Wall clock time and date at job start Fri Apr 10 2020 14:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86810 * 119.99531 * 2 1 4 4 H 1.48498 * 109.47020 * 269.99942 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00293 * 3 2 1 6 6 H 1.48498 * 109.46874 * 149.99833 * 3 2 1 7 7 C 1.38660 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00020 * 359.97438 * 7 2 1 9 9 O 1.34815 * 119.99867 * 180.02562 * 7 2 1 10 10 C 1.35638 * 117.00153 * 185.05426 * 9 7 2 11 11 C 1.38779 * 120.13624 * 354.39061 * 10 9 7 12 12 C 1.38095 * 120.05043 * 179.97438 * 11 10 9 13 13 C 1.38454 * 120.33105 * 0.02562 * 12 11 10 14 14 C 1.37987 * 120.27948 * 359.97438 * 13 12 11 15 15 C 1.39320 * 119.94209 * 0.02562 * 14 13 12 16 16 C 1.48235 * 120.16352 * 179.97438 * 15 14 13 17 17 C 1.39862 * 120.91310 * 130.02729 * 16 15 14 18 18 C 1.37919 * 119.01446 * 179.97438 * 17 16 15 19 19 N 1.31957 * 120.89150 * 359.97438 * 18 17 16 20 20 C 1.31926 * 122.01762 * 359.97438 * 19 18 17 21 21 C 1.50700 * 119.55720 * 180.02562 * 20 19 18 22 22 C 1.53000 * 117.49925 * 163.74766 * 21 20 19 23 23 C 1.53000 * 117.49542 * 95.09092 * 21 20 19 24 24 C 1.37965 * 120.88758 * 359.74611 * 20 19 18 25 25 H 0.97002 * 120.00335 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.97151 * 359.95907 * 11 10 9 27 27 H 1.07997 * 119.83220 * 179.72617 * 12 11 10 28 28 H 1.08008 * 119.86137 * 180.02562 * 13 12 11 29 29 H 1.07999 * 120.03025 * 180.02562 * 14 13 12 30 30 H 1.08006 * 120.49057 * 359.97438 * 17 16 15 31 31 H 1.08004 * 119.55485 * 180.02562 * 18 17 16 32 32 H 1.09001 * 115.55409 * 309.42727 * 21 20 19 33 33 H 1.08994 * 117.49825 * 0.02562 * 22 21 20 34 34 H 1.09001 * 117.49852 * 145.02495 * 22 21 20 35 35 H 1.09010 * 117.49753 * 214.98241 * 23 21 20 36 36 H 1.08997 * 117.50426 * 359.97438 * 23 21 20 37 37 H 1.07999 * 120.49808 * 180.26577 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6179 0.0000 4 1 2.4968 2.0466 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5469 1.4404 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3570 -1.2007 0.0000 10 6 3.9729 -2.4044 -0.1071 11 6 3.2251 -3.5734 -0.0937 12 6 3.8540 -4.7979 -0.2034 13 6 5.2312 -4.8681 -0.3265 14 6 5.9881 -3.7144 -0.3413 15 6 5.3656 -2.4729 -0.2314 16 6 6.1739 -1.2304 -0.2462 17 6 5.8427 -0.1677 -1.0930 18 6 6.6216 0.9703 -1.0743 19 7 7.6653 1.0639 -0.2723 20 6 8.0114 0.0856 0.5422 21 6 9.2139 0.2520 1.4352 22 6 9.3593 -0.7151 2.6118 23 6 8.9705 0.7439 2.8634 24 6 7.2839 -1.0856 0.5917 25 1 -0.4851 0.8400 0.0004 26 1 2.1504 -3.5253 0.0027 27 1 3.2690 -5.7056 -0.1881 28 1 5.7152 -5.8298 -0.4121 29 1 7.0621 -3.7738 -0.4379 30 1 4.9896 -0.2372 -1.7517 31 1 6.3735 1.7964 -1.7243 32 1 10.1266 0.5810 0.9383 33 1 8.5855 -1.4719 2.7398 34 1 10.3677 -1.0221 2.8893 35 1 9.7233 1.3962 3.3062 36 1 7.9408 0.9475 3.1570 37 1 7.5704 -1.8808 1.2640 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:42 Heat of formation + Delta-G solvation = 42.526804 kcal Electronic energy + Delta-G solvation = -21090.456357 eV Core-core repulsion = 17991.534984 eV Total energy + Delta-G solvation = -3098.921373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.59531 -40.64217 -38.32402 -37.81966 -34.65517 -34.36051 -31.86421 -31.03696 -30.43744 -27.32264 -25.47556 -25.13483 -23.35038 -22.94743 -22.69238 -21.31735 -19.82805 -19.10906 -17.82792 -17.43309 -16.67453 -16.53168 -16.38092 -15.96135 -15.62498 -15.57254 -15.42690 -15.11602 -14.62612 -14.31682 -14.13789 -14.09450 -13.34179 -13.14354 -12.71273 -12.62379 -12.59829 -12.39407 -12.21511 -12.07973 -11.64110 -11.40917 -11.35767 -10.97987 -10.84862 -10.44396 -9.84691 -9.63049 -9.06239 -8.56107 -6.26464 -0.10420 0.14279 0.61318 0.75184 1.24469 1.26313 1.43974 2.20061 2.61670 2.73226 2.88519 3.00589 3.07506 3.30943 3.55953 3.83749 3.96270 4.03788 4.10455 4.19058 4.23083 4.24061 4.25492 4.47637 4.58721 4.62568 4.75247 4.79883 4.85621 4.95318 5.00475 5.14222 5.24219 5.25425 5.28017 5.42525 5.54020 5.67366 5.70553 5.76582 5.85876 6.17677 6.79229 6.99253 7.53410 8.55302 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.007064 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.653680 B = 3962.766804 C = 5439.893271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.396 4.396 8 H 0.086 0.914 9 O -0.230 6.230 10 C 0.138 3.862 11 C -0.240 4.240 12 C -0.065 4.065 13 C -0.179 4.179 14 C -0.053 4.053 15 C -0.144 4.144 16 C 0.019 3.981 17 C -0.174 4.174 18 C 0.093 3.907 19 N -0.504 5.504 20 C 0.146 3.854 21 C -0.118 4.118 22 C -0.155 4.155 23 C -0.167 4.167 24 C -0.164 4.164 25 H 0.285 0.715 26 H 0.113 0.887 27 H 0.145 0.855 28 H 0.159 0.841 29 H 0.152 0.848 30 H 0.119 0.881 31 H 0.172 0.828 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.155 -4.547 1.915 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.776 3.224 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.472 4.472 8 H 0.103 0.897 9 O -0.137 6.137 10 C 0.088 3.912 11 C -0.260 4.260 12 C -0.083 4.083 13 C -0.198 4.198 14 C -0.071 4.071 15 C -0.145 4.145 16 C 0.011 3.989 17 C -0.194 4.194 18 C -0.063 4.063 19 N -0.214 5.214 20 C 0.009 3.991 21 C -0.137 4.137 22 C -0.192 4.192 23 C -0.205 4.205 24 C -0.184 4.184 25 H 0.094 0.906 26 H 0.131 0.869 27 H 0.163 0.837 28 H 0.176 0.824 29 H 0.170 0.830 30 H 0.137 0.863 31 H 0.189 0.811 32 H 0.149 0.851 33 H 0.115 0.885 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.525 -3.422 1.911 18.936 hybrid contribution -1.575 0.057 -0.220 1.591 sum 16.950 -3.365 1.691 17.364 Atomic orbital electron populations 1.69702 1.06665 1.29481 1.49948 1.25082 0.95664 1.01463 0.95673 0.85467 0.78737 0.78466 0.79716 1.18267 1.19593 1.19498 1.20716 0.78089 0.96082 1.52296 0.89685 1.83544 1.21065 1.27001 1.82071 1.19580 0.91871 0.85543 0.94236 1.21310 1.00424 0.93102 1.11124 1.21301 0.95647 0.96335 0.94997 1.21182 0.93157 0.99085 1.06341 1.21187 1.00516 0.89607 0.95813 1.18099 0.88822 0.93812 1.13770 1.19162 0.93260 0.93034 0.93476 1.22288 1.00873 0.95170 1.01069 1.22854 0.90388 0.96903 0.96157 1.67376 1.16780 1.30830 1.06402 1.20720 0.95372 0.89075 0.93954 1.20810 0.95799 1.08088 0.89004 1.23220 1.04580 0.92571 0.98783 1.23032 1.02622 0.98675 0.96172 1.22181 0.95732 0.99973 1.00492 0.90564 0.86944 0.83736 0.82366 0.83015 0.86262 0.81076 0.85079 0.88514 0.85248 0.86100 0.90746 0.82644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.34 13.96 21.61 0.30 -54.04 16 2 C 0.02 1.18 5.49 84.84 0.47 1.64 16 3 Si 0.95 45.98 28.62 68.60 1.96 47.94 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -13.48 7.11 99.48 0.71 -12.78 16 7 C -0.40 -22.82 9.95 67.92 0.68 -22.14 16 8 H 0.09 5.11 5.44 -2.91 -0.02 5.09 16 9 O -0.23 -12.19 7.01 -21.35 -0.15 -12.34 16 10 C 0.14 6.29 6.58 22.82 0.15 6.44 16 11 C -0.24 -10.09 9.16 22.37 0.20 -9.89 16 12 C -0.06 -2.05 10.03 22.29 0.22 -1.82 16 13 C -0.18 -4.79 10.03 22.26 0.22 -4.57 16 14 C -0.05 -1.56 9.55 22.47 0.21 -1.34 16 15 C -0.14 -5.45 5.53 -19.93 -0.11 -5.56 16 16 C 0.02 0.69 5.29 -19.84 -0.10 0.59 16 17 C -0.17 -6.71 8.91 22.59 0.20 -6.51 16 18 C 0.09 3.23 11.17 84.60 0.94 4.18 16 19 N -0.50 -17.31 10.26 -184.19 -1.89 -19.20 16 20 C 0.15 4.49 6.46 42.48 0.27 4.77 16 21 C -0.12 -2.67 6.21 -11.54 -0.07 -2.74 16 22 C -0.15 -2.63 9.80 30.62 0.30 -2.33 16 23 C -0.17 -3.39 10.24 30.62 0.31 -3.08 16 24 C -0.16 -5.15 8.91 22.59 0.20 -4.95 16 25 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.11 5.19 5.64 -2.91 -0.02 5.18 16 27 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.12 4.90 7.77 -2.91 -0.02 4.87 16 31 H 0.17 5.03 8.06 -2.91 -0.02 5.00 16 32 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 33 H 0.10 1.73 6.37 -2.39 -0.02 1.72 16 34 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 1.87 8.14 -2.38 -0.02 1.86 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.16 3.98 6.23 -2.91 -0.02 3.97 16 Total: -1.00 -67.78 319.04 5.42 -62.36 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 1.09 Total: 22.60 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 4.11 Total: -47.31 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.59 Total: -73.24 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.15 Total: -12.34 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.96 Total: 47.94 kcal Total: -67.78 5.42 -62.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.883 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds