Wall clock time and date at job start Fri Apr 10 2020 14:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00107 * 2 1 4 4 H 1.48500 * 109.47059 * 270.00153 * 3 2 1 5 5 H 1.48497 * 109.47017 * 29.99974 * 3 2 1 6 6 H 1.48498 * 109.47536 * 150.00297 * 3 2 1 7 7 C 1.37883 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46883 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46812 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46887 * 179.97438 * 11 10 9 13 13 C 1.46907 * 111.00001 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.46646 * 324.99831 * 13 12 11 15 15 C 1.50697 * 109.47216 * 84.99821 * 13 12 11 16 16 O 1.20832 * 119.99953 * 0.02562 * 15 13 12 17 17 O 1.34228 * 120.00322 * 180.02562 * 15 13 12 18 18 C 1.50696 * 109.47035 * 205.00046 * 13 12 11 19 19 C 1.38248 * 119.97128 * 139.99775 * 18 13 12 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 13 21 21 C 1.38458 * 119.97492 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38197 * 119.97511 * 359.47283 * 23 21 20 25 25 H 0.96996 * 120.00382 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46997 * 59.99248 * 9 7 2 27 27 H 1.08998 * 109.46623 * 299.99286 * 9 7 2 28 28 H 1.09003 * 109.47479 * 59.99852 * 10 9 7 29 29 H 1.08998 * 109.47017 * 299.99178 * 10 9 7 30 30 H 1.08996 * 109.47225 * 60.00176 * 11 10 9 31 31 H 1.08998 * 109.46938 * 299.99569 * 11 10 9 32 32 H 1.00901 * 111.00332 * 56.04657 * 12 11 10 33 33 H 0.96689 * 117.00426 * 180.02562 * 17 15 13 34 34 H 1.08002 * 119.98915 * 359.97438 * 19 18 13 35 35 H 1.07995 * 120.01604 * 180.02562 * 20 19 18 36 36 H 1.08007 * 120.01064 * 179.75151 * 23 21 20 37 37 H 1.07994 * 119.98821 * 180.29814 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0006 13 6 1.7346 -7.3951 0.0005 14 1 0.8217 -7.3132 0.5904 15 6 1.3857 -7.7773 -1.4148 16 8 1.6896 -7.0489 -2.3297 17 8 0.7373 -8.9269 -1.6591 18 6 2.6273 -8.4506 0.6004 19 6 2.0948 -9.4076 1.4441 20 6 2.9123 -10.3764 1.9944 21 6 4.2654 -10.3880 1.7009 22 9 5.0658 -11.3343 2.2388 23 6 4.7987 -9.4255 0.8603 24 6 3.9781 -8.4612 0.3066 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8533 -5.0451 -0.8886 31 1 0.8540 -5.0446 0.8914 32 1 3.0703 -6.0366 0.7814 33 1 0.5355 -9.1294 -2.5828 34 1 1.0394 -9.3981 1.6732 35 1 2.4961 -11.1241 2.6531 36 1 5.8547 -9.4312 0.6339 37 1 4.3930 -7.7133 -0.3529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739069098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:45 Heat of formation + Delta-G solvation = -119.513987 kcal Electronic energy + Delta-G solvation = -21002.384137 eV Core-core repulsion = 17465.666923 eV Total energy + Delta-G solvation = -3536.717214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.18415 -40.62293 -39.17753 -36.70677 -35.78268 -33.80806 -32.12540 -31.48298 -30.15593 -27.32852 -25.54704 -23.45428 -22.97022 -22.23301 -20.84472 -20.10082 -18.27856 -17.91204 -16.94188 -16.82191 -16.19238 -16.10192 -15.84770 -15.17148 -15.01818 -14.54600 -14.40457 -14.21211 -13.85376 -13.54551 -13.44169 -13.08032 -12.51927 -12.26083 -12.15263 -11.65193 -11.52921 -11.39368 -11.25182 -10.84709 -10.70823 -10.52264 -10.48954 -9.70681 -9.42659 -9.37074 -9.07552 -8.90946 -8.46821 -8.32619 -5.98020 -3.99955 0.71805 0.91858 2.22545 2.82356 3.25764 3.34027 3.39925 3.43462 3.93376 4.13753 4.29084 4.45395 4.50511 4.57688 4.89735 4.97774 5.15392 5.22910 5.37975 5.56461 5.61700 5.70120 5.77678 5.80486 5.90695 6.11344 6.26087 6.45629 6.53510 6.61670 6.70451 7.07786 7.14442 7.38586 7.69787 7.84466 7.93401 8.02244 8.45249 9.07114 9.63940 11.13526 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.003128 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.605808 B = 8950.575899 C = 9634.925671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.058 3.942 12 N -0.668 5.668 13 C 0.143 3.857 14 H 0.091 0.909 15 C 0.479 3.521 16 O -0.480 6.480 17 O -0.521 6.521 18 C -0.105 4.105 19 C -0.066 4.066 20 C -0.156 4.156 21 C 0.103 3.897 22 F -0.140 7.140 23 C -0.155 4.155 24 C -0.065 4.065 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.014 0.986 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.354 0.646 33 H 0.408 0.592 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.219 -23.582 2.740 24.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.070 4.070 12 N -0.302 5.302 13 C 0.031 3.969 14 H 0.109 0.891 15 C 0.318 3.682 16 O -0.365 6.365 17 O -0.333 6.333 18 C -0.106 4.106 19 C -0.085 4.085 20 C -0.175 4.175 21 C 0.084 3.916 22 F -0.119 7.119 23 C -0.174 4.174 24 C -0.083 4.083 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.176 0.824 33 H 0.267 0.733 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.364 -23.168 2.231 23.681 hybrid contribution 0.059 0.608 0.336 0.697 sum 4.423 -22.560 2.567 23.133 Atomic orbital electron populations 1.69962 1.06070 1.26560 1.51048 1.25030 0.94851 0.99277 0.95383 0.86588 0.79823 0.83441 0.78115 1.20661 1.21283 1.19868 1.21249 0.93075 0.91009 1.50326 0.92626 1.19059 0.93998 0.91315 0.97149 1.21605 0.99253 0.92480 1.00958 1.22289 0.93997 0.90430 1.00236 1.60135 1.20476 0.99066 1.50567 1.19746 0.97296 0.90377 0.89450 0.89118 1.23270 0.74399 0.78212 0.92313 1.90762 1.48825 1.50897 1.45972 1.84500 1.71250 1.41018 1.36551 1.19583 0.94211 0.97225 0.99572 1.20910 1.00135 0.92694 0.94740 1.21100 0.91930 1.01304 1.03151 1.17815 0.88725 0.88575 0.96522 1.91507 1.73377 1.62639 1.84376 1.21189 1.01431 0.95589 0.99151 1.21070 0.92397 0.97271 0.97601 0.93044 0.96529 0.96776 0.93488 0.92217 0.91008 0.95164 0.82433 0.73328 0.84531 0.84466 0.84397 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.16 5.41 -26.73 -0.14 -2.31 16 11 C 0.06 0.99 5.38 -3.82 -0.02 0.96 16 12 N -0.67 -9.22 5.23 -109.19 -0.57 -9.79 16 13 C 0.14 1.65 2.73 -70.02 -0.19 1.46 16 14 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 15 C 0.48 6.17 7.48 36.00 0.27 6.44 16 16 O -0.48 -8.08 16.68 -18.76 -0.31 -8.39 16 17 O -0.52 -4.99 13.34 -39.25 -0.52 -5.52 16 18 C -0.11 -1.04 4.64 -104.62 -0.49 -1.52 16 19 C -0.07 -0.55 9.67 -39.59 -0.38 -0.94 16 20 C -0.16 -1.29 10.03 -39.52 -0.40 -1.69 16 21 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 22 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 23 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 24 C -0.07 -0.64 9.00 -39.59 -0.36 -0.99 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 1.33 7.62 -51.93 -0.40 0.93 16 31 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.35 4.35 7.99 -39.29 -0.31 4.03 16 33 H 0.41 2.32 9.10 45.56 0.41 2.74 16 34 H 0.14 0.88 8.04 -52.49 -0.42 0.46 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.15 1.48 7.72 -52.49 -0.40 1.07 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -33.63 328.78 -7.65 -41.29 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.02 Total: 1.38 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.94 Total: -12.92 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.17 Total: -36.27 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.84 Total: -13.91 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.63 -7.65 -41.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.229 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds