Wall clock time and date at job start Fri Apr 10 2020 14:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86794 * 119.99739 * 2 1 4 4 H 1.48503 * 109.46940 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47270 * 299.99825 * 3 2 1 6 6 H 1.48500 * 109.47495 * 60.00028 * 3 2 1 7 7 C 1.40225 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00316 * 197.89044 * 7 2 1 9 9 C 1.41117 * 119.99767 * 17.88343 * 7 2 1 10 10 C 1.40891 * 120.10336 * 24.63907 * 9 7 2 11 11 C 1.36312 * 119.89271 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.10429 * 0.25194 * 11 10 9 13 13 C 1.47645 * 119.89399 * 179.74588 * 12 11 10 14 14 O 1.21581 * 119.99995 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00032 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00006 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47308 * 34.99352 * 16 15 13 18 18 C 1.52998 * 109.46717 * 274.99271 * 16 15 13 19 19 O 1.42893 * 109.47345 * 295.00148 * 18 16 15 20 20 C 1.52996 * 109.47045 * 154.99608 * 16 15 13 21 21 C 1.53001 * 109.47003 * 294.99210 * 20 16 15 22 22 F 1.39901 * 109.47145 * 180.02562 * 21 20 16 23 23 C 1.40013 * 120.21080 * 359.48923 * 12 11 10 24 24 C 1.36314 * 120.10584 * 0.51109 * 23 12 11 25 25 H 0.97002 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.05299 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.94616 * 179.97438 * 11 10 9 28 28 H 0.97004 * 119.99826 * 359.97438 * 15 13 12 29 29 H 1.09002 * 109.47261 * 55.00073 * 18 16 15 30 30 H 1.08996 * 109.47078 * 174.99870 * 18 16 15 31 31 H 0.96704 * 114.00157 * 180.02562 * 19 18 16 32 32 H 1.08994 * 109.47129 * 54.99903 * 20 16 15 33 33 H 1.09003 * 109.46711 * 175.00110 * 20 16 15 34 34 H 1.09001 * 109.47403 * 300.00323 * 21 20 16 35 35 H 1.09003 * 109.46652 * 60.00864 * 21 20 16 36 36 H 1.07998 * 119.94670 * 180.25466 * 23 12 11 37 37 H 1.08000 * 120.05717 * 179.72107 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0077 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2879 9 6 1.3532 -2.4071 -0.3742 10 6 0.2243 -2.3593 -1.2159 11 6 -0.4049 -3.5140 -1.5748 12 6 0.0659 -4.7458 -1.1041 13 6 -0.6226 -5.9932 -1.4912 14 8 -1.5968 -5.9498 -2.2172 15 7 -0.1716 -7.1801 -1.0390 16 6 -0.8543 -8.4179 -1.4235 17 1 -1.2252 -8.3262 -2.4444 18 6 -2.0283 -8.6686 -0.4749 19 8 -1.5326 -8.9044 0.8444 20 6 0.1272 -9.5886 -1.3408 21 6 1.2358 -9.3990 -2.3780 22 9 2.1331 -10.4697 -2.3027 23 6 1.1906 -4.7988 -0.2719 24 6 1.8264 -3.6494 0.0924 25 1 -0.4850 0.8400 0.0004 26 1 -0.1424 -1.4092 -1.5754 27 1 -1.2705 -3.4784 -2.2195 28 1 0.6056 -7.2147 -0.4594 29 1 -2.6817 -7.7962 -0.4670 30 1 -2.5893 -9.5397 -0.8134 31 1 -2.2235 -9.0717 1.5001 32 1 0.5652 -9.6257 -0.3434 33 1 -0.4014 -10.5207 -1.5404 34 1 0.7978 -9.3619 -3.3754 35 1 1.7645 -8.4668 -2.1784 36 1 1.5525 -5.7516 0.0854 37 1 2.6911 -3.6908 0.7381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593859248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:15 Heat of formation + Delta-G solvation = -137.278946 kcal Electronic energy + Delta-G solvation = -21422.158284 eV Core-core repulsion = 17884.670724 eV Total energy + Delta-G solvation = -3537.487560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.64005 -39.46286 -37.61816 -36.73289 -34.87254 -33.90455 -31.76260 -30.07245 -29.47144 -28.17516 -25.84917 -23.53088 -22.28468 -21.23716 -20.44146 -19.74074 -17.61708 -17.46971 -16.95740 -16.36979 -15.87759 -15.67867 -15.30683 -14.88344 -14.63760 -14.06314 -13.98410 -13.62444 -13.30344 -13.29803 -12.75566 -12.51347 -12.24970 -12.10796 -11.87270 -11.41424 -11.38104 -11.25251 -10.99971 -10.92326 -10.80013 -10.63848 -10.08139 -10.03452 -9.55714 -9.34574 -9.01789 -8.67650 -7.71122 -7.58067 -7.03448 -4.61408 2.21041 2.89378 2.95180 3.00560 3.02473 3.66673 3.73525 3.82465 4.26810 4.34135 4.55853 4.72888 4.73709 5.04302 5.28383 5.31243 5.42485 5.53663 5.56830 5.70541 5.78397 5.97891 6.01595 6.16756 6.28020 6.79276 6.82072 6.90946 7.05393 7.09261 7.42820 7.56606 7.60840 7.77009 7.86762 8.04381 8.21691 8.42057 8.62043 8.74373 9.02401 9.88403 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027057 B = 0.003602 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.613380 B = 7770.591218 C = 8196.376403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.183 4.183 11 C -0.036 4.036 12 C -0.285 4.285 13 C 0.572 3.428 14 O -0.576 6.576 15 N -0.733 5.733 16 C 0.154 3.846 17 H 0.099 0.901 18 C 0.065 3.935 19 O -0.568 6.568 20 C -0.153 4.153 21 C 0.058 3.942 22 F -0.222 7.222 23 C -0.048 4.048 24 C -0.235 4.235 25 H 0.287 0.713 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.399 0.601 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.376 0.624 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -11.675 -0.360 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.202 4.202 11 C -0.055 4.055 12 C -0.289 4.289 13 C 0.368 3.632 14 O -0.458 6.458 15 N -0.386 5.386 16 C 0.048 3.952 17 H 0.117 0.883 18 C -0.015 4.015 19 O -0.373 6.373 20 C -0.191 4.191 21 C 0.004 3.996 22 F -0.203 7.203 23 C -0.067 4.067 24 C -0.254 4.254 25 H 0.098 0.902 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.235 0.765 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.223 0.777 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.058 -11.425 -1.167 11.533 hybrid contribution 0.051 0.601 0.695 0.920 sum -1.007 -10.825 -0.471 10.882 Atomic orbital electron populations 1.69758 1.07943 1.30043 1.31419 1.26110 0.94798 1.01931 0.91941 0.86174 0.81067 0.80228 0.78893 1.18061 1.19351 1.19661 1.19880 0.98409 0.91228 1.37476 0.89685 1.17796 0.90450 0.92122 0.87149 1.21012 1.00028 0.97010 1.02183 1.20470 0.97101 0.91559 0.96386 1.18884 1.03865 0.91778 1.14409 1.18630 0.82890 0.83413 0.78292 1.90629 1.28376 1.87496 1.39328 1.45951 1.34002 1.05124 1.53529 1.20796 0.91829 0.84167 0.98426 0.88286 1.22639 0.96069 0.99500 0.83251 1.86464 1.37665 1.94374 1.18775 1.22324 0.96950 0.98842 1.00995 1.22054 0.89475 0.87522 1.00598 1.92751 1.70393 1.59327 1.97809 1.20367 0.94206 0.96562 0.95543 1.20671 1.04423 0.92781 1.07558 0.90204 0.86174 0.88228 0.76526 0.92602 0.93305 0.77733 0.89363 0.89783 0.90758 0.90263 0.89267 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.70 10.95 55.56 0.61 -18.09 16 2 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 3 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.44 -10.95 9.04 -37.74 -0.34 -11.29 16 8 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.24 5.58 -106.80 -0.60 2.65 16 10 C -0.18 -4.65 8.64 -39.27 -0.34 -4.99 16 11 C -0.04 -0.87 9.52 -39.61 -0.38 -1.24 16 12 C -0.28 -6.40 5.89 -104.73 -0.62 -7.02 16 13 C 0.57 11.69 7.73 -12.42 -0.10 11.59 16 14 O -0.58 -13.14 15.99 5.29 0.08 -13.05 16 15 N -0.73 -11.58 4.43 -54.81 -0.24 -11.82 16 16 C 0.15 1.99 2.37 -67.93 -0.16 1.83 16 17 H 0.10 1.34 7.58 -51.93 -0.39 0.94 16 18 C 0.06 0.78 6.85 37.16 0.25 1.03 16 19 O -0.57 -6.62 12.83 -35.23 -0.45 -7.08 16 20 C -0.15 -1.63 4.92 -26.73 -0.13 -1.76 16 21 C 0.06 0.64 7.44 37.16 0.28 0.92 16 22 F -0.22 -2.83 17.36 2.25 0.04 -2.79 16 23 C -0.05 -1.01 9.47 -39.61 -0.38 -1.38 16 24 C -0.23 -5.41 9.73 -39.27 -0.38 -5.79 16 25 H 0.29 6.26 8.29 -40.82 -0.34 5.92 16 26 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 27 H 0.10 2.37 7.63 -52.49 -0.40 1.97 16 28 H 0.40 5.87 6.60 -40.82 -0.27 5.60 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.38 2.82 9.12 45.56 0.42 3.24 16 32 H 0.09 1.00 7.73 -51.93 -0.40 0.60 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 36 H 0.09 1.57 6.37 -52.49 -0.33 1.23 16 37 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 320.54 15.07 4.83 4.83 Total: -1.00 -29.23 320.54 -6.91 -36.14 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -3.77 Total: 13.42 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -2.97 Total: -13.82 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.37 Total: -29.91 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.37 Total: -20.13 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.23 -6.91 -36.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593859248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.137 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds