Wall clock time and date at job start Fri Apr 10 2020 14:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86794 * 119.99739 * 2 1 4 4 H 1.48503 * 109.46940 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47270 * 299.99825 * 3 2 1 6 6 H 1.48500 * 109.47495 * 60.00028 * 3 2 1 7 7 C 1.40225 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00316 * 197.89044 * 7 2 1 9 9 C 1.41117 * 119.99767 * 17.88343 * 7 2 1 10 10 C 1.40891 * 120.10336 * 24.63907 * 9 7 2 11 11 C 1.36312 * 119.89271 * 180.02562 * 10 9 7 12 12 C 1.40011 * 120.10429 * 0.25194 * 11 10 9 13 13 C 1.47645 * 119.89399 * 179.74588 * 12 11 10 14 14 O 1.21581 * 119.99995 * 359.97438 * 13 12 11 15 15 N 1.34780 * 120.00032 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00006 * 180.02562 * 15 13 12 17 17 H 1.09000 * 109.47308 * 34.99352 * 16 15 13 18 18 C 1.52998 * 109.46717 * 274.99271 * 16 15 13 19 19 O 1.42893 * 109.47345 * 295.00148 * 18 16 15 20 20 C 1.52996 * 109.47045 * 154.99608 * 16 15 13 21 21 C 1.53001 * 109.47003 * 294.99210 * 20 16 15 22 22 F 1.39901 * 109.47145 * 180.02562 * 21 20 16 23 23 C 1.40013 * 120.21080 * 359.48923 * 12 11 10 24 24 C 1.36314 * 120.10584 * 0.51109 * 23 12 11 25 25 H 0.97002 * 120.00128 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.05299 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.94616 * 179.97438 * 11 10 9 28 28 H 0.97004 * 119.99826 * 359.97438 * 15 13 12 29 29 H 1.09002 * 109.47261 * 55.00073 * 18 16 15 30 30 H 1.08996 * 109.47078 * 174.99870 * 18 16 15 31 31 H 0.96704 * 114.00157 * 180.02562 * 19 18 16 32 32 H 1.08994 * 109.47129 * 54.99903 * 20 16 15 33 33 H 1.09003 * 109.46711 * 175.00110 * 20 16 15 34 34 H 1.09001 * 109.47403 * 300.00323 * 21 20 16 35 35 H 1.09003 * 109.46652 * 60.00864 * 21 20 16 36 36 H 1.07998 * 119.94670 * 180.25466 * 23 12 11 37 37 H 1.08000 * 120.05717 * 179.72107 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8817 2.3964 -1.2125 6 1 1.8817 2.3965 1.2125 7 6 2.0077 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2879 9 6 1.3532 -2.4071 -0.3742 10 6 0.2243 -2.3593 -1.2159 11 6 -0.4049 -3.5140 -1.5748 12 6 0.0659 -4.7458 -1.1041 13 6 -0.6226 -5.9932 -1.4912 14 8 -1.5968 -5.9498 -2.2172 15 7 -0.1716 -7.1801 -1.0390 16 6 -0.8543 -8.4179 -1.4235 17 1 -1.2252 -8.3262 -2.4444 18 6 -2.0283 -8.6686 -0.4749 19 8 -1.5326 -8.9044 0.8444 20 6 0.1272 -9.5886 -1.3408 21 6 1.2358 -9.3990 -2.3780 22 9 2.1331 -10.4697 -2.3027 23 6 1.1906 -4.7988 -0.2719 24 6 1.8264 -3.6494 0.0924 25 1 -0.4850 0.8400 0.0004 26 1 -0.1424 -1.4092 -1.5754 27 1 -1.2705 -3.4784 -2.2195 28 1 0.6056 -7.2147 -0.4594 29 1 -2.6817 -7.7962 -0.4670 30 1 -2.5893 -9.5397 -0.8134 31 1 -2.2235 -9.0717 1.5001 32 1 0.5652 -9.6257 -0.3434 33 1 -0.4014 -10.5207 -1.5404 34 1 0.7978 -9.3619 -3.3754 35 1 1.7645 -8.4668 -2.1784 36 1 1.5525 -5.7516 0.0854 37 1 2.6911 -3.6908 0.7381 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593859248.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:14 Heat of formation + Delta-G solvation = -156.812597 kcal Electronic energy + Delta-G solvation = -21423.005327 eV Core-core repulsion = 17884.670724 eV Total energy + Delta-G solvation = -3538.334603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.57579 -40.96435 -39.16437 -38.07763 -36.00129 -35.68480 -33.09162 -31.83569 -31.18599 -29.25255 -27.58104 -24.56319 -23.81622 -22.89803 -21.79189 -21.28473 -19.36400 -18.67701 -18.30433 -17.44157 -17.12505 -16.81976 -16.70472 -16.10515 -15.85906 -15.73301 -15.31856 -15.05521 -14.89930 -14.46759 -14.31436 -13.99860 -13.69499 -13.45120 -13.28024 -13.07958 -12.82141 -12.64025 -12.40530 -12.29525 -11.89516 -11.76735 -11.66719 -11.35797 -11.12485 -10.99578 -10.65369 -10.04910 -9.56487 -9.40811 -8.79195 -6.48222 0.44827 1.15636 1.37748 1.41932 1.55281 2.11929 2.17621 2.34952 2.79182 3.39294 3.41591 3.69917 3.81321 3.89598 4.17197 4.27865 4.31003 4.34616 4.41153 4.43707 4.58524 4.64224 4.78592 4.94216 4.97887 5.02585 5.19580 5.22241 5.26514 5.58264 5.61330 5.79394 5.96657 6.02165 6.21033 6.56412 6.72283 6.77134 6.87319 6.89737 7.45220 8.16091 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027057 B = 0.003602 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.613380 B = 7770.591218 C = 8196.376403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.034 3.966 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.263 1.263 7 C -0.473 4.473 8 H 0.091 0.909 9 C 0.100 3.900 10 C -0.203 4.203 11 C -0.049 4.049 12 C -0.293 4.293 13 C 0.575 3.425 14 O -0.604 6.604 15 N -0.715 5.715 16 C 0.147 3.853 17 H 0.095 0.905 18 C 0.069 3.931 19 O -0.579 6.579 20 C -0.139 4.139 21 C 0.056 3.944 22 F -0.231 7.231 23 C -0.037 4.037 24 C -0.247 4.247 25 H 0.295 0.705 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.407 0.593 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.395 0.605 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 -13.112 0.260 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.500 4.500 8 H 0.109 0.891 9 C 0.097 3.903 10 C -0.222 4.222 11 C -0.069 4.069 12 C -0.298 4.298 13 C 0.368 3.632 14 O -0.488 6.488 15 N -0.367 5.367 16 C 0.043 3.957 17 H 0.113 0.887 18 C -0.010 4.010 19 O -0.387 6.387 20 C -0.177 4.177 21 C 0.001 3.999 22 F -0.212 7.212 23 C -0.056 4.056 24 C -0.266 4.266 25 H 0.106 0.894 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.244 0.756 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.244 0.756 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.252 -12.916 -0.519 12.929 hybrid contribution -0.263 0.901 0.512 1.070 sum -0.515 -12.015 -0.007 12.026 Atomic orbital electron populations 1.69805 1.09524 1.31483 1.31901 1.27003 0.95452 1.05165 0.90799 0.85057 0.79640 0.75420 0.79082 1.17512 1.18939 1.18786 1.20176 0.98896 0.92128 1.38804 0.89100 1.18150 0.90804 0.93645 0.87678 1.20938 1.01126 0.96712 1.03468 1.20551 0.97115 0.92428 0.96772 1.19200 1.04284 0.92198 1.14083 1.18338 0.82440 0.84133 0.78257 1.90614 1.29525 1.88023 1.40676 1.45794 1.33760 1.04827 1.52283 1.21055 0.92717 0.83361 0.98589 0.88714 1.22525 0.95168 0.99771 0.83539 1.86410 1.38959 1.94348 1.19011 1.22212 0.96274 0.98480 1.00707 1.22132 0.89369 0.86926 1.01469 1.92735 1.70797 1.59766 1.97884 1.20677 0.92981 0.97822 0.94123 1.20933 1.05190 0.92609 1.07909 0.89379 0.87844 0.88913 0.75649 0.95396 0.90023 0.75590 0.89571 0.87588 0.89572 0.90794 0.85198 0.86826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.15 10.95 21.87 0.24 -39.91 16 2 C 0.03 1.63 5.14 85.35 0.44 2.06 16 3 Si 0.99 35.35 29.60 68.60 2.03 37.39 16 4 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 5 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 7 C -0.47 -23.81 9.04 23.46 0.21 -23.60 16 8 H 0.09 4.30 7.91 -2.91 -0.02 4.28 16 9 C 0.10 5.20 5.58 -21.28 -0.12 5.08 16 10 C -0.20 -10.75 8.64 22.47 0.19 -10.55 16 11 C -0.05 -2.47 9.52 22.25 0.21 -2.26 16 12 C -0.29 -13.15 5.89 -19.93 -0.12 -13.27 16 13 C 0.57 23.08 7.73 86.73 0.67 23.75 16 14 O -0.60 -27.59 15.99 -3.97 -0.06 -27.65 16 15 N -0.71 -21.21 4.43 -445.59 -1.97 -23.18 16 16 C 0.15 3.47 2.37 44.99 0.11 3.58 16 17 H 0.09 2.37 7.58 -2.39 -0.02 2.35 16 18 C 0.07 1.49 6.85 71.98 0.49 1.99 16 19 O -0.58 -11.87 12.83 -148.98 -1.91 -13.78 16 20 C -0.14 -2.52 4.92 30.59 0.15 -2.37 16 21 C 0.06 1.09 7.44 71.98 0.54 1.63 16 22 F -0.23 -5.35 17.36 44.97 0.78 -4.57 16 23 C -0.04 -1.53 9.47 22.25 0.21 -1.32 16 24 C -0.25 -11.29 9.73 22.47 0.22 -11.07 16 25 H 0.30 13.17 8.29 -92.71 -0.77 12.40 16 26 H 0.10 5.70 6.15 -2.91 -0.02 5.68 16 27 H 0.09 4.65 7.63 -2.91 -0.02 4.63 16 28 H 0.41 10.85 6.60 -92.71 -0.61 10.24 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.39 4.84 9.12 -74.05 -0.68 4.16 16 32 H 0.09 1.67 7.73 -2.39 -0.02 1.65 16 33 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.52 7.75 -2.39 -0.02 1.50 16 36 H 0.13 4.17 6.37 -2.91 -0.02 4.15 16 37 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -64.32 320.54 2.14 -62.18 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: -0.17 Total: 35.88 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 3.21 Total: -26.35 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -1.73 Total: -63.09 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.97 Total: -41.43 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.78 Total: -4.57 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.39 kcal Total: -64.32 2.14 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593859248.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.629 kcal (2) G-P(sol) polarization free energy of solvation -64.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds