Wall clock time and date at job start Fri Apr 10 2020 14:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86793 * 120.00007 * 2 1 4 4 H 1.48503 * 109.47082 * 269.99604 * 3 2 1 5 5 H 1.48502 * 109.47549 * 29.99630 * 3 2 1 6 6 H 1.48499 * 109.47236 * 149.99689 * 3 2 1 7 7 C 1.38650 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99840 * 0.02562 * 7 2 1 9 9 O 1.34808 * 120.00224 * 179.97438 * 7 2 1 10 10 C 1.35669 * 117.00296 * 185.10213 * 9 7 2 11 11 C 1.38752 * 120.13164 * 354.41074 * 10 9 7 12 12 C 1.38116 * 120.04344 * 179.97438 * 11 10 9 13 13 C 1.38441 * 120.32633 * 359.97438 * 12 11 10 14 14 C 1.38006 * 120.27344 * 359.95818 * 13 12 11 15 15 C 1.39289 * 119.94311 * 0.06185 * 14 13 12 16 16 C 1.48290 * 120.15832 * 180.23323 * 15 14 13 17 17 C 1.39430 * 120.11375 * 64.72470 * 16 15 14 18 18 C 1.37981 * 119.85343 * 180.02562 * 17 16 15 19 19 C 1.38349 * 120.14746 * 0.02562 * 18 17 16 20 20 C 1.38274 * 120.29887 * 359.97438 * 19 18 17 21 21 C 1.38250 * 120.03742 * 359.76062 * 20 19 18 22 22 C 1.51164 * 108.31292 * 179.84035 * 21 20 19 23 23 N 1.48053 * 105.72045 * 342.86787 * 22 21 20 24 24 C 1.48055 * 103.85720 * 27.36662 * 23 22 21 25 25 H 0.97001 * 119.99894 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.97768 * 359.97438 * 11 10 9 27 27 H 1.08006 * 119.83102 * 179.97438 * 12 11 10 28 28 H 1.08001 * 119.86054 * 180.02562 * 13 12 11 29 29 H 1.08004 * 120.03182 * 180.02562 * 14 13 12 30 30 H 1.07999 * 120.07130 * 359.97438 * 17 16 15 31 31 H 1.07999 * 119.92585 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.85035 * 179.97438 * 19 18 17 33 33 H 1.09001 * 110.34992 * 223.71828 * 22 21 20 34 34 H 1.08993 * 110.08245 * 101.88789 * 22 21 20 35 35 H 1.00902 * 111.00510 * 268.02388 * 23 22 21 36 36 H 1.08999 * 110.21078 * 213.37525 * 24 23 22 37 37 H 1.09005 * 110.20866 * 91.47182 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0463 -1.4001 5 1 1.4470 2.6527 0.6999 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3569 -1.2008 0.0000 10 6 3.9729 -2.4049 -0.1069 11 6 3.2249 -3.5735 -0.0928 12 6 3.8538 -4.7983 -0.2024 13 6 5.2308 -4.8684 -0.3271 14 6 5.9875 -3.7144 -0.3440 15 6 5.3650 -2.4732 -0.2339 16 6 6.1730 -1.2299 -0.2567 17 6 6.8825 -0.8777 -1.4042 18 6 7.6330 0.2801 -1.4193 19 6 7.6829 1.0905 -0.2991 20 6 6.9818 0.7471 0.8421 21 6 6.2223 -0.4079 0.8664 22 6 5.5798 -0.5252 2.2297 23 7 6.3384 0.3913 3.1109 24 6 6.8530 1.4271 2.1865 25 1 -0.4850 0.8401 -0.0004 26 1 2.1504 -3.5253 0.0038 27 1 3.2683 -5.7058 -0.1906 28 1 5.7147 -5.8301 -0.4127 29 1 7.0615 -3.7736 -0.4419 30 1 6.8453 -1.5100 -2.2789 31 1 8.1826 0.5543 -2.3076 32 1 8.2722 1.9953 -0.3161 33 1 5.6547 -1.5486 2.5972 34 1 4.5349 -0.2195 2.1786 35 1 7.0959 -0.0924 3.5696 36 1 7.8267 1.7824 2.5235 37 1 6.1498 2.2575 2.1225 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:55:19 Heat of formation + Delta-G solvation = 17.999426 kcal Electronic energy + Delta-G solvation = -21772.730024 eV Core-core repulsion = 18672.745064 eV Total energy + Delta-G solvation = -3099.984960 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.54602 -40.51204 -38.28466 -37.17359 -34.50377 -33.71191 -31.00276 -30.81204 -30.17773 -28.29676 -27.20774 -24.81767 -23.64958 -22.96032 -21.98318 -21.43642 -19.78323 -19.01065 -17.73137 -17.34447 -16.68088 -16.57605 -16.12071 -15.84050 -15.49589 -15.41394 -15.25601 -14.71794 -14.44108 -14.29170 -14.10648 -14.00577 -13.82781 -13.14268 -13.02732 -12.78359 -12.66404 -12.59588 -12.35038 -12.18772 -12.12223 -11.79487 -11.24596 -10.94997 -10.03513 -9.97950 -9.51467 -9.43594 -8.98310 -8.53813 -6.22951 0.16479 0.38517 0.63516 0.72312 1.24119 1.26860 1.46026 2.22296 2.70152 2.78789 3.01205 3.14798 3.21164 3.45463 3.79129 3.85510 4.13046 4.18943 4.22197 4.25407 4.37444 4.50294 4.58723 4.60797 4.65905 4.70784 4.86112 4.93763 5.03811 5.08081 5.17624 5.32395 5.37931 5.48736 5.52047 5.62751 5.68227 5.72607 5.79808 5.88741 6.07712 6.22583 6.31385 6.82527 7.59763 8.57961 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.009763 C = 0.006539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.116350 B = 2867.287471 C = 4280.889297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.020 3.980 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.392 4.392 8 H 0.083 0.917 9 O -0.227 6.227 10 C 0.137 3.863 11 C -0.243 4.243 12 C -0.072 4.072 13 C -0.181 4.181 14 C -0.061 4.061 15 C -0.132 4.132 16 C -0.020 4.020 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.146 4.146 21 C -0.126 4.126 22 C 0.089 3.911 23 N -0.657 5.657 24 C 0.085 3.915 25 H 0.283 0.717 26 H 0.109 0.891 27 H 0.141 0.859 28 H 0.154 0.846 29 H 0.147 0.853 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.151 0.849 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.351 0.649 36 H 0.112 0.888 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.294 -1.760 0.081 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.468 4.468 8 H 0.100 0.900 9 O -0.134 6.134 10 C 0.087 3.913 11 C -0.262 4.262 12 C -0.090 4.090 13 C -0.199 4.199 14 C -0.079 4.079 15 C -0.133 4.133 16 C -0.021 4.021 17 C -0.138 4.138 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.147 4.147 21 C -0.127 4.127 22 C -0.041 4.041 23 N -0.284 5.284 24 C -0.045 4.045 25 H 0.093 0.907 26 H 0.127 0.873 27 H 0.159 0.841 28 H 0.172 0.828 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.176 0.824 32 H 0.169 0.831 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.130 0.870 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.604 -1.025 0.464 17.640 hybrid contribution -0.350 -0.028 -0.563 0.664 sum 17.254 -1.052 -0.099 17.287 Atomic orbital electron populations 1.69715 1.06667 1.29321 1.50452 1.25057 0.95638 1.01402 0.95827 0.85425 0.79280 0.78535 0.78861 1.19865 1.19530 1.18446 1.20695 0.78359 0.95886 1.51865 0.89970 1.83563 1.20695 1.26920 1.82187 1.19582 0.92010 0.85295 0.94373 1.21307 1.00291 0.93309 1.11318 1.21227 0.95599 0.96253 0.95966 1.21135 0.93159 0.99015 1.06593 1.21141 1.00235 0.89865 0.96660 1.18199 0.88878 0.94312 1.11944 1.18253 0.96683 0.93815 0.93336 1.21424 0.97413 0.98353 0.96648 1.21361 0.99125 0.93941 0.99063 1.20847 0.99518 1.00713 0.91399 1.21467 0.98651 0.96120 0.98504 1.21231 0.98253 0.96479 0.96756 1.21265 0.97789 0.96871 0.88150 1.63373 1.26694 1.12954 1.25345 1.21577 1.01551 0.94990 0.86334 0.90712 0.87273 0.84127 0.82805 0.83510 0.84646 0.82427 0.83084 0.90862 0.92100 0.83243 0.86953 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.80 13.96 21.61 0.30 -55.50 16 2 C 0.02 1.15 5.49 84.83 0.47 1.61 16 3 Si 0.96 47.50 28.62 68.60 1.96 49.46 16 4 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.39 -23.12 9.95 67.92 0.68 -22.44 16 8 H 0.08 5.07 5.44 -2.91 -0.02 5.06 16 9 O -0.23 -12.25 7.55 -21.62 -0.16 -12.42 16 10 C 0.14 6.40 6.62 22.81 0.15 6.55 16 11 C -0.24 -10.62 9.16 22.36 0.20 -10.41 16 12 C -0.07 -2.43 10.03 22.29 0.22 -2.21 16 13 C -0.18 -5.17 10.03 22.26 0.22 -4.94 16 14 C -0.06 -1.89 9.73 22.47 0.22 -1.67 16 15 C -0.13 -5.13 5.14 -19.93 -0.10 -5.23 16 16 C -0.02 -0.75 4.95 -20.07 -0.10 -0.85 16 17 C -0.12 -3.72 9.74 22.50 0.22 -3.50 16 18 C -0.12 -2.99 10.03 22.24 0.22 -2.77 16 19 C -0.11 -2.76 10.04 22.30 0.22 -2.53 16 20 C -0.15 -4.54 6.26 -19.69 -0.12 -4.66 16 21 C -0.13 -4.63 5.78 -19.46 -0.11 -4.75 16 22 C 0.09 3.33 7.22 85.48 0.62 3.95 16 23 N -0.66 -19.69 7.72 -514.67 -3.97 -23.66 16 24 C 0.08 2.30 7.46 85.50 0.64 2.94 16 25 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 26 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 27 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 29 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.06 2.82 7.90 -2.39 -0.02 2.80 16 35 H 0.35 8.39 8.92 -89.69 -0.80 7.59 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 Total: -1.00 -69.48 315.76 2.07 -67.41 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.30 Total: 25.61 kcal Atomic # 6 Polarization: -54.55 SS G_CDS: 3.65 Total: -50.90 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -3.67 Total: -79.16 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.16 Total: -12.42 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.96 Total: 49.46 kcal Total: -69.48 2.07 -67.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.409 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds