Wall clock time and date at job start Fri Apr 10 2020 14:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00197 * 2 1 4 4 H 1.48500 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47364 * 299.99785 * 3 2 1 6 6 H 1.48495 * 109.47390 * 60.00045 * 3 2 1 7 7 C 1.37875 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47465 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99633 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00038 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00126 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47431 * 179.97438 * 14 13 11 16 16 H 1.08995 * 109.47176 * 304.99938 * 15 14 13 17 17 O 1.42901 * 109.47205 * 64.99864 * 15 14 13 18 18 C 1.50702 * 109.47263 * 184.99755 * 15 14 13 19 19 C 1.38218 * 120.01214 * 265.02358 * 18 15 14 20 20 C 1.38225 * 120.02313 * 179.97438 * 19 18 15 21 21 C 1.38270 * 120.05340 * 359.97438 * 20 19 18 22 22 C 1.38175 * 120.02272 * 359.97438 * 21 20 19 23 23 C 1.38436 * 120.01380 * 84.99918 * 18 15 14 24 24 F 1.35106 * 120.02572 * 0.02562 * 23 18 15 25 25 H 0.97006 * 119.99632 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46503 * 59.99691 * 9 7 2 27 27 H 1.08999 * 109.46670 * 300.00556 * 9 7 2 28 28 H 1.09001 * 109.46860 * 59.99704 * 10 9 7 29 29 H 1.09005 * 109.47122 * 300.00460 * 10 9 7 30 30 H 0.97006 * 120.00266 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.47581 * 59.99275 * 14 13 11 32 32 H 1.09005 * 109.46979 * 299.99677 * 14 13 11 33 33 H 0.96696 * 113.99787 * 59.99922 * 17 15 14 34 34 H 1.08000 * 119.98639 * 359.97438 * 19 18 15 35 35 H 1.08003 * 119.97189 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.98207 * 180.27551 * 21 20 19 37 37 H 1.08001 * 120.00487 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 8 0.2787 -4.9671 -0.0011 13 7 2.1653 -6.1344 -0.0008 14 6 1.4328 -7.4031 -0.0019 15 6 2.4270 -8.5661 -0.0018 16 1 3.1117 -8.4588 -0.8430 17 8 3.1684 -8.5588 1.2198 18 6 1.6776 -9.8676 -0.1268 19 6 1.3438 -10.5847 1.0066 20 6 0.6560 -11.7783 0.8923 21 6 0.3007 -12.2559 -0.3557 22 6 0.6324 -11.5401 -1.4901 23 6 1.3228 -10.3451 -1.3768 24 9 1.6486 -9.6449 -2.4854 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5566 -0.8903 27 1 0.6246 -2.5570 0.8896 28 1 2.8717 -3.6044 0.8894 29 1 2.8718 -3.6044 -0.8905 30 1 3.1354 -6.1345 -0.0004 31 1 0.8070 -7.4606 -0.8926 32 1 0.8052 -7.4611 0.8874 33 1 2.6218 -8.6506 2.0121 34 1 1.6205 -10.2124 1.9819 35 1 0.3953 -12.3378 1.7785 36 1 -0.2406 -13.1863 -0.4434 37 1 0.3543 -11.9132 -2.4647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292302021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:44 Heat of formation + Delta-G solvation = -121.507828 kcal Electronic energy + Delta-G solvation = -20950.625848 eV Core-core repulsion = 17413.822175 eV Total energy + Delta-G solvation = -3536.803673 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.23622 -40.03656 -39.00863 -37.37873 -34.12882 -33.41665 -32.09299 -31.05672 -30.89329 -28.40312 -25.69969 -23.94904 -23.08002 -21.73947 -21.45613 -19.61812 -18.40449 -17.30361 -17.01058 -16.91459 -16.07926 -15.85000 -15.55268 -15.46178 -15.04132 -14.61972 -14.53330 -14.36705 -14.08173 -13.52362 -13.09298 -12.92536 -12.79075 -12.43187 -12.15392 -11.91751 -11.74632 -11.48726 -11.13043 -10.92532 -10.66357 -10.54092 -9.93221 -9.64405 -9.43855 -9.17316 -9.08177 -8.95618 -8.80323 -8.30092 -5.94109 -3.98237 0.68438 0.76544 3.09464 3.27347 3.34253 3.40709 3.43782 3.47707 3.82271 3.99267 4.22276 4.31529 4.48755 4.49952 4.61276 4.74952 4.86489 4.99616 5.35426 5.40911 5.49057 5.53021 5.58067 5.73579 5.80851 5.90520 5.95129 6.26619 6.28460 6.42997 6.68174 6.92693 7.17349 7.77196 7.88940 7.90607 8.09605 8.41220 8.79724 9.10669 9.65218 11.16939 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039275 B = 0.002767 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.752289 B =10116.656559 C =10237.801691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.536 6.536 13 N -0.739 5.739 14 C 0.096 3.904 15 C 0.140 3.860 16 H 0.118 0.882 17 O -0.546 6.546 18 C -0.149 4.149 19 C -0.081 4.081 20 C -0.127 4.127 21 C -0.090 4.090 22 C -0.152 4.152 23 C 0.110 3.890 24 F -0.133 7.133 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.401 0.599 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.377 0.623 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -27.228 0.955 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.411 6.411 13 N -0.394 5.394 14 C -0.029 4.029 15 C 0.081 3.919 16 H 0.136 0.864 17 O -0.353 6.353 18 C -0.151 4.151 19 C -0.099 4.099 20 C -0.145 4.145 21 C -0.108 4.108 22 C -0.171 4.171 23 C 0.091 3.909 24 F -0.112 7.112 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.236 0.764 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.226 0.774 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.712 -26.992 0.504 27.250 hybrid contribution 0.376 0.845 0.073 0.927 sum 4.088 -26.147 0.578 26.471 Atomic orbital electron populations 1.70016 1.06058 1.26436 1.50382 1.25035 0.94834 0.99257 0.95352 0.86528 0.80016 0.83817 0.77558 1.19740 1.21035 1.21030 1.21268 0.92988 0.90999 1.51131 0.92525 1.18906 0.93198 0.89413 0.98606 1.21861 1.00699 0.91768 1.02581 1.21601 0.88640 0.85617 0.74319 1.90668 1.14518 1.87652 1.48305 1.46090 1.10280 1.04949 1.78063 1.21854 0.94446 0.83429 1.03190 1.20934 0.92887 0.89144 0.88969 0.86392 1.86649 1.37325 1.96019 1.15269 1.20485 1.02805 0.99143 0.92689 1.20810 0.96787 0.94625 0.97711 1.21209 0.98951 0.96338 0.98006 1.21076 0.98430 0.99601 0.91731 1.21194 1.00724 0.94453 1.00722 1.17499 0.99515 0.91786 0.82121 1.91536 1.90543 1.78131 1.50978 0.93031 0.95830 0.95844 0.90148 0.90197 0.76412 0.90836 0.91240 0.77425 0.84852 0.85027 0.84850 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.77 13.29 55.43 0.74 -27.03 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.53 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.13 -2.68 5.64 -27.89 -0.16 -2.84 16 11 C 0.51 10.08 7.83 -10.99 -0.09 10.00 16 12 O -0.54 -12.96 15.98 5.56 0.09 -12.87 16 13 N -0.74 -10.75 5.50 -60.30 -0.33 -11.09 16 14 C 0.10 1.22 5.29 -4.04 -0.02 1.20 16 15 C 0.14 1.39 3.02 -27.88 -0.08 1.30 16 16 H 0.12 1.20 7.79 -51.93 -0.40 0.79 16 17 O -0.55 -5.03 12.94 -35.23 -0.46 -5.49 16 18 C -0.15 -1.39 5.07 -104.56 -0.53 -1.92 16 19 C -0.08 -0.59 9.30 -39.59 -0.37 -0.96 16 20 C -0.13 -0.80 10.04 -39.57 -0.40 -1.20 16 21 C -0.09 -0.57 10.04 -39.59 -0.40 -0.97 16 22 C -0.15 -1.20 10.03 -39.52 -0.40 -1.60 16 23 C 0.11 1.09 7.24 -39.42 -0.29 0.81 16 24 F -0.13 -1.52 16.57 2.25 0.04 -1.48 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.40 4.85 8.47 -40.82 -0.35 4.50 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.38 2.33 7.32 45.56 0.33 2.66 16 34 H 0.13 0.67 6.41 -52.49 -0.34 0.33 16 35 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 36 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 326.46 15.07 4.92 4.92 Total: -1.00 -35.88 326.46 -7.38 -43.25 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.09 Total: 2.07 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: -3.25 Total: -9.18 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.40 Total: -38.12 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.37 Total: -18.35 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.88 -7.38 -43.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292302021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.253 kcal (2) G-P(sol) polarization free energy of solvation -35.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds