Wall clock time and date at job start Fri Apr 10 2020 14:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86810 * 119.99531 * 2 1 4 4 H 1.48498 * 109.47020 * 269.99942 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00293 * 3 2 1 6 6 H 1.48498 * 109.46874 * 149.99833 * 3 2 1 7 7 C 1.38660 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00020 * 359.97438 * 7 2 1 9 9 O 1.34815 * 119.99867 * 180.02562 * 7 2 1 10 10 C 1.35638 * 117.00153 * 185.05426 * 9 7 2 11 11 C 1.38779 * 120.13624 * 354.39061 * 10 9 7 12 12 C 1.38095 * 120.05043 * 179.97438 * 11 10 9 13 13 C 1.38454 * 120.33105 * 0.02562 * 12 11 10 14 14 C 1.37987 * 120.27948 * 359.97438 * 13 12 11 15 15 C 1.39320 * 119.94209 * 0.02562 * 14 13 12 16 16 C 1.48235 * 120.16352 * 179.97438 * 15 14 13 17 17 C 1.39862 * 120.91310 * 130.02729 * 16 15 14 18 18 C 1.37919 * 119.01446 * 179.97438 * 17 16 15 19 19 N 1.31957 * 120.89150 * 359.97438 * 18 17 16 20 20 C 1.31926 * 122.01762 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.55720 * 180.02562 * 20 19 18 22 22 C 1.53000 * 117.49925 * 163.74766 * 21 20 19 23 23 C 1.53000 * 117.49542 * 95.09092 * 21 20 19 24 24 C 1.37965 * 120.88758 * 359.74611 * 20 19 18 25 25 H 0.97002 * 120.00335 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.97151 * 359.95907 * 11 10 9 27 27 H 1.07997 * 119.83220 * 179.72617 * 12 11 10 28 28 H 1.08008 * 119.86137 * 180.02562 * 13 12 11 29 29 H 1.07999 * 120.03025 * 180.02562 * 14 13 12 30 30 H 1.08006 * 120.49057 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.55485 * 180.02562 * 18 17 16 32 32 H 1.09001 * 115.55409 * 309.42727 * 21 20 19 33 33 H 1.08994 * 117.49825 * 0.02562 * 22 21 20 34 34 H 1.09001 * 117.49852 * 145.02495 * 22 21 20 35 35 H 1.09010 * 117.49753 * 214.98241 * 23 21 20 36 36 H 1.08997 * 117.50426 * 359.97438 * 23 21 20 37 37 H 1.07999 * 120.49808 * 180.26577 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4968 2.0466 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5469 1.4404 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3570 -1.2007 0.0000 10 6 3.9729 -2.4044 -0.1071 11 6 3.2251 -3.5734 -0.0937 12 6 3.8540 -4.7979 -0.2034 13 6 5.2312 -4.8681 -0.3265 14 6 5.9881 -3.7144 -0.3413 15 6 5.3656 -2.4729 -0.2314 16 6 6.1739 -1.2304 -0.2462 17 6 5.8427 -0.1677 -1.0930 18 6 6.6216 0.9703 -1.0743 19 7 7.6653 1.0639 -0.2723 20 6 8.0114 0.0856 0.5422 21 6 9.2139 0.2520 1.4352 22 6 9.3593 -0.7151 2.6118 23 6 8.9705 0.7439 2.8634 24 6 7.2839 -1.0856 0.5917 25 1 -0.4851 0.8400 0.0004 26 1 2.1504 -3.5253 0.0027 27 1 3.2690 -5.7056 -0.1881 28 1 5.7152 -5.8298 -0.4121 29 1 7.0621 -3.7738 -0.4379 30 1 4.9896 -0.2372 -1.7517 31 1 6.3735 1.7964 -1.7243 32 1 10.1266 0.5810 0.9383 33 1 8.5855 -1.4719 2.7398 34 1 10.3677 -1.0221 2.8893 35 1 9.7233 1.3962 3.3062 36 1 7.9408 0.9475 3.1570 37 1 7.5704 -1.8808 1.2640 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:42 Heat of formation + Delta-G solvation = 57.534106 kcal Electronic energy + Delta-G solvation = -21089.805591 eV Core-core repulsion = 17991.534984 eV Total energy + Delta-G solvation = -3098.270607 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21990 -39.11904 -36.92790 -36.61293 -33.15380 -32.46652 -30.58286 -29.57877 -28.92006 -25.42812 -24.25343 -23.78644 -22.35466 -21.49664 -21.34790 -20.04264 -17.98527 -17.51895 -16.50337 -16.08823 -15.29426 -15.12362 -14.89699 -14.66181 -14.15785 -13.96169 -13.90011 -13.70349 -13.29221 -12.73333 -12.49102 -12.31474 -12.08497 -11.71845 -11.56300 -11.17972 -11.05502 -10.94049 -10.82194 -10.66727 -10.46893 -10.29112 -9.58992 -9.46272 -9.10194 -8.97528 -8.57301 -8.17864 -7.46086 -6.53486 -4.20039 1.31193 1.46673 2.10991 2.18944 3.14749 3.19108 3.35512 3.68743 4.08117 4.14454 4.30228 4.44673 4.66633 4.81034 4.89616 4.97293 5.04299 5.11705 5.23809 5.43903 5.46072 5.56610 5.60163 5.63913 5.73930 5.84378 5.96813 5.97766 6.07522 6.08862 6.17290 6.30243 6.42741 6.62728 6.67222 6.93414 7.01565 7.10801 7.15830 7.45920 7.65928 7.90132 8.31923 8.81099 9.41003 10.53416 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.007064 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.653680 B = 3962.766804 C = 5439.893271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.069 3.931 3 Si 0.896 3.104 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.203 6.203 10 C 0.176 3.824 11 C -0.220 4.220 12 C -0.066 4.066 13 C -0.207 4.207 14 C -0.056 4.056 15 C -0.145 4.145 16 C 0.039 3.961 17 C -0.152 4.152 18 C 0.097 3.903 19 N -0.491 5.491 20 C 0.148 3.852 21 C -0.101 4.101 22 C -0.175 4.175 23 C -0.165 4.165 24 C -0.166 4.166 25 H 0.281 0.719 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.152 0.848 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.327 -3.012 1.341 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.468 4.468 8 H 0.125 0.875 9 O -0.107 6.107 10 C 0.122 3.878 11 C -0.240 4.240 12 C -0.084 4.084 13 C -0.226 4.226 14 C -0.074 4.074 15 C -0.146 4.146 16 C 0.031 3.969 17 C -0.172 4.172 18 C -0.059 4.059 19 N -0.201 5.201 20 C 0.011 3.989 21 C -0.120 4.120 22 C -0.213 4.213 23 C -0.202 4.202 24 C -0.186 4.186 25 H 0.091 0.909 26 H 0.154 0.846 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.134 0.866 30 H 0.154 0.846 31 H 0.170 0.830 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.669 -1.850 1.347 14.846 hybrid contribution -0.638 -0.121 -0.043 0.650 sum 14.031 -1.971 1.304 14.229 Atomic orbital electron populations 1.69629 1.05581 1.28711 1.47045 1.24436 0.94973 0.98759 0.95372 0.86316 0.80701 0.81565 0.79352 1.19480 1.20668 1.17980 1.20789 0.76729 0.96716 1.52533 0.87451 1.83576 1.22647 1.25431 1.79035 1.19021 0.90407 0.85815 0.92523 1.21254 1.01265 0.91679 1.09758 1.20913 0.94366 0.96792 0.96345 1.20597 0.93986 0.97328 1.10715 1.20703 0.98573 0.90758 0.97382 1.17753 0.89948 0.92026 1.14914 1.18981 0.92296 0.93097 0.92543 1.22293 1.00693 0.94023 1.00201 1.22537 0.90619 0.96793 0.95928 1.67262 1.16739 1.30178 1.05912 1.20092 0.94676 0.89725 0.94426 1.20697 0.96837 1.05571 0.88848 1.23095 1.03086 0.93504 1.01583 1.22965 1.02990 0.96986 0.97284 1.21955 0.96685 0.99064 1.00915 0.90854 0.84581 0.86948 0.87057 0.86635 0.84594 0.83045 0.86447 0.88168 0.88240 0.88387 0.88657 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.56 13.96 55.48 0.77 -23.78 16 2 C 0.07 1.88 5.49 -17.52 -0.10 1.79 16 3 Si 0.90 21.31 28.62 -169.99 -4.86 16.44 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.39 -10.61 9.95 30.89 0.31 -10.31 16 8 H 0.11 2.96 5.44 -52.49 -0.29 2.68 16 9 O -0.20 -5.10 7.01 0.44 0.00 -5.10 16 10 C 0.18 3.90 6.58 -38.73 -0.25 3.65 16 11 C -0.22 -4.53 9.16 -39.43 -0.36 -4.89 16 12 C -0.07 -1.12 10.03 -39.55 -0.40 -1.52 16 13 C -0.21 -3.26 10.03 -39.59 -0.40 -3.66 16 14 C -0.06 -0.92 9.55 -39.27 -0.38 -1.30 16 15 C -0.14 -2.81 5.53 -104.73 -0.58 -3.39 16 16 C 0.04 0.73 5.29 -104.59 -0.55 0.18 16 17 C -0.15 -2.88 8.91 -39.09 -0.35 -3.23 16 18 C 0.10 1.70 11.17 -17.61 -0.20 1.51 16 19 N -0.49 -8.68 10.26 -9.57 -0.10 -8.78 16 20 C 0.15 2.41 6.46 -82.65 -0.53 1.88 16 21 C -0.10 -1.29 6.21 -91.77 -0.57 -1.86 16 22 C -0.18 -1.84 9.80 -26.69 -0.26 -2.10 16 23 C -0.16 -1.89 10.24 -26.69 -0.27 -2.17 16 24 C -0.17 -2.76 8.91 -39.09 -0.35 -3.11 16 25 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.14 2.92 5.64 -52.48 -0.30 2.62 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 29 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 30 H 0.14 2.64 7.77 -52.48 -0.41 2.23 16 31 H 0.15 2.24 8.06 -52.48 -0.42 1.81 16 32 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.10 1.09 6.37 -51.93 -0.33 0.76 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.13 1.90 6.23 -52.49 -0.33 1.58 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -29.23 319.04 -8.78 -38.01 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.16 Total: 6.94 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -5.24 Total: -28.53 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.68 Total: -32.57 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.86 Total: 16.44 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.23 -8.78 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.545 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds