070 4.070 24 C -0.133 4.133 25 H 0.076 0.924 26 H 0.131 0.869 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.179 0.821 34 H 0.068 0.932 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.022 -10.380 -1.977 10.758 hybrid contribution 0.060 0.672 -0.191 0.701 sum -1.962 -9.708 -2.167 10.139 Atomic orbital electron populations 1.70224 1.07634 1.28044 1.48510 1.26342 0.96682 1.02070 0.96229 0.84810 0.77518 0.75269 0.79616 1.18550 1.19734 1.18566 1.21690 0.92124 0.82181 1.52874 0.89082 1.84027 1.34549 1.11552 1.79717 1.19850 0.90836 0.87823 0.92667 1.21245 0.93348 1.00055 1.13135 1.21165 1.00029 0.91595 0.96130 1.21017 0.94073 0.97920 1.08507 1.21105 0.93977 0.96062 0.97111 1.18115 0.92096 0.91068 1.12191 1.18299 0.91875 1.01887 0.92576 1.21192 0.95281 0.99948 0.96366 1.21208 0.93181 1.02284 0.99187 1.20677 1.00598 0.98944 0.91576 1.21360 0.94331 1.03566 0.98002 1.19637 0.92719 0.95265 0.91832 1.57887 1.34378 1.31814 1.02573 1.22939 0.86878 0.98189 0.98986 1.21647 0.98696 1.00855 0.92094 0.92425 0.86871 0.84188 0.83349 0.84225 0.85117 0.82933 0.83854 0.82148 0.93153 0.87168 0.89388 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.35 13.67 21.61 0.30 -56.06 16 2 C -0.01 -0.86 5.49 84.83 0.47 -0.39 16 3 Si 1.01 44.36 29.55 68.60 2.03 46.38 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.41 -24.59 9.49 67.92 0.64 -23.95 16 8 H 0.09 5.09 5.21 -2.91 -0.02 5.07 16 9 O -0.19 -11.74 8.97 -21.76 -0.20 -11.93 16 10 C 0.14 7.19 6.62 22.82 0.15 7.34 16 11 C -0.26 -11.80 9.16 22.36 0.20 -11.59 16 12 C -0.07 -2.55 10.03 22.29 0.22 -2.32 16 13 C -0.20 -6.30 10.03 22.27 0.22 -6.08 16 14 C -0.06 -2.28 9.73 22.48 0.22 -2.06 16 15 C -0.13 -5.87 5.27 -19.94 -0.11 -5.98 16 16 C -0.04 -1.89 4.97 -19.86 -0.10 -1.99 16 17 C -0.11 -4.03 9.70 22.44 0.22 -3.81 16 18 C -0.14 -4.42 10.04 22.26 0.22 -4.19 16 19 C -0.10 -3.17 10.02 22.25 0.22 -2.95 16 20 C -0.17 -6.12 6.23 -19.50 -0.12 -6.25 16 21 C 0.10 4.36 6.21 38.56 0.24 4.60 16 22 N -0.64 -25.91 7.11 -332.20 -2.36 -28.27 16 23 C 0.06 1.99 7.81 86.66 0.68 2.67 16 24 C -0.10 -2.79 7.04 30.68 0.22 -2.58 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 27 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 28 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 30 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 31 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.35 12.30 8.85 -89.69 -0.79 11.51 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -75.20 317.39 3.67 -71.53 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: 0.31 Total: 37.87 kcal Atomic # 6 Polarization: -63.13 SS G_CDS: 3.60 Total: -59.52 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -2.07 Total: -84.33 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.20 Total: -11.93 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -75.20 3.67 -71.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.903 kcal (2) G-P(sol) polarization free energy of solvation -75.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds