Wall clock time and date at job start Fri Apr 10 2020 14:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86797 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47074 * 269.99845 * 3 2 1 5 5 H 1.48492 * 109.47366 * 30.00218 * 3 2 1 6 6 H 1.48504 * 109.46942 * 150.00279 * 3 2 1 7 7 C 1.38652 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99855 * 0.02562 * 7 2 1 9 9 O 1.34816 * 119.99908 * 179.97438 * 7 2 1 10 10 C 1.35702 * 116.99688 * 185.05463 * 9 7 2 11 11 C 1.38997 * 119.94941 * 354.45526 * 10 9 7 12 12 C 1.37833 * 120.05028 * 179.97438 * 11 10 9 13 13 C 1.39427 * 119.95018 * 0.02562 * 12 11 10 14 14 C 1.48331 * 120.05411 * 180.02562 * 13 12 11 15 15 C 1.39806 * 120.54225 * 179.97438 * 14 13 12 16 16 C 1.38400 * 118.31126 * 180.02562 * 15 14 13 17 17 C 1.38325 * 119.28347 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.47599 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.50332 * 343.74890 * 18 17 16 20 20 C 1.53003 * 117.50078 * 275.08937 * 18 17 16 21 21 N 1.31882 * 121.03993 * 0.02562 * 17 16 15 22 22 C 1.31747 * 121.85782 * 359.97438 * 21 17 16 23 23 C 1.39440 * 119.89572 * 0.27237 * 13 12 11 24 24 C 1.37833 * 119.94448 * 359.45032 * 23 13 12 25 25 H 0.96998 * 119.99765 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.97712 * 359.95694 * 11 10 9 27 27 H 1.08001 * 120.02314 * 180.02562 * 12 11 10 28 28 H 1.07999 * 120.84380 * 0.04702 * 15 14 13 29 29 H 1.07998 * 120.35659 * 180.25396 * 16 15 14 30 30 H 1.09000 * 115.54844 * 129.42429 * 18 17 16 31 31 H 1.09000 * 117.49841 * 0.02562 * 19 18 17 32 32 H 1.09000 * 117.49582 * 145.01814 * 19 18 17 33 33 H 1.08996 * 117.49757 * 214.98342 * 20 18 17 34 34 H 1.09002 * 117.49658 * 359.97438 * 20 18 17 35 35 H 1.07994 * 119.70452 * 180.02562 * 22 21 17 36 36 H 1.07998 * 120.02777 * 179.70295 * 23 13 12 37 37 H 1.08002 * 119.97445 * 180.25308 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1360 -0.0014 9 8 3.3570 -1.2007 -0.0011 10 6 3.9730 -2.4052 -0.1081 11 6 3.2199 -3.5734 -0.0946 12 6 3.8434 -4.7978 -0.2037 13 6 5.2306 -4.8640 -0.3272 14 6 5.9039 -6.1804 -0.4453 15 6 7.2941 -6.2587 -0.5701 16 6 7.8740 -7.5107 -0.6778 17 6 7.0671 -8.6340 -0.6581 18 6 7.6939 -9.9995 -0.7756 19 6 9.1339 -10.0742 -1.2873 20 6 7.9784 -10.5275 -2.1831 21 7 5.7579 -8.5289 -0.5391 22 6 5.1610 -7.3592 -0.4337 23 6 5.9845 -3.6910 -0.3342 24 6 5.3561 -2.4686 -0.2306 25 1 -0.4850 0.8400 0.0004 26 1 2.1454 -3.5217 0.0018 27 1 3.2578 -5.7052 -0.1935 28 1 7.9002 -5.3649 -0.5819 29 1 8.9454 -7.6098 -0.7716 30 1 7.3907 -10.7226 -0.0185 31 1 9.6280 -9.1357 -1.5386 32 1 9.7778 -10.8468 -0.8671 33 1 7.8627 -11.5981 -2.3519 34 1 7.7118 -9.8875 -3.0242 35 1 4.0863 -7.3135 -0.3374 36 1 7.0595 -3.7400 -0.4249 37 1 5.9392 -1.5596 -0.2401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:12 Heat of formation + Delta-G solvation = 56.881726 kcal Electronic energy + Delta-G solvation = -19889.307597 eV Core-core repulsion = 16791.008700 eV Total energy + Delta-G solvation = -3098.298897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41933 -39.21226 -37.43833 -36.47285 -32.85149 -32.42605 -31.51338 -30.36154 -28.24759 -25.61111 -24.13688 -23.96850 -22.56790 -21.54606 -21.46501 -20.29999 -18.03019 -17.72235 -16.90437 -16.26106 -15.87191 -15.18298 -14.87725 -14.48199 -14.06791 -14.01652 -13.88966 -13.71864 -13.33875 -13.01906 -12.49173 -12.42826 -12.30445 -11.91739 -11.76573 -11.66416 -11.14473 -11.02951 -10.81527 -10.75313 -10.66477 -10.28042 -9.78924 -9.54986 -9.29474 -9.17894 -8.77132 -8.44986 -7.19126 -6.55651 -4.20415 0.85440 1.33717 2.00830 2.30570 3.14019 3.17903 3.31449 3.48397 3.86952 4.12333 4.13763 4.46999 4.60554 4.64833 4.71205 4.79354 4.93079 4.96975 5.00005 5.08377 5.15220 5.34203 5.40847 5.42243 5.57097 5.70641 5.78098 5.84069 5.85434 5.98784 6.04931 6.16968 6.28875 6.43411 6.63538 6.70503 6.94818 7.07418 7.13992 7.43118 7.65555 7.88349 8.08929 8.78232 9.38431 10.51043 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.051763 B = 0.002907 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.801610 B = 9629.013521 C =10062.952096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.110 0.890 9 O -0.207 6.207 10 C 0.167 3.833 11 C -0.221 4.221 12 C -0.052 4.052 13 C -0.152 4.152 14 C -0.052 4.052 15 C -0.088 4.088 16 C -0.160 4.160 17 C 0.128 3.872 18 C -0.101 4.101 19 C -0.176 4.176 20 C -0.165 4.165 21 N -0.473 5.473 22 C 0.092 3.908 23 C -0.057 4.057 24 C -0.192 4.192 25 H 0.282 0.718 26 H 0.137 0.863 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.117 0.883 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.343 -14.266 -1.925 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.127 0.873 9 O -0.111 6.111 10 C 0.113 3.887 11 C -0.240 4.240 12 C -0.070 4.070 13 C -0.154 4.154 14 C -0.054 4.054 15 C -0.114 4.114 16 C -0.180 4.180 17 C -0.009 4.009 18 C -0.119 4.119 19 C -0.213 4.213 20 C -0.202 4.202 21 N -0.180 5.180 22 C -0.066 4.066 23 C -0.076 4.076 24 C -0.212 4.212 25 H 0.092 0.908 26 H 0.155 0.845 27 H 0.133 0.867 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.174 0.826 36 H 0.134 0.866 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.680 -14.630 -1.884 20.811 hybrid contribution 0.526 1.503 0.018 1.593 sum 15.207 -13.127 -1.866 20.175 Atomic orbital electron populations 1.69641 1.05641 1.28833 1.46631 1.24513 0.95072 0.99023 0.95361 0.86162 0.80355 0.81205 0.79117 1.19715 1.20593 1.18258 1.20833 0.76711 0.96845 1.52226 0.87317 1.83552 1.22854 1.25970 1.78712 1.19242 0.91723 0.85445 0.92274 1.21224 1.01349 0.91593 1.09878 1.20860 0.93025 0.97045 0.96109 1.18123 0.93145 0.90681 1.13433 1.19828 0.93509 0.94228 0.97826 1.21602 0.94243 0.97702 0.97841 1.21798 1.00961 0.92698 1.02504 1.20189 0.89260 0.93389 0.98099 1.20704 0.97619 0.94733 0.98876 1.23086 0.90783 1.03468 1.04001 1.22965 1.02216 1.01546 0.93482 1.67264 1.11044 1.28131 1.11585 1.22831 1.00298 0.86498 0.97018 1.20675 0.98401 0.91057 0.97441 1.20139 0.91917 0.97841 1.11257 0.90774 0.84495 0.86657 0.84793 0.85095 0.86436 0.88341 0.88216 0.88334 0.88733 0.82590 0.86552 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.34 13.96 55.48 0.77 -23.57 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 20.87 28.62 -169.99 -4.86 16.00 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.39 -10.59 9.94 30.89 0.31 -10.28 16 8 H 0.11 2.99 5.42 -52.49 -0.28 2.71 16 9 O -0.21 -5.23 8.58 0.24 0.00 -5.23 16 10 C 0.17 3.67 6.65 -39.02 -0.26 3.41 16 11 C -0.22 -4.54 9.15 -39.45 -0.36 -4.90 16 12 C -0.05 -0.91 9.43 -39.29 -0.37 -1.28 16 13 C -0.15 -2.51 5.88 -104.85 -0.62 -3.13 16 14 C -0.05 -0.77 5.89 -104.75 -0.62 -1.38 16 15 C -0.09 -1.13 9.53 -38.94 -0.37 -1.50 16 16 C -0.16 -1.86 9.34 -39.49 -0.37 -2.23 16 17 C 0.13 1.64 6.46 -82.54 -0.53 1.10 16 18 C -0.10 -1.01 6.21 -91.77 -0.57 -1.58 16 19 C -0.18 -1.32 9.79 -26.70 -0.26 -1.58 16 20 C -0.16 -1.40 10.24 -26.69 -0.27 -1.67 16 21 N -0.47 -6.97 10.26 -9.19 -0.09 -7.06 16 22 C 0.09 1.34 10.60 -17.18 -0.18 1.16 16 23 C -0.06 -0.93 9.43 -39.28 -0.37 -1.30 16 24 C -0.19 -3.60 9.98 -39.45 -0.39 -3.99 16 25 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.14 2.93 5.62 -52.49 -0.30 2.64 16 27 H 0.12 1.70 6.23 -52.49 -0.33 1.38 16 28 H 0.13 1.43 6.32 -52.49 -0.33 1.10 16 29 H 0.13 1.16 6.24 -52.49 -0.33 0.84 16 30 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 0.69 6.38 -51.93 -0.33 0.36 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.16 2.06 6.22 -52.49 -0.33 1.73 16 36 H 0.12 1.51 6.27 -52.49 -0.33 1.18 16 37 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -29.08 314.40 -8.58 -37.67 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.80 Total: 4.95 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -5.34 Total: -27.50 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.68 Total: -30.63 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: 0.00 Total: -5.23 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.86 Total: 16.00 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.08 -8.58 -37.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.547 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds