Wall clock time and date at job start Fri Apr 10 2020 14:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86797 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47074 * 269.99845 * 3 2 1 5 5 H 1.48492 * 109.47366 * 30.00218 * 3 2 1 6 6 H 1.48504 * 109.46942 * 150.00279 * 3 2 1 7 7 C 1.38652 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99855 * 0.02562 * 7 2 1 9 9 O 1.34816 * 119.99908 * 179.97438 * 7 2 1 10 10 C 1.35702 * 116.99688 * 185.05463 * 9 7 2 11 11 C 1.38997 * 119.94941 * 354.45526 * 10 9 7 12 12 C 1.37833 * 120.05028 * 179.97438 * 11 10 9 13 13 C 1.39427 * 119.95018 * 0.02562 * 12 11 10 14 14 C 1.48331 * 120.05411 * 180.02562 * 13 12 11 15 15 C 1.39806 * 120.54225 * 179.97438 * 14 13 12 16 16 C 1.38400 * 118.31126 * 180.02562 * 15 14 13 17 17 C 1.38325 * 119.28347 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.47599 * 179.97438 * 17 16 15 19 19 C 1.53000 * 117.50332 * 343.74890 * 18 17 16 20 20 C 1.53003 * 117.50078 * 275.08937 * 18 17 16 21 21 N 1.31882 * 121.03993 * 0.02562 * 17 16 15 22 22 C 1.31747 * 121.85782 * 359.97438 * 21 17 16 23 23 C 1.39440 * 119.89572 * 0.27237 * 13 12 11 24 24 C 1.37833 * 119.94448 * 359.45032 * 23 13 12 25 25 H 0.96998 * 119.99765 * 359.97438 * 1 2 3 26 26 H 1.08001 * 119.97712 * 359.95694 * 11 10 9 27 27 H 1.08001 * 120.02314 * 180.02562 * 12 11 10 28 28 H 1.07999 * 120.84380 * 0.04702 * 15 14 13 29 29 H 1.07998 * 120.35659 * 180.25396 * 16 15 14 30 30 H 1.09000 * 115.54844 * 129.42429 * 18 17 16 31 31 H 1.09000 * 117.49841 * 0.02562 * 19 18 17 32 32 H 1.09000 * 117.49582 * 145.01814 * 19 18 17 33 33 H 1.08996 * 117.49757 * 214.98342 * 20 18 17 34 34 H 1.09002 * 117.49658 * 359.97438 * 20 18 17 35 35 H 1.07994 * 119.70452 * 180.02562 * 22 21 17 36 36 H 1.07998 * 120.02777 * 179.70295 * 23 13 12 37 37 H 1.08002 * 119.97445 * 180.25308 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1360 -0.0014 9 8 3.3570 -1.2007 -0.0011 10 6 3.9730 -2.4052 -0.1081 11 6 3.2199 -3.5734 -0.0946 12 6 3.8434 -4.7978 -0.2037 13 6 5.2306 -4.8640 -0.3272 14 6 5.9039 -6.1804 -0.4453 15 6 7.2941 -6.2587 -0.5701 16 6 7.8740 -7.5107 -0.6778 17 6 7.0671 -8.6340 -0.6581 18 6 7.6939 -9.9995 -0.7756 19 6 9.1339 -10.0742 -1.2873 20 6 7.9784 -10.5275 -2.1831 21 7 5.7579 -8.5289 -0.5391 22 6 5.1610 -7.3592 -0.4337 23 6 5.9845 -3.6910 -0.3342 24 6 5.3561 -2.4686 -0.2306 25 1 -0.4850 0.8400 0.0004 26 1 2.1454 -3.5217 0.0018 27 1 3.2578 -5.7052 -0.1935 28 1 7.9002 -5.3649 -0.5819 29 1 8.9454 -7.6098 -0.7716 30 1 7.3907 -10.7226 -0.0185 31 1 9.6280 -9.1357 -1.5386 32 1 9.7778 -10.8468 -0.8671 33 1 7.8627 -11.5981 -2.3519 34 1 7.7118 -9.8875 -3.0242 35 1 4.0863 -7.3135 -0.3374 36 1 7.0595 -3.7400 -0.4249 37 1 5.9392 -1.5596 -0.2401 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243593321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:11 Heat of formation + Delta-G solvation = 41.679215 kcal Electronic energy + Delta-G solvation = -19889.966827 eV Core-core repulsion = 16791.008700 eV Total energy + Delta-G solvation = -3098.958127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52195 -40.74370 -38.64905 -37.58546 -34.56977 -33.79699 -32.70269 -31.77830 -29.60032 -27.35897 -25.26856 -25.14532 -23.40211 -22.82052 -22.60480 -21.44253 -19.81184 -19.30772 -17.97772 -17.40951 -17.05501 -16.47347 -16.10813 -15.78425 -15.63514 -15.47013 -15.28157 -14.77839 -14.60669 -14.37004 -14.09492 -13.84830 -13.74466 -13.29015 -12.76365 -12.67901 -12.61071 -12.41690 -12.16016 -11.98089 -11.61667 -11.33975 -11.32729 -11.03497 -10.76710 -10.35170 -10.07630 -9.91426 -8.66872 -8.52866 -6.24948 -0.31190 0.32357 0.51368 0.93616 1.31851 1.36135 1.51895 2.26469 2.57728 2.81137 2.93822 3.03183 3.18471 3.30556 3.73820 3.75525 3.92240 3.94402 4.00688 4.07360 4.19265 4.24461 4.26501 4.45019 4.58236 4.70299 4.75249 4.84002 4.88558 4.92613 5.09936 5.14149 5.22438 5.25098 5.28199 5.34488 5.51370 5.66847 5.73575 5.78427 5.83922 6.14081 6.80702 7.04840 7.52391 8.58282 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.051763 B = 0.002907 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.801610 B = 9629.013521 C =10062.952096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.402 4.402 8 H 0.083 0.917 9 O -0.237 6.237 10 C 0.128 3.872 11 C -0.235 4.235 12 C -0.060 4.060 13 C -0.125 4.125 14 C -0.080 4.080 15 C -0.077 4.077 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.126 4.126 19 C -0.153 4.153 20 C -0.166 4.166 21 N -0.500 5.500 22 C 0.085 3.915 23 C -0.052 4.052 24 C -0.187 4.187 25 H 0.286 0.714 26 H 0.113 0.887 27 H 0.137 0.863 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.016 -15.977 -2.400 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.100 0.900 9 O -0.144 6.144 10 C 0.078 3.922 11 C -0.254 4.254 12 C -0.078 4.078 13 C -0.126 4.126 14 C -0.082 4.082 15 C -0.102 4.102 16 C -0.178 4.178 17 C -0.008 4.008 18 C -0.145 4.145 19 C -0.190 4.190 20 C -0.204 4.204 21 N -0.208 5.208 22 C -0.072 4.072 23 C -0.070 4.070 24 C -0.206 4.206 25 H 0.095 0.905 26 H 0.131 0.869 27 H 0.155 0.845 28 H 0.180 0.820 29 H 0.184 0.816 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.176 0.824 36 H 0.180 0.820 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 19.386 -16.392 -2.362 25.497 hybrid contribution -0.586 1.452 0.111 1.569 sum 18.800 -14.940 -2.251 24.119 Atomic orbital electron populations 1.69729 1.06995 1.29759 1.49549 1.25316 0.95888 1.02297 0.95324 0.85202 0.78876 0.77225 0.79351 1.19001 1.19276 1.18422 1.20734 0.78017 0.96245 1.52803 0.89953 1.83503 1.21333 1.27410 1.82143 1.19800 0.93304 0.85004 0.94078 1.21217 1.00476 0.92865 1.10844 1.21094 0.94201 0.96580 0.95959 1.18454 0.92624 0.92124 1.09392 1.19745 0.94725 0.92914 1.00836 1.21966 0.93324 0.99332 0.95620 1.22167 1.02629 0.91709 1.01283 1.20810 0.88843 0.95315 0.95853 1.20800 1.00036 0.93604 1.00062 1.23230 0.89574 1.04378 1.01801 1.23032 1.02866 1.02207 0.92279 1.67327 1.12461 1.28127 1.12933 1.22964 1.00762 0.86819 0.96676 1.21138 1.00578 0.89573 0.95689 1.20484 0.90447 0.99801 1.09864 0.90458 0.86890 0.84532 0.82044 0.81643 0.86453 0.87301 0.86210 0.87048 0.89633 0.82409 0.82027 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.38 13.96 21.61 0.30 -54.08 16 2 C 0.01 0.61 5.49 84.83 0.47 1.08 16 3 Si 0.97 44.46 28.62 68.60 1.96 46.43 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.40 -23.28 9.94 67.92 0.68 -22.60 16 8 H 0.08 5.00 5.42 -2.91 -0.02 4.99 16 9 O -0.24 -12.53 8.58 -22.07 -0.19 -12.72 16 10 C 0.13 5.80 6.65 22.63 0.15 5.95 16 11 C -0.23 -10.13 9.15 22.36 0.20 -9.93 16 12 C -0.06 -2.10 9.43 22.46 0.21 -1.89 16 13 C -0.12 -3.82 5.88 -20.01 -0.12 -3.93 16 14 C -0.08 -2.12 5.89 -19.95 -0.12 -2.24 16 15 C -0.08 -1.60 9.53 22.69 0.22 -1.38 16 16 C -0.16 -2.95 9.34 22.33 0.21 -2.74 16 17 C 0.13 2.90 6.46 42.57 0.28 3.17 16 18 C -0.13 -2.13 6.21 -11.54 -0.07 -2.20 16 19 C -0.15 -1.58 9.79 30.62 0.30 -1.28 16 20 C -0.17 -2.28 10.24 30.62 0.31 -1.97 16 21 N -0.50 -13.80 10.26 -182.98 -1.88 -15.68 16 22 C 0.08 2.34 10.60 84.97 0.90 3.24 16 23 C -0.05 -1.51 9.43 22.46 0.21 -1.30 16 24 C -0.19 -6.72 9.98 22.36 0.22 -6.50 16 25 H 0.29 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.11 5.36 5.62 -2.91 -0.02 5.34 16 27 H 0.14 4.05 6.23 -2.91 -0.02 4.03 16 28 H 0.16 2.40 6.32 -2.91 -0.02 2.39 16 29 H 0.17 1.92 6.24 -2.91 -0.02 1.90 16 30 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.11 0.92 6.38 -2.39 -0.02 0.90 16 32 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.16 4.06 6.22 -2.91 -0.02 4.04 16 36 H 0.16 3.23 6.27 -2.91 -0.02 3.21 16 37 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -67.63 314.40 5.36 -62.27 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.11 Total: 18.32 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 4.05 Total: -44.53 kcal Atomic # 7 Polarization: -68.19 SS G_CDS: -1.57 Total: -69.76 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.19 Total: -12.72 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.96 Total: 46.43 kcal Total: -67.63 5.36 -62.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.952 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds