Wall clock time and date at job start Fri Apr 10 2020 14:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00192 * 2 1 4 4 H 1.48494 * 109.47361 * 240.00548 * 3 2 1 5 5 H 1.48503 * 109.46755 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47193 * 119.99965 * 3 2 1 7 7 C 1.37874 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47493 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47450 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99890 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47401 * 34.99821 * 13 12 11 15 15 C 1.50699 * 109.47121 * 274.99849 * 13 12 11 16 16 O 1.20827 * 120.00172 * 0.02562 * 15 13 12 17 17 O 1.34231 * 120.00242 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.46921 * 154.99793 * 13 12 11 19 19 C 1.38247 * 119.97165 * 39.72264 * 18 13 12 20 20 C 1.38203 * 120.02477 * 179.76464 * 19 18 13 21 21 C 1.38465 * 119.96835 * 0.50998 * 20 19 18 22 22 F 1.35100 * 120.02002 * 179.76798 * 21 20 19 23 23 C 1.38450 * 119.95341 * 359.74471 * 21 20 19 24 24 C 1.38200 * 119.97423 * 0.02562 * 23 21 20 25 25 H 0.96996 * 119.99546 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47535 * 60.00481 * 9 7 2 27 27 H 1.09003 * 109.47371 * 299.99825 * 9 7 2 28 28 H 1.09004 * 109.46733 * 59.99628 * 10 9 7 29 29 H 1.08994 * 109.47091 * 300.00493 * 10 9 7 30 30 H 1.09002 * 109.46846 * 59.99840 * 11 10 9 31 31 H 1.09005 * 109.47132 * 300.00585 * 11 10 9 32 32 H 1.00901 * 110.99385 * 303.95419 * 12 11 10 33 33 H 0.96696 * 117.00233 * 180.02562 * 17 15 13 34 34 H 1.07997 * 119.98677 * 0.02562 * 19 18 13 35 35 H 1.07996 * 120.01717 * 180.25898 * 20 19 18 36 36 H 1.08003 * 120.01846 * 179.97438 * 23 21 20 37 37 H 1.08003 * 119.99151 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1037 0.0007 13 6 1.7346 -7.3950 0.0007 14 1 0.8215 -7.3132 -0.5890 15 6 1.3857 -7.7772 1.4161 16 8 1.6889 -7.0485 2.3309 17 8 0.7381 -8.9273 1.6606 18 6 2.6273 -8.4506 -0.5992 19 6 3.9791 -8.4577 -0.3100 20 6 4.7980 -9.4281 -0.8557 21 6 4.2656 -10.3871 -1.7008 22 9 5.0659 -11.3334 -2.2385 23 6 2.9125 -10.3759 -1.9938 24 6 2.0948 -9.4073 -1.4432 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 0.8534 -5.0451 -0.8897 31 1 0.8539 -5.0446 0.8903 32 1 3.0698 -6.0370 -0.7807 33 1 0.5357 -9.1294 2.5842 34 1 4.3947 -7.7071 0.3459 35 1 5.8533 -9.4360 -0.6264 36 1 2.4962 -11.1231 -2.6532 37 1 1.0392 -9.3985 -1.6713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739069100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:48 Heat of formation + Delta-G solvation = -119.462911 kcal Electronic energy + Delta-G solvation = -21002.359637 eV Core-core repulsion = 17465.644638 eV Total energy + Delta-G solvation = -3536.714999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.18493 -40.62288 -39.17794 -36.70722 -35.78298 -33.80754 -32.12429 -31.48253 -30.15464 -27.32873 -25.54739 -23.45467 -22.96898 -22.23206 -20.84418 -20.10023 -18.27863 -17.91124 -16.94021 -16.82169 -16.19020 -16.10416 -15.84694 -15.17159 -15.01837 -14.54630 -14.40553 -14.21462 -13.85336 -13.54574 -13.43924 -13.08157 -12.51905 -12.25159 -12.15301 -11.65254 -11.53208 -11.39321 -11.25022 -10.83326 -10.70274 -10.54300 -10.49289 -9.70411 -9.42628 -9.36781 -9.08600 -8.90971 -8.46959 -8.32225 -5.97814 -3.99865 0.71851 0.91855 2.22576 2.82388 3.25784 3.35478 3.39447 3.42359 3.93435 4.13704 4.29117 4.45411 4.50554 4.57689 4.89786 4.97766 5.15386 5.22909 5.38054 5.56480 5.61706 5.70089 5.77641 5.80497 5.90710 6.11346 6.26044 6.45641 6.53530 6.61622 6.70482 7.07733 7.14446 7.38451 7.69584 7.84521 7.93408 8.02368 8.45303 9.06977 9.63990 11.13698 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.003128 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.849684 B = 8949.913298 C = 9634.515877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.058 3.942 12 N -0.668 5.668 13 C 0.143 3.857 14 H 0.091 0.909 15 C 0.479 3.521 16 O -0.480 6.480 17 O -0.521 6.521 18 C -0.105 4.105 19 C -0.065 4.065 20 C -0.155 4.155 21 C 0.103 3.897 22 F -0.140 7.140 23 C -0.156 4.156 24 C -0.066 4.066 25 H 0.261 0.739 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.354 0.646 33 H 0.408 0.592 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -23.566 -2.735 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.143 4.143 11 C -0.070 4.070 12 N -0.302 5.302 13 C 0.031 3.969 14 H 0.109 0.891 15 C 0.318 3.682 16 O -0.365 6.365 17 O -0.333 6.333 18 C -0.106 4.106 19 C -0.083 4.083 20 C -0.174 4.174 21 C 0.084 3.916 22 F -0.119 7.119 23 C -0.175 4.175 24 C -0.085 4.085 25 H 0.070 0.930 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.176 0.824 33 H 0.267 0.733 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.348 -23.150 -2.221 23.659 hybrid contribution 0.071 0.604 -0.348 0.701 sum 4.419 -22.546 -2.569 23.118 Atomic orbital electron populations 1.69959 1.06067 1.26671 1.50958 1.25028 0.94854 0.99264 0.95367 0.86646 0.79564 0.83092 0.78628 1.20261 1.21335 1.20210 1.21212 0.93042 0.91027 1.50464 0.92676 1.19055 0.93987 0.91292 0.97142 1.21605 0.99259 0.92486 1.00958 1.22290 0.93996 0.90428 1.00244 1.60150 1.20493 0.99068 1.50514 1.19749 0.97299 0.90378 0.89456 0.89117 1.23267 0.74397 0.78216 0.92308 1.90761 1.48820 1.50899 1.45974 1.84503 1.71282 1.40980 1.36557 1.19583 0.94187 0.97243 0.99576 1.21073 0.92399 0.97228 0.97647 1.21189 1.01464 0.95565 0.99141 1.17812 0.88730 0.88616 0.96478 1.91506 1.73375 1.62644 1.84374 1.21099 0.91914 1.01295 1.03178 1.20910 1.00143 0.92720 0.94710 0.92986 0.96788 0.96530 0.92221 0.93484 0.95164 0.91002 0.82444 0.73327 0.83608 0.84398 0.84464 0.84532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.16 5.41 -26.73 -0.14 -2.31 16 11 C 0.06 0.98 5.38 -3.83 -0.02 0.96 16 12 N -0.67 -9.22 5.22 -109.18 -0.57 -9.79 16 13 C 0.14 1.65 2.73 -70.02 -0.19 1.46 16 14 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 15 C 0.48 6.17 7.49 36.01 0.27 6.44 16 16 O -0.48 -8.08 16.68 -18.75 -0.31 -8.40 16 17 O -0.52 -4.99 13.34 -39.26 -0.52 -5.52 16 18 C -0.11 -1.04 4.64 -104.62 -0.49 -1.52 16 19 C -0.07 -0.64 8.99 -39.59 -0.36 -1.00 16 20 C -0.15 -1.41 10.03 -39.51 -0.40 -1.81 16 21 C 0.10 0.97 7.30 -39.42 -0.29 0.68 16 22 F -0.14 -1.42 17.27 2.25 0.04 -1.39 16 23 C -0.16 -1.29 10.03 -39.52 -0.40 -1.69 16 24 C -0.07 -0.56 9.67 -39.59 -0.38 -0.94 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 31 H 0.07 1.33 7.62 -51.93 -0.40 0.93 16 32 H 0.35 4.35 7.98 -39.29 -0.31 4.03 16 33 H 0.41 2.33 9.10 45.56 0.41 2.74 16 34 H 0.15 1.48 7.71 -52.49 -0.40 1.07 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 37 H 0.14 0.88 8.04 -52.48 -0.42 0.46 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -33.62 328.75 -7.65 -41.27 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.01 Total: 1.42 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -2.94 Total: -12.93 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.17 Total: -36.28 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.84 Total: -13.92 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.62 -7.65 -41.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.190 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds