Wall clock time and date at job start Fri Apr 10 2020 14:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86793 * 120.00007 * 2 1 4 4 H 1.48503 * 109.47082 * 269.99604 * 3 2 1 5 5 H 1.48502 * 109.47549 * 29.99630 * 3 2 1 6 6 H 1.48499 * 109.47236 * 149.99689 * 3 2 1 7 7 C 1.38650 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99840 * 0.02562 * 7 2 1 9 9 O 1.34808 * 120.00224 * 179.97438 * 7 2 1 10 10 C 1.35669 * 117.00296 * 185.10213 * 9 7 2 11 11 C 1.38752 * 120.13164 * 354.41074 * 10 9 7 12 12 C 1.38116 * 120.04344 * 179.97438 * 11 10 9 13 13 C 1.38441 * 120.32633 * 359.97438 * 12 11 10 14 14 C 1.38006 * 120.27344 * 359.95818 * 13 12 11 15 15 C 1.39289 * 119.94311 * 0.06185 * 14 13 12 16 16 C 1.48290 * 120.15832 * 180.23323 * 15 14 13 17 17 C 1.39430 * 120.11375 * 64.72470 * 16 15 14 18 18 C 1.37981 * 119.85343 * 180.02562 * 17 16 15 19 19 C 1.38349 * 120.14746 * 0.02562 * 18 17 16 20 20 C 1.38274 * 120.29887 * 359.97438 * 19 18 17 21 21 C 1.38250 * 120.03742 * 359.76062 * 20 19 18 22 22 C 1.51164 * 108.31292 * 179.84035 * 21 20 19 23 23 N 1.48053 * 105.72045 * 342.86787 * 22 21 20 24 24 C 1.48055 * 103.85720 * 27.36662 * 23 22 21 25 25 H 0.97001 * 119.99894 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.97768 * 359.97438 * 11 10 9 27 27 H 1.08006 * 119.83102 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.86054 * 180.02562 * 13 12 11 29 29 H 1.08004 * 120.03182 * 180.02562 * 14 13 12 30 30 H 1.07999 * 120.07130 * 359.97438 * 17 16 15 31 31 H 1.07999 * 119.92585 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.85035 * 179.97438 * 19 18 17 33 33 H 1.09001 * 110.34992 * 223.71828 * 22 21 20 34 34 H 1.08993 * 110.08245 * 101.88789 * 22 21 20 35 35 H 1.00902 * 111.00510 * 268.02388 * 23 22 21 36 36 H 1.08999 * 110.21078 * 213.37525 * 24 23 22 37 37 H 1.09005 * 110.20866 * 91.47182 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3569 -1.2008 0.0000 10 6 3.9729 -2.4049 -0.1069 11 6 3.2249 -3.5735 -0.0928 12 6 3.8538 -4.7983 -0.2024 13 6 5.2308 -4.8684 -0.3271 14 6 5.9875 -3.7144 -0.3440 15 6 5.3650 -2.4732 -0.2339 16 6 6.1730 -1.2299 -0.2567 17 6 6.8825 -0.8777 -1.4042 18 6 7.6330 0.2801 -1.4193 19 6 7.6829 1.0905 -0.2991 20 6 6.9818 0.7471 0.8421 21 6 6.2223 -0.4079 0.8664 22 6 5.5798 -0.5252 2.2297 23 7 6.3384 0.3913 3.1109 24 6 6.8530 1.4271 2.1865 25 1 -0.4850 0.8401 -0.0004 26 1 2.1504 -3.5253 0.0038 27 1 3.2683 -5.7058 -0.1906 28 1 5.7147 -5.8301 -0.4127 29 1 7.0615 -3.7736 -0.4419 30 1 6.8453 -1.5100 -2.2789 31 1 8.1826 0.5543 -2.3076 32 1 8.2722 1.9953 -0.3161 33 1 5.6547 -1.5486 2.5972 34 1 4.5349 -0.2195 2.1786 35 1 7.0959 -0.0924 3.5696 36 1 7.8267 1.7824 2.5235 37 1 6.1498 2.2575 2.1225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:20 Heat of formation + Delta-G solvation = 36.010062 kcal Electronic energy + Delta-G solvation = -21771.949024 eV Core-core repulsion = 18672.745064 eV Total energy + Delta-G solvation = -3099.203960 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20085 -38.96621 -36.67767 -35.91382 -32.59146 -32.23496 -29.61855 -29.47566 -28.71431 -27.00215 -25.27688 -23.52137 -22.24906 -21.38428 -20.71311 -20.05469 -17.89488 -17.33072 -16.49257 -15.99059 -15.28251 -14.93012 -14.67660 -14.34568 -14.00684 -13.77019 -13.66050 -13.42460 -13.05660 -12.70038 -12.63951 -12.40592 -12.23450 -11.82335 -11.47559 -11.44076 -11.22702 -11.01982 -10.81135 -10.78713 -10.52782 -10.13516 -9.43906 -8.91929 -8.79760 -8.61361 -8.26280 -8.02336 -7.37774 -6.45993 -4.12185 1.49437 1.62933 2.08228 2.22241 3.21593 3.25811 3.42131 3.98699 4.21972 4.37496 4.45103 4.65424 4.77562 5.05785 5.06576 5.11200 5.28297 5.38523 5.52577 5.58452 5.68252 5.72972 5.79700 5.91742 5.94740 6.13146 6.21368 6.30458 6.43825 6.47378 6.55552 6.60792 6.68532 6.80639 6.95056 7.04078 7.10825 7.23410 7.30382 7.39596 7.54314 7.74122 7.98308 8.89525 9.51078 10.61178 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.009763 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.116350 B = 2867.287471 C = 4280.889297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.203 6.203 10 C 0.174 3.826 11 C -0.222 4.222 12 C -0.071 4.071 13 C -0.208 4.208 14 C -0.062 4.062 15 C -0.137 4.137 16 C 0.010 3.990 17 C -0.110 4.110 18 C -0.124 4.124 19 C -0.110 4.110 20 C -0.137 4.137 21 C -0.097 4.097 22 C 0.081 3.919 23 N -0.656 5.656 24 C 0.084 3.916 25 H 0.280 0.720 26 H 0.135 0.865 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.334 0.666 36 H 0.074 0.926 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.181 -1.466 0.795 14.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.106 6.106 10 C 0.121 3.879 11 C -0.241 4.241 12 C -0.089 4.089 13 C -0.226 4.226 14 C -0.080 4.080 15 C -0.139 4.139 16 C 0.009 3.991 17 C -0.128 4.128 18 C -0.142 4.142 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.098 4.098 22 C -0.047 4.047 23 N -0.281 5.281 24 C -0.045 4.045 25 H 0.090 0.910 26 H 0.153 0.847 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.124 0.876 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.450 -0.691 1.173 13.519 hybrid contribution 0.677 0.160 -0.760 1.030 sum 14.127 -0.531 0.413 14.143 Atomic orbital electron populations 1.69640 1.05577 1.28559 1.47538 1.24413 0.94937 0.98693 0.95450 0.86306 0.80804 0.81635 0.79086 1.20064 1.20799 1.17554 1.20767 0.76896 0.96593 1.52344 0.87593 1.83592 1.22426 1.25366 1.79258 1.19043 0.90495 0.85713 0.92633 1.21252 1.01199 0.91764 1.09880 1.20875 0.94331 0.96737 0.96941 1.20575 0.93984 0.97263 1.10825 1.20673 0.98429 0.90862 0.98041 1.17827 0.90055 0.92311 1.13688 1.18050 0.95431 0.93493 0.92086 1.21177 0.97366 0.97138 0.97113 1.20910 1.00189 0.95219 0.97853 1.20378 1.00318 0.99777 0.92336 1.21117 0.98863 0.96786 0.97107 1.21102 0.96941 0.95033 0.96735 1.21567 0.99618 0.96698 0.86867 1.63503 1.25862 1.13157 1.25538 1.21499 0.99999 0.95863 0.87156 0.90994 0.84735 0.87147 0.87292 0.86909 0.85881 0.86100 0.86637 0.90543 0.87617 0.85108 0.90756 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.14 13.96 55.48 0.77 -24.36 16 2 C 0.07 1.92 5.49 -17.52 -0.10 1.83 16 3 Si 0.90 21.95 28.62 -169.99 -4.86 17.08 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.25 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.39 -10.75 9.95 30.88 0.31 -10.44 16 8 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 9 O -0.20 -5.15 7.55 0.36 0.00 -5.15 16 10 C 0.17 3.92 6.62 -38.75 -0.26 3.66 16 11 C -0.22 -4.66 9.16 -39.44 -0.36 -5.02 16 12 C -0.07 -1.24 10.03 -39.55 -0.40 -1.64 16 13 C -0.21 -3.37 10.03 -39.59 -0.40 -3.77 16 14 C -0.06 -1.05 9.73 -39.28 -0.38 -1.43 16 15 C -0.14 -2.70 5.14 -104.73 -0.54 -3.24 16 16 C 0.01 0.19 4.95 -104.93 -0.52 -0.33 16 17 C -0.11 -1.83 9.74 -39.23 -0.38 -2.21 16 18 C -0.12 -1.82 10.03 -39.63 -0.40 -2.21 16 19 C -0.11 -1.62 10.04 -39.53 -0.40 -2.02 16 20 C -0.14 -2.27 6.26 -104.36 -0.65 -2.92 16 21 C -0.10 -1.80 5.78 -104.00 -0.60 -2.40 16 22 C 0.08 1.48 7.22 -4.11 -0.03 1.45 16 23 N -0.66 -10.03 7.72 -114.03 -0.88 -10.91 16 24 C 0.08 1.23 7.46 -4.09 -0.03 1.20 16 25 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.14 2.96 5.64 -52.49 -0.30 2.67 16 27 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 30 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.11 2.27 7.90 -51.93 -0.41 1.86 16 35 H 0.33 4.24 8.92 -39.29 -0.35 3.89 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 315.76 15.07 4.76 4.76 Total: -1.00 -29.55 315.76 -9.62 -39.17 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -4.28 Total: 8.91 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: -5.13 Total: -29.50 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.11 Total: -35.27 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.55 -9.62 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.185 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds