Wall clock time and date at job start Fri Apr 10 2020 14:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00197 * 2 1 4 4 H 1.48500 * 109.47398 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47364 * 299.99785 * 3 2 1 6 6 H 1.48495 * 109.47390 * 60.00045 * 3 2 1 7 7 C 1.37875 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47465 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99633 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00038 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00126 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47431 * 179.97438 * 14 13 11 16 16 H 1.08995 * 109.47176 * 304.99938 * 15 14 13 17 17 O 1.42901 * 109.47205 * 64.99864 * 15 14 13 18 18 C 1.50702 * 109.47263 * 184.99755 * 15 14 13 19 19 C 1.38218 * 120.01214 * 265.02358 * 18 15 14 20 20 C 1.38225 * 120.02313 * 179.97438 * 19 18 15 21 21 C 1.38270 * 120.05340 * 359.97438 * 20 19 18 22 22 C 1.38175 * 120.02272 * 359.97438 * 21 20 19 23 23 C 1.38436 * 120.01380 * 84.99918 * 18 15 14 24 24 F 1.35106 * 120.02572 * 0.02562 * 23 18 15 25 25 H 0.97006 * 119.99632 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46503 * 59.99691 * 9 7 2 27 27 H 1.08999 * 109.46670 * 300.00556 * 9 7 2 28 28 H 1.09001 * 109.46860 * 59.99704 * 10 9 7 29 29 H 1.09005 * 109.47122 * 300.00460 * 10 9 7 30 30 H 0.97006 * 120.00266 * 359.97438 * 13 11 10 31 31 H 1.09001 * 109.47581 * 59.99275 * 14 13 11 32 32 H 1.09005 * 109.46979 * 299.99677 * 14 13 11 33 33 H 0.96696 * 113.99787 * 59.99922 * 17 15 14 34 34 H 1.08000 * 119.98639 * 359.97438 * 19 18 15 35 35 H 1.08003 * 119.97189 * 180.02562 * 20 19 18 36 36 H 1.07999 * 119.98207 * 180.27551 * 21 20 19 37 37 H 1.08001 * 120.00487 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6621 -0.0005 11 6 1.4915 -4.9672 -0.0012 12 8 0.2787 -4.9671 -0.0011 13 7 2.1653 -6.1344 -0.0008 14 6 1.4328 -7.4031 -0.0019 15 6 2.4270 -8.5661 -0.0018 16 1 3.1117 -8.4588 -0.8430 17 8 3.1684 -8.5588 1.2198 18 6 1.6776 -9.8676 -0.1268 19 6 1.3438 -10.5847 1.0066 20 6 0.6560 -11.7783 0.8923 21 6 0.3007 -12.2559 -0.3557 22 6 0.6324 -11.5401 -1.4901 23 6 1.3228 -10.3451 -1.3768 24 9 1.6486 -9.6449 -2.4854 25 1 -0.4850 0.8401 -0.0004 26 1 0.6239 -2.5566 -0.8903 27 1 0.6246 -2.5570 0.8896 28 1 2.8717 -3.6044 0.8894 29 1 2.8718 -3.6044 -0.8905 30 1 3.1354 -6.1345 -0.0004 31 1 0.8070 -7.4606 -0.8926 32 1 0.8052 -7.4611 0.8874 33 1 2.6218 -8.6506 2.0121 34 1 1.6205 -10.2124 1.9819 35 1 0.3953 -12.3378 1.7785 36 1 -0.2406 -13.1863 -0.4434 37 1 0.3543 -11.9132 -2.4647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292302021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:44 Heat of formation + Delta-G solvation = -148.225558 kcal Electronic energy + Delta-G solvation = -20951.784416 eV Core-core repulsion = 17413.822175 eV Total energy + Delta-G solvation = -3537.962241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.99593 -40.98982 -40.23299 -38.19526 -35.63549 -35.34774 -33.13652 -32.64160 -31.54392 -29.53761 -27.51214 -25.04749 -23.70114 -23.31341 -22.45049 -21.17532 -19.09011 -18.86325 -18.05204 -17.74677 -17.54888 -16.88752 -16.73361 -16.57683 -16.33560 -16.05343 -15.76784 -15.19645 -14.91971 -14.62656 -14.45255 -14.20046 -14.12796 -13.47464 -13.40184 -13.23472 -12.97934 -12.83802 -12.44978 -12.35920 -12.17172 -11.93312 -11.65184 -11.43381 -11.28970 -10.77129 -10.58325 -10.16370 -9.99243 -9.68762 -8.18402 -6.32377 0.08579 0.20578 1.42205 1.43729 1.57154 1.67715 2.14448 2.43709 2.59274 3.14628 3.17459 3.30719 3.45978 3.66531 3.75757 3.93317 4.07644 4.13058 4.31943 4.36104 4.49171 4.54749 4.61399 4.71259 4.86107 5.03093 5.07309 5.16185 5.30945 5.37695 5.42977 5.50597 5.62653 5.85159 5.88939 6.17452 6.53494 6.60572 6.86183 7.30088 7.37923 8.94599 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039275 B = 0.002767 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.752289 B =10116.656559 C =10237.801691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.119 4.119 11 C 0.511 3.489 12 O -0.590 6.590 13 N -0.713 5.713 14 C 0.096 3.904 15 C 0.158 3.842 16 H 0.114 0.886 17 O -0.550 6.550 18 C -0.166 4.166 19 C -0.086 4.086 20 C -0.125 4.125 21 C -0.088 4.088 22 C -0.162 4.162 23 C 0.079 3.921 24 F -0.151 7.151 25 H 0.263 0.737 26 H -0.019 1.019 27 H -0.017 1.017 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.418 0.582 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.391 0.609 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.220 -28.494 1.937 29.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.300 3.700 12 O -0.470 6.470 13 N -0.367 5.367 14 C -0.028 4.028 15 C 0.098 3.902 16 H 0.132 0.868 17 O -0.358 6.358 18 C -0.167 4.167 19 C -0.104 4.104 20 C -0.143 4.143 21 C -0.105 4.105 22 C -0.180 4.180 23 C 0.060 3.940 24 F -0.130 7.130 25 H 0.072 0.928 26 H 0.000 1.000 27 H 0.002 0.998 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.242 0.758 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.180 0.820 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.741 -28.310 1.496 28.925 hybrid contribution -0.283 1.104 -0.196 1.157 sum 5.458 -27.206 1.301 27.778 Atomic orbital electron populations 1.70192 1.08318 1.27749 1.51569 1.26157 0.95755 1.04007 0.94653 0.85250 0.79278 0.78004 0.77571 1.17625 1.20651 1.20526 1.21747 0.94017 0.91586 1.50634 0.90587 1.18699 0.93719 0.92485 0.94719 1.21637 0.99324 0.89954 1.04936 1.21375 0.87803 0.86748 0.74099 1.90654 1.16687 1.88405 1.51211 1.45785 1.11053 1.04281 1.75612 1.21974 0.95105 0.83365 1.02353 1.20615 0.91943 0.88336 0.89312 0.86808 1.86629 1.37629 1.95935 1.15603 1.20486 1.03840 0.99165 0.93250 1.21164 0.96404 0.94870 0.97971 1.21626 0.97661 0.95904 0.99087 1.21486 0.97608 1.00228 0.91202 1.21460 1.00470 0.93984 1.02115 1.17889 1.01191 0.92909 0.82004 1.91483 1.90938 1.78684 1.51857 0.92848 1.00029 0.99819 0.87556 0.87836 0.74493 0.92647 0.91205 0.75782 0.82643 0.82149 0.81996 0.83395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.27 13.29 21.45 0.28 -59.98 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.98 44.86 29.54 68.60 2.03 46.89 16 4 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -31.34 9.11 25.60 0.23 -31.11 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.36 4.26 29.85 0.13 2.48 16 10 C -0.12 -4.90 5.64 29.84 0.17 -4.73 16 11 C 0.51 20.44 7.83 87.66 0.69 21.13 16 12 O -0.59 -29.77 15.98 -3.02 -0.05 -29.82 16 13 N -0.71 -20.25 5.50 -463.07 -2.55 -22.79 16 14 C 0.10 2.44 5.29 86.38 0.46 2.90 16 15 C 0.16 2.98 3.02 29.85 0.09 3.07 16 16 H 0.11 2.25 7.79 -2.39 -0.02 2.23 16 17 O -0.55 -8.98 12.94 -148.98 -1.93 -10.90 16 18 C -0.17 -2.93 5.07 -19.82 -0.10 -3.03 16 19 C -0.09 -1.07 9.30 22.26 0.21 -0.86 16 20 C -0.12 -1.20 10.04 22.27 0.22 -0.98 16 21 C -0.09 -0.90 10.04 22.26 0.22 -0.67 16 22 C -0.16 -2.40 10.03 22.31 0.22 -2.17 16 23 C 0.08 1.57 7.24 22.37 0.16 1.73 16 24 F -0.15 -3.58 16.57 44.97 0.75 -2.83 16 25 H 0.26 15.73 8.31 -92.70 -0.77 14.96 16 26 H -0.02 -1.21 8.10 -2.39 -0.02 -1.22 16 27 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 28 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 29 H 0.10 3.78 8.14 -2.38 -0.02 3.76 16 30 H 0.42 9.28 8.47 -92.70 -0.79 8.50 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.39 3.84 7.32 -74.06 -0.54 3.30 16 34 H 0.16 1.11 6.41 -2.91 -0.02 1.09 16 35 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 36 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -81.39 326.46 1.47 -79.92 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -0.22 Total: 11.81 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 3.16 Total: -12.29 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.26 Total: -82.77 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.98 Total: -40.72 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.75 Total: -2.83 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -81.39 1.47 -79.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292302021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.308 kcal (2) G-P(sol) polarization free energy of solvation -81.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds