Wall clock time and date at job start Fri Apr 10 2020 14:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00391 * 2 1 4 4 H 1.48504 * 109.47335 * 270.00365 * 3 2 1 5 5 H 1.48501 * 109.47133 * 30.00370 * 3 2 1 6 6 H 1.48505 * 109.47240 * 149.99911 * 3 2 1 7 7 C 1.37878 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00407 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47416 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46901 * 180.02562 * 10 9 7 12 12 O 1.21273 * 120.00622 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99294 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99852 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47316 * 34.99388 * 14 13 11 16 16 C 1.53004 * 109.47030 * 275.00059 * 14 13 11 17 17 O 1.42899 * 109.47092 * 295.00016 * 16 14 13 18 18 C 1.50696 * 109.47363 * 155.00127 * 14 13 11 19 19 C 1.38248 * 119.97128 * 219.99706 * 18 14 13 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 14 21 21 C 1.38458 * 119.97492 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38197 * 119.97511 * 359.47283 * 23 21 20 25 25 H 0.97006 * 119.99507 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47342 * 59.99641 * 9 7 2 27 27 H 1.09000 * 109.47146 * 300.00228 * 9 7 2 28 28 H 1.09001 * 109.46987 * 59.99952 * 10 9 7 29 29 H 1.08999 * 109.46784 * 299.99526 * 10 9 7 30 30 H 0.97002 * 120.00980 * 0.02562 * 13 11 10 31 31 H 1.08998 * 109.47125 * 54.99253 * 16 14 13 32 32 H 1.08999 * 109.47143 * 174.99948 * 16 14 13 33 33 H 0.96699 * 114.00087 * 179.97438 * 17 16 14 34 34 H 1.08001 * 119.98881 * 0.02562 * 19 18 14 35 35 H 1.07995 * 120.01604 * 180.02562 * 20 19 18 36 36 H 1.08007 * 120.01064 * 179.75151 * 23 21 20 37 37 H 1.07994 * 119.98821 * 180.29814 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 8 0.2787 -4.9672 -0.0011 13 7 2.1654 -6.1343 -0.0018 14 6 1.4328 -7.4031 -0.0030 15 1 0.5223 -7.2964 -0.5925 16 6 1.0684 -7.7830 1.4337 17 8 2.2624 -8.0365 2.1768 18 6 2.2970 -8.4816 -0.6039 19 6 1.7389 -9.4233 -1.4483 20 6 2.5304 -10.4124 -2.0004 21 6 3.8827 -10.4605 -1.7072 22 9 4.6575 -11.4274 -2.2459 23 6 4.4394 -9.5202 -0.8567 24 6 3.6471 -8.5285 -0.3104 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8902 27 1 0.6246 -2.5570 0.8897 28 1 2.8718 -3.6044 0.8895 29 1 2.8717 -3.6044 -0.8906 30 1 3.1354 -6.1345 -0.0015 31 1 0.5188 -6.9641 1.8977 32 1 0.4479 -8.6790 1.4263 33 1 2.1070 -8.2831 3.0988 34 1 0.6841 -9.3854 -1.6773 35 1 2.0944 -11.1477 -2.6604 36 1 5.4934 -9.5591 -0.6241 37 1 4.0820 -7.7921 0.3491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291855580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:41 Heat of formation + Delta-G solvation = -118.818526 kcal Electronic energy + Delta-G solvation = -21178.349055 eV Core-core repulsion = 17641.661998 eV Total energy + Delta-G solvation = -3536.687056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.10486 -40.14124 -38.73042 -36.90446 -34.51751 -33.44989 -31.65412 -31.29667 -30.54596 -28.18615 -25.66914 -23.66073 -23.39235 -21.92097 -20.61512 -19.70101 -17.97432 -17.64094 -16.97537 -16.63073 -16.19868 -15.81180 -15.51467 -15.31982 -14.99476 -14.45538 -14.23360 -14.10819 -13.78695 -13.65626 -13.32811 -12.90756 -12.59069 -12.36157 -12.14747 -11.88964 -11.41651 -11.22015 -11.15959 -10.92845 -10.59880 -10.17212 -9.95708 -9.67364 -9.33643 -9.21479 -9.06779 -8.90297 -8.72472 -8.32025 -5.96321 -4.00529 0.86949 1.00880 3.18589 3.27033 3.33488 3.39551 3.42118 3.56518 4.02321 4.14731 4.40053 4.47602 4.49576 4.64943 5.00633 5.05859 5.18471 5.25856 5.34920 5.38776 5.54071 5.64792 5.76581 5.78893 5.87844 6.00594 6.22737 6.24073 6.26419 6.63401 6.69067 6.89294 7.47636 7.74268 7.85442 7.85990 8.06857 8.38610 8.73904 9.07962 9.63036 11.14621 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.003136 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.065979 B = 8925.795448 C = 9285.184966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.512 3.488 12 O -0.537 6.537 13 N -0.732 5.732 14 C 0.188 3.812 15 H 0.108 0.892 16 C 0.068 3.932 17 O -0.567 6.567 18 C -0.093 4.093 19 C -0.082 4.082 20 C -0.155 4.155 21 C 0.094 3.906 22 F -0.143 7.143 23 C -0.154 4.154 24 C -0.059 4.059 25 H 0.261 0.739 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.399 0.601 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.377 0.623 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 -22.417 0.355 23.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.301 3.699 12 O -0.412 6.412 13 N -0.386 5.386 14 C 0.083 3.917 15 H 0.126 0.874 16 C -0.011 4.011 17 O -0.372 6.372 18 C -0.094 4.094 19 C -0.100 4.100 20 C -0.174 4.174 21 C 0.075 3.925 22 F -0.121 7.121 23 C -0.173 4.173 24 C -0.078 4.078 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.234 0.766 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.224 0.776 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.840 -22.158 -0.242 22.916 hybrid contribution 0.763 0.509 0.440 1.017 sum 6.603 -21.648 0.198 22.634 Atomic orbital electron populations 1.70000 1.06053 1.26564 1.50255 1.25024 0.94831 0.99230 0.95311 0.86591 0.79780 0.83495 0.78073 1.20671 1.21241 1.19878 1.21229 0.92952 0.91025 1.51323 0.92600 1.18892 0.93152 0.89356 0.98586 1.21874 1.00757 0.91798 1.02576 1.21605 0.88666 0.85615 0.73977 1.90659 1.14406 1.87617 1.48534 1.46267 1.10160 1.04586 1.77604 1.19807 0.95385 0.82237 0.94279 0.87404 1.22598 0.86939 0.99489 0.92077 1.86444 1.31775 1.92108 1.26844 1.19906 0.94557 0.97098 0.97862 1.20896 1.00199 0.93507 0.95433 1.21075 0.92148 1.01097 1.03057 1.17760 0.89160 0.88526 0.97036 1.91494 1.74902 1.61275 1.84479 1.21153 1.01274 0.95811 0.99082 1.20828 0.92773 0.97130 0.97047 0.92967 0.95818 0.95856 0.90156 0.90202 0.76586 0.92189 0.93039 0.77612 0.84799 0.84733 0.84713 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.61 5.64 -27.88 -0.16 -2.77 16 11 C 0.51 9.56 7.79 -10.99 -0.09 9.47 16 12 O -0.54 -12.07 15.64 5.56 0.09 -11.98 16 13 N -0.73 -10.13 4.97 -54.93 -0.27 -10.40 16 14 C 0.19 2.27 2.61 -69.08 -0.18 2.09 16 15 H 0.11 1.40 7.44 -51.93 -0.39 1.02 16 16 C 0.07 0.74 6.84 37.16 0.25 1.00 16 17 O -0.57 -5.59 12.04 -35.23 -0.42 -6.01 16 18 C -0.09 -0.98 4.83 -104.62 -0.51 -1.48 16 19 C -0.08 -0.76 9.67 -39.59 -0.38 -1.15 16 20 C -0.15 -1.43 10.03 -39.52 -0.40 -1.82 16 21 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 22 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 23 C -0.15 -1.48 10.03 -39.51 -0.40 -1.87 16 24 C -0.06 -0.59 8.05 -39.59 -0.32 -0.91 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.40 4.68 6.87 -40.82 -0.28 4.40 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.38 2.28 9.12 45.56 0.42 2.70 16 34 H 0.13 1.00 8.04 -52.49 -0.42 0.58 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 37 H 0.14 1.27 6.67 -52.49 -0.35 0.92 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -34.36 324.74 -6.89 -41.25 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -3.94 Total: 3.28 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.99 Total: -9.53 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.46 Total: -37.00 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.34 Total: -17.99 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.36 -6.89 -41.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291855580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.565 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds