Wall clock time and date at job start Fri Apr 10 2020 14:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00107 * 2 1 4 4 H 1.48500 * 109.47059 * 270.00153 * 3 2 1 5 5 H 1.48497 * 109.47017 * 29.99974 * 3 2 1 6 6 H 1.48498 * 109.47536 * 150.00297 * 3 2 1 7 7 C 1.37883 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99993 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46883 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46812 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.46887 * 179.97438 * 11 10 9 13 13 C 1.46907 * 111.00001 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.46646 * 324.99831 * 13 12 11 15 15 C 1.50697 * 109.47216 * 84.99821 * 13 12 11 16 16 O 1.20832 * 119.99953 * 0.02562 * 15 13 12 17 17 O 1.34228 * 120.00322 * 180.02562 * 15 13 12 18 18 C 1.50696 * 109.47035 * 205.00046 * 13 12 11 19 19 C 1.38248 * 119.97128 * 139.99775 * 18 13 12 20 20 C 1.38196 * 120.02483 * 179.97438 * 19 18 13 21 21 C 1.38458 * 119.97492 * 0.02562 * 20 19 18 22 22 F 1.35104 * 120.02786 * 179.97438 * 21 20 19 23 23 C 1.38465 * 119.94675 * 0.24873 * 21 20 19 24 24 C 1.38197 * 119.97511 * 359.47283 * 23 21 20 25 25 H 0.96996 * 120.00382 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.46997 * 59.99248 * 9 7 2 27 27 H 1.08998 * 109.46623 * 299.99286 * 9 7 2 28 28 H 1.09003 * 109.47479 * 59.99852 * 10 9 7 29 29 H 1.08998 * 109.47017 * 299.99178 * 10 9 7 30 30 H 1.08996 * 109.47225 * 60.00176 * 11 10 9 31 31 H 1.08998 * 109.46938 * 299.99569 * 11 10 9 32 32 H 1.00901 * 111.00332 * 56.04657 * 12 11 10 33 33 H 0.96689 * 117.00426 * 180.02562 * 17 15 13 34 34 H 1.08002 * 119.98915 * 359.97438 * 19 18 13 35 35 H 1.07995 * 120.01604 * 180.02562 * 20 19 18 36 36 H 1.08007 * 120.01064 * 179.75151 * 23 21 20 37 37 H 1.07994 * 119.98821 * 180.29814 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4349 -6.1036 0.0006 13 6 1.7346 -7.3951 0.0005 14 1 0.8217 -7.3132 0.5904 15 6 1.3857 -7.7773 -1.4148 16 8 1.6896 -7.0489 -2.3297 17 8 0.7373 -8.9269 -1.6591 18 6 2.6273 -8.4506 0.6004 19 6 2.0948 -9.4076 1.4441 20 6 2.9123 -10.3764 1.9944 21 6 4.2654 -10.3880 1.7009 22 9 5.0658 -11.3343 2.2388 23 6 4.7987 -9.4255 0.8603 24 6 3.9781 -8.4612 0.3066 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6242 -2.5567 0.8904 28 1 2.8720 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 0.8533 -5.0451 -0.8886 31 1 0.8540 -5.0446 0.8914 32 1 3.0703 -6.0366 0.7814 33 1 0.5355 -9.1294 -2.5828 34 1 1.0394 -9.3981 1.6732 35 1 2.4961 -11.1241 2.6531 36 1 5.8547 -9.4312 0.6339 37 1 4.3930 -7.7133 -0.3529 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739069098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:45 Heat of formation + Delta-G solvation = -141.655716 kcal Electronic energy + Delta-G solvation = -21003.344274 eV Core-core repulsion = 17465.666923 eV Total energy + Delta-G solvation = -3537.677351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.91861 -41.56009 -39.96583 -37.82472 -36.87044 -35.59322 -33.75067 -32.16811 -31.48878 -28.61817 -27.08343 -24.59919 -23.95361 -23.37265 -22.04722 -21.53562 -19.19229 -18.68155 -18.48787 -17.84010 -17.54116 -17.01045 -16.59064 -16.53514 -16.31361 -15.99027 -15.45989 -15.37697 -14.62467 -14.50279 -14.44513 -14.24020 -13.93774 -13.73641 -13.31879 -13.17774 -12.80874 -12.70500 -12.51048 -12.37978 -12.26875 -11.98770 -11.65952 -11.53218 -11.38674 -11.12880 -10.54651 -10.08800 -9.67187 -9.57977 -8.19585 -6.30293 -0.00500 0.25607 1.24313 1.40596 1.42190 1.53250 1.96640 2.41494 2.52940 3.13711 3.15933 3.23683 3.45336 3.76448 3.95066 4.06355 4.21513 4.29242 4.33077 4.43182 4.46715 4.70033 4.87370 4.94848 4.98105 5.06976 5.13498 5.20509 5.24404 5.40252 5.52387 5.64242 5.75304 5.81523 5.86408 5.88042 6.26542 6.32185 6.86594 7.05993 7.38812 8.92453 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023591 B = 0.003128 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.605808 B = 8950.575899 C = 9634.925671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.074 3.926 12 N -0.673 5.673 13 C 0.144 3.856 14 H 0.111 0.889 15 C 0.484 3.516 16 O -0.529 6.529 17 O -0.508 6.508 18 C -0.110 4.110 19 C -0.061 4.061 20 C -0.152 4.152 21 C 0.091 3.909 22 F -0.146 7.146 23 C -0.157 4.157 24 C -0.074 4.074 25 H 0.264 0.736 26 H -0.014 1.014 27 H -0.003 1.003 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.364 0.636 33 H 0.426 0.574 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.747 -24.552 3.740 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.308 5.308 13 C 0.033 3.967 14 H 0.128 0.872 15 C 0.325 3.675 16 O -0.417 6.417 17 O -0.322 6.322 18 C -0.111 4.111 19 C -0.079 4.079 20 C -0.170 4.170 21 C 0.072 3.928 22 F -0.125 7.125 23 C -0.176 4.176 24 C -0.092 4.092 25 H 0.072 0.928 26 H 0.005 0.995 27 H 0.015 0.985 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.187 0.813 33 H 0.287 0.713 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.897 -24.184 3.236 24.886 hybrid contribution -0.141 0.800 0.014 0.813 sum 4.756 -23.384 3.250 24.083 Atomic orbital electron populations 1.70091 1.07791 1.27762 1.51795 1.25991 0.95794 1.03394 0.94756 0.85441 0.78747 0.78412 0.78420 1.20011 1.20615 1.18586 1.21707 0.93575 0.92413 1.50381 0.92209 1.18959 0.94415 0.93055 0.94768 1.21339 0.98064 0.92601 1.00885 1.21912 0.93824 0.89836 0.99879 1.59916 1.20170 0.99304 1.51430 1.19794 0.98265 0.89504 0.89173 0.87205 1.23546 0.73476 0.78165 0.92363 1.90753 1.51015 1.52518 1.47422 1.84453 1.70162 1.39309 1.38248 1.19483 0.93862 0.97385 1.00351 1.21133 1.01304 0.91802 0.93706 1.21359 0.91339 1.01473 1.02844 1.18028 0.89337 0.88630 0.96849 1.91494 1.73657 1.62861 1.84493 1.21297 1.02034 0.95305 0.98952 1.21033 0.92704 0.97516 0.97936 0.92775 0.99537 0.98499 0.92244 0.93419 0.92967 0.93939 0.81297 0.71262 0.82202 0.82283 0.83334 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 2 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -31.48 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.78 5.41 30.59 0.17 -3.61 16 11 C 0.07 2.49 5.38 86.30 0.46 2.96 16 12 N -0.67 -18.03 5.23 -499.36 -2.61 -20.64 16 13 C 0.14 3.09 2.73 43.42 0.12 3.21 16 14 H 0.11 1.99 7.66 -2.39 -0.02 1.97 16 15 C 0.48 11.98 7.48 71.24 0.53 12.52 16 16 O -0.53 -17.92 16.68 21.95 0.37 -17.56 16 17 O -0.51 -8.77 13.34 -51.40 -0.69 -9.45 16 18 C -0.11 -1.95 4.64 -19.86 -0.09 -2.04 16 19 C -0.06 -0.84 9.67 22.26 0.22 -0.62 16 20 C -0.15 -2.08 10.03 22.31 0.22 -1.86 16 21 C 0.09 1.54 7.30 22.38 0.16 1.71 16 22 F -0.15 -2.74 17.27 44.97 0.78 -1.96 16 23 C -0.16 -2.65 10.03 22.31 0.22 -2.43 16 24 C -0.07 -1.35 9.00 22.26 0.20 -1.15 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 27 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.97 7.62 -2.39 -0.02 1.95 16 31 H 0.04 1.32 8.06 -2.39 -0.02 1.30 16 32 H 0.36 8.48 7.99 -89.69 -0.72 7.77 16 33 H 0.43 4.11 9.10 -74.06 -0.67 3.43 16 34 H 0.16 1.43 8.04 -2.91 -0.02 1.41 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 36 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.14 2.74 7.72 -2.91 -0.02 2.71 16 Total: -1.00 -73.09 328.78 2.93 -70.16 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -0.29 Total: 10.53 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 3.06 Total: -20.69 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -2.32 Total: -77.90 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.32 Total: -27.01 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -73.09 2.93 -70.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.492 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds