Wall clock time and date at job start Fri Apr 10 2020 14:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86804 * 119.99808 * 2 1 4 4 H 1.48503 * 109.46876 * 239.99640 * 3 2 1 5 5 H 1.48500 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47356 * 119.99965 * 3 2 1 7 7 C 1.38654 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99811 * 180.02562 * 7 2 1 9 9 O 1.34807 * 119.99591 * 0.02562 * 7 2 1 10 10 C 1.35666 * 116.99674 * 185.06326 * 9 7 2 11 11 C 1.38755 * 120.13908 * 354.40311 * 10 9 7 12 12 C 1.38108 * 120.05588 * 180.32091 * 11 10 9 13 13 C 1.38453 * 120.32045 * 359.66999 * 12 11 10 14 14 C 1.38019 * 120.26764 * 0.02562 * 13 12 11 15 15 C 1.39288 * 119.94445 * 0.02562 * 14 13 12 16 16 C 1.48295 * 120.15607 * 180.02562 * 15 14 13 17 17 C 1.39820 * 120.54118 * 64.95578 * 16 15 14 18 18 C 1.38401 * 118.30373 * 180.02562 * 17 16 15 19 19 C 1.38316 * 119.29196 * 359.97438 * 18 17 16 20 20 N 1.31894 * 121.04127 * 0.02760 * 19 18 17 21 21 C 1.31739 * 121.85671 * 359.97438 * 20 19 18 22 22 C 1.50699 * 119.70586 * 179.72008 * 21 20 19 23 23 C 1.53001 * 117.49900 * 8.74968 * 22 21 20 24 24 C 1.53004 * 117.50001 * 300.08878 * 22 21 20 25 25 H 0.96995 * 120.00190 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.97509 * 359.97438 * 11 10 9 27 27 H 1.07991 * 119.84511 * 179.69760 * 12 11 10 28 28 H 1.07994 * 119.86490 * 180.02562 * 13 12 11 29 29 H 1.07999 * 120.02331 * 179.97438 * 14 13 12 30 30 H 1.07998 * 120.84720 * 0.03987 * 17 16 15 31 31 H 1.07998 * 120.35021 * 179.97438 * 18 17 16 32 32 H 1.08003 * 119.48029 * 180.02562 * 19 18 17 33 33 H 1.09004 * 115.54951 * 154.41607 * 22 21 20 34 34 H 1.09005 * 117.50072 * 359.97438 * 23 22 21 35 35 H 1.09000 * 117.49975 * 145.02354 * 23 22 21 36 36 H 1.09000 * 117.49812 * 214.98129 * 24 22 21 37 37 H 1.08999 * 117.49583 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3348 -2.3682 0.0005 10 6 2.0696 -3.5036 0.1078 11 6 3.4557 -3.4403 0.0943 12 6 4.2020 -4.5978 0.1969 13 6 3.5741 -5.8256 0.3205 14 6 2.1963 -5.9034 0.3416 15 6 1.4328 -4.7431 0.2378 16 6 -0.0480 -4.8212 0.2606 17 6 -0.7188 -5.2608 1.4059 18 6 -2.1013 -5.3161 1.3760 19 6 -2.7690 -4.9377 0.2253 20 7 -2.1090 -4.5271 -0.8402 21 6 -0.7935 -4.4576 -0.8592 22 6 -0.0885 -3.9873 -2.1053 23 6 -0.9512 -3.4148 -3.2317 24 6 -0.3057 -4.7940 -3.3871 25 1 -0.4850 0.8400 -0.0004 26 1 3.9513 -2.4856 -0.0020 27 1 5.2805 -4.5451 0.1812 28 1 4.1649 -6.7261 0.4006 29 1 1.7107 -6.8632 0.4377 30 1 -0.1720 -5.5497 2.2913 31 1 -2.6529 -5.6511 2.2420 32 1 -3.8479 -4.9793 0.1988 33 1 0.8953 -3.5443 -1.9500 34 1 -2.0288 -3.3786 -3.0717 35 1 -0.5348 -2.5955 -3.8178 36 1 0.5351 -4.8815 -4.0753 37 1 -0.9582 -5.6652 -3.3289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243688773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:15 Heat of formation + Delta-G solvation = 58.906977 kcal Electronic energy + Delta-G solvation = -21688.745555 eV Core-core repulsion = 18590.534480 eV Total energy + Delta-G solvation = -3098.211075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06416 -38.72588 -36.43466 -36.20790 -32.77229 -32.26808 -31.06031 -29.26350 -28.27901 -25.41449 -24.00123 -23.41320 -21.80145 -21.43535 -20.68848 -20.09504 -17.99654 -17.20046 -16.43927 -15.73960 -15.30182 -14.68797 -14.58556 -14.55018 -13.95438 -13.74691 -13.42248 -13.30420 -13.02646 -12.62561 -12.55578 -12.01915 -11.72665 -11.39421 -11.13825 -10.95181 -10.90948 -10.83223 -10.65207 -10.48938 -10.20358 -9.85999 -9.46218 -9.21656 -8.91838 -8.86223 -8.34782 -7.89410 -7.21608 -6.46814 -4.06655 1.53826 1.79359 2.17418 2.32548 3.10594 3.11705 3.14477 3.92630 4.13173 4.46843 4.63609 4.85348 5.02531 5.09790 5.21428 5.31125 5.32232 5.55852 5.59101 5.61269 5.70847 5.76413 5.84901 5.96327 6.06805 6.16784 6.20420 6.29528 6.45677 6.53030 6.62748 6.67665 6.77106 6.81223 6.90294 7.03412 7.13563 7.26370 7.31087 7.37671 7.73919 7.94701 8.57525 8.96832 9.64626 10.68922 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012717 B = 0.007733 C = 0.006222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.314491 B = 3620.078675 C = 4499.035740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.045 3.955 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.398 4.398 8 H 0.091 0.909 9 O -0.160 6.160 10 C 0.164 3.836 11 C -0.235 4.235 12 C -0.069 4.069 13 C -0.215 4.215 14 C -0.058 4.058 15 C -0.131 4.131 16 C -0.050 4.050 17 C -0.070 4.070 18 C -0.185 4.185 19 C 0.089 3.911 20 N -0.484 5.484 21 C 0.191 3.809 22 C -0.096 4.096 23 C -0.153 4.153 24 C -0.172 4.172 25 H 0.271 0.729 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.147 0.853 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -8.821 -0.538 8.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.161 4.161 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.474 4.474 8 H 0.108 0.892 9 O -0.062 6.062 10 C 0.109 3.891 11 C -0.254 4.254 12 C -0.087 4.087 13 C -0.234 4.234 14 C -0.076 4.076 15 C -0.134 4.134 16 C -0.052 4.052 17 C -0.096 4.096 18 C -0.205 4.205 19 C -0.068 4.068 20 N -0.192 5.192 21 C 0.053 3.947 22 C -0.115 4.115 23 C -0.190 4.190 24 C -0.210 4.210 25 H 0.081 0.919 26 H 0.147 0.853 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.491 -8.333 -1.299 8.448 hybrid contribution 1.036 0.708 1.016 1.615 sum 0.545 -7.625 -0.283 7.650 Atomic orbital electron populations 1.70049 1.05828 1.27767 1.44664 1.25253 0.95765 0.98674 0.96399 0.85851 0.78800 0.80033 0.79190 1.19470 1.20268 1.19540 1.21273 0.91750 0.80841 1.53545 0.89150 1.84023 1.33964 1.11135 1.77080 1.19279 0.90007 0.87456 0.92374 1.21116 0.93487 0.99143 1.11679 1.20815 0.98528 0.92360 0.96987 1.20503 0.94049 0.97014 1.11842 1.20655 0.93420 0.95794 0.97748 1.17632 0.90452 0.91397 1.13870 1.19300 0.93345 0.98818 0.93728 1.21582 0.94045 0.96790 0.97196 1.21891 0.94909 1.03981 0.99718 1.22526 0.99734 0.95634 0.88914 1.67245 1.09140 1.13715 1.29136 1.20352 0.88328 0.92554 0.93445 1.20912 1.00745 1.03848 0.85950 1.22818 0.99941 0.95417 1.00851 1.22926 1.03120 0.95655 0.99262 0.91947 0.85348 0.87439 0.87468 0.87086 0.85347 0.85505 0.83551 0.85575 0.87935 0.89078 0.89010 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.47 13.67 55.48 0.76 -23.72 16 2 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 3 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.40 -10.74 9.49 30.89 0.29 -10.44 16 8 H 0.09 2.26 5.21 -52.49 -0.27 1.98 16 9 O -0.16 -4.33 7.82 0.37 0.00 -4.33 16 10 C 0.16 3.81 5.25 -38.75 -0.20 3.61 16 11 C -0.23 -4.94 9.16 -39.44 -0.36 -5.30 16 12 C -0.07 -1.22 10.03 -39.55 -0.40 -1.61 16 13 C -0.22 -3.62 10.03 -39.58 -0.40 -4.01 16 14 C -0.06 -1.03 9.74 -39.27 -0.38 -1.42 16 15 C -0.13 -2.74 4.65 -104.72 -0.49 -3.23 16 16 C -0.05 -1.03 4.96 -104.75 -0.52 -1.55 16 17 C -0.07 -1.26 9.90 -38.93 -0.39 -1.65 16 18 C -0.19 -2.95 10.10 -39.49 -0.40 -3.35 16 19 C 0.09 1.52 11.17 -17.50 -0.20 1.32 16 20 N -0.48 -9.75 9.32 -9.19 -0.09 -9.83 16 21 C 0.19 4.06 6.27 -82.22 -0.52 3.54 16 22 C -0.10 -1.99 5.15 -91.77 -0.47 -2.46 16 23 C -0.15 -2.87 10.02 -26.69 -0.27 -3.13 16 24 C -0.17 -2.91 10.24 -26.69 -0.27 -3.18 16 25 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 26 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.15 1.97 8.06 -52.48 -0.42 1.55 16 33 H 0.13 2.92 5.35 -51.93 -0.28 2.64 16 34 H 0.10 1.94 7.57 -51.93 -0.39 1.55 16 35 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -30.40 318.18 -8.79 -39.19 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.18 Total: 10.45 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -5.06 Total: -31.75 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.67 Total: -33.55 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: 0.00 Total: -4.33 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.40 -8.79 -39.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243688773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.096 kcal (2) G-P(sol) polarization free energy of solvation -30.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds