Wall clock time and date at job start Fri Apr 10 2020 14:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00192 * 2 1 4 4 H 1.48494 * 109.47361 * 240.00548 * 3 2 1 5 5 H 1.48503 * 109.46755 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47193 * 119.99965 * 3 2 1 7 7 C 1.37874 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00040 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47255 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47493 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47450 * 180.02562 * 11 10 9 13 13 C 1.46901 * 110.99890 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47401 * 34.99821 * 13 12 11 15 15 C 1.50699 * 109.47121 * 274.99849 * 13 12 11 16 16 O 1.20827 * 120.00172 * 0.02562 * 15 13 12 17 17 O 1.34231 * 120.00242 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.46921 * 154.99793 * 13 12 11 19 19 C 1.38247 * 119.97165 * 39.72264 * 18 13 12 20 20 C 1.38203 * 120.02477 * 179.76464 * 19 18 13 21 21 C 1.38465 * 119.96835 * 0.50998 * 20 19 18 22 22 F 1.35100 * 120.02002 * 179.76798 * 21 20 19 23 23 C 1.38450 * 119.95341 * 359.74471 * 21 20 19 24 24 C 1.38200 * 119.97423 * 0.02562 * 23 21 20 25 25 H 0.96996 * 119.99546 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47535 * 60.00481 * 9 7 2 27 27 H 1.09003 * 109.47371 * 299.99825 * 9 7 2 28 28 H 1.09004 * 109.46733 * 59.99628 * 10 9 7 29 29 H 1.08994 * 109.47091 * 300.00493 * 10 9 7 30 30 H 1.09002 * 109.46846 * 59.99840 * 11 10 9 31 31 H 1.09005 * 109.47132 * 300.00585 * 11 10 9 32 32 H 1.00901 * 110.99385 * 303.95419 * 12 11 10 33 33 H 0.96696 * 117.00233 * 180.02562 * 17 15 13 34 34 H 1.07997 * 119.98677 * 0.02562 * 19 18 13 35 35 H 1.07996 * 120.01717 * 180.25898 * 20 19 18 36 36 H 1.08003 * 120.01846 * 179.97438 * 23 21 20 37 37 H 1.08003 * 119.99151 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 7 2.4349 -6.1037 0.0007 13 6 1.7346 -7.3950 0.0007 14 1 0.8215 -7.3132 -0.5890 15 6 1.3857 -7.7772 1.4161 16 8 1.6889 -7.0485 2.3309 17 8 0.7381 -8.9273 1.6606 18 6 2.6273 -8.4506 -0.5992 19 6 3.9791 -8.4577 -0.3100 20 6 4.7980 -9.4281 -0.8557 21 6 4.2656 -10.3871 -1.7008 22 9 5.0659 -11.3334 -2.2385 23 6 2.9125 -10.3759 -1.9938 24 6 2.0948 -9.4073 -1.4432 25 1 -0.4849 0.8401 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 0.8534 -5.0451 -0.8897 31 1 0.8539 -5.0446 0.8903 32 1 3.0698 -6.0370 -0.7807 33 1 0.5357 -9.1294 2.5842 34 1 4.3947 -7.7071 0.3459 35 1 5.8533 -9.4360 -0.6264 36 1 2.4962 -11.1231 -2.6532 37 1 1.0392 -9.3985 -1.6713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739069100.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:47 Heat of formation + Delta-G solvation = -141.597169 kcal Electronic energy + Delta-G solvation = -21003.319451 eV Core-core repulsion = 17465.644638 eV Total energy + Delta-G solvation = -3537.674812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.91958 -41.56055 -39.96661 -37.82549 -36.87078 -35.59302 -33.75023 -32.16802 -31.48763 -28.61831 -27.08418 -24.60030 -23.95198 -23.37265 -22.04725 -21.53531 -19.19257 -18.68120 -18.48457 -17.83890 -17.54094 -17.01291 -16.59063 -16.53812 -16.31378 -15.99130 -15.46170 -15.37661 -14.62203 -14.50227 -14.44336 -14.23564 -13.93650 -13.74009 -13.31862 -13.17413 -12.81289 -12.68130 -12.51451 -12.37674 -12.29267 -11.98752 -11.66060 -11.52913 -11.38698 -11.13917 -10.53983 -10.08790 -9.67175 -9.58164 -8.19430 -6.30288 -0.00477 0.25584 1.24300 1.40554 1.43985 1.51735 1.96636 2.41609 2.52944 3.13767 3.15851 3.23710 3.45325 3.76429 3.95062 4.06324 4.21489 4.29165 4.33036 4.43179 4.46662 4.69950 4.87340 4.94790 4.98091 5.06944 5.13487 5.20502 5.24362 5.40214 5.52160 5.64212 5.75269 5.81475 5.86386 5.88015 6.26511 6.32025 6.86434 7.05954 7.38822 8.92411 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023586 B = 0.003128 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.849684 B = 8949.913298 C = 9634.515877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.026 3.974 10 C -0.091 4.091 11 C 0.074 3.926 12 N -0.673 5.673 13 C 0.144 3.856 14 H 0.111 0.889 15 C 0.484 3.516 16 O -0.529 6.529 17 O -0.508 6.508 18 C -0.110 4.110 19 C -0.074 4.074 20 C -0.157 4.157 21 C 0.091 3.909 22 F -0.146 7.146 23 C -0.152 4.152 24 C -0.061 4.061 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.014 1.014 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.364 0.636 33 H 0.426 0.574 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -24.535 -3.745 25.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.129 4.129 11 C -0.055 4.055 12 N -0.308 5.308 13 C 0.033 3.967 14 H 0.128 0.872 15 C 0.325 3.675 16 O -0.417 6.417 17 O -0.322 6.322 18 C -0.111 4.111 19 C -0.092 4.092 20 C -0.176 4.176 21 C 0.072 3.928 22 F -0.125 7.125 23 C -0.170 4.170 24 C -0.079 4.079 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.005 0.995 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.187 0.813 33 H 0.287 0.713 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.892 -24.165 -3.236 24.867 hybrid contribution -0.131 0.795 -0.024 0.806 sum 4.761 -23.371 -3.260 24.072 Atomic orbital electron populations 1.70092 1.07794 1.27828 1.51726 1.25992 0.95795 1.03394 0.94728 0.85497 0.78277 0.78053 0.79206 1.18913 1.20800 1.19412 1.21682 0.93584 0.92431 1.50513 0.92196 1.18954 0.94408 0.93040 0.94757 1.21339 0.98067 0.92603 1.00887 1.21913 0.93825 0.89837 0.99883 1.59931 1.20187 0.99304 1.51378 1.19797 0.98270 0.89505 0.89178 0.87203 1.23543 0.73472 0.78169 0.92358 1.90752 1.51012 1.52520 1.47425 1.84456 1.70195 1.39269 1.38255 1.19483 0.93839 0.97404 1.00356 1.21037 0.92704 0.97468 0.97987 1.21298 1.02066 0.95279 0.98946 1.18025 0.89341 0.88672 0.96804 1.91493 1.73655 1.62866 1.84492 1.21358 0.91322 1.01462 1.02873 1.21134 1.01314 0.91828 0.93673 0.92768 0.98515 0.99545 0.93432 0.92226 0.93938 0.92966 0.81305 0.71261 0.84438 0.83334 0.82281 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.40 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.78 5.41 30.59 0.17 -3.62 16 11 C 0.07 2.49 5.38 86.30 0.46 2.96 16 12 N -0.67 -18.04 5.22 -499.35 -2.61 -20.64 16 13 C 0.14 3.09 2.73 43.42 0.12 3.21 16 14 H 0.11 1.99 7.66 -2.39 -0.02 1.97 16 15 C 0.48 11.99 7.49 71.24 0.53 12.52 16 16 O -0.53 -17.93 16.68 21.96 0.37 -17.56 16 17 O -0.51 -8.77 13.34 -51.42 -0.69 -9.46 16 18 C -0.11 -1.95 4.64 -19.86 -0.09 -2.04 16 19 C -0.07 -1.36 8.99 22.26 0.20 -1.16 16 20 C -0.16 -2.65 10.03 22.32 0.22 -2.43 16 21 C 0.09 1.54 7.30 22.37 0.16 1.71 16 22 F -0.15 -2.74 17.27 44.97 0.78 -1.96 16 23 C -0.15 -2.08 10.03 22.31 0.22 -1.86 16 24 C -0.06 -0.84 9.67 22.26 0.22 -0.63 16 25 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 26 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.04 1.32 8.06 -2.39 -0.02 1.30 16 31 H 0.05 1.97 7.62 -2.38 -0.02 1.95 16 32 H 0.36 8.48 7.98 -89.69 -0.72 7.76 16 33 H 0.43 4.11 9.10 -74.06 -0.67 3.44 16 34 H 0.14 2.74 7.71 -2.91 -0.02 2.72 16 35 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.16 1.43 8.04 -2.91 -0.02 1.41 16 Total: -1.00 -73.10 328.75 2.93 -70.17 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -0.29 Total: 10.66 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 3.06 Total: -20.75 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -2.32 Total: -77.94 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.32 Total: -27.02 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.78 Total: -1.96 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -73.10 2.93 -70.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739069100.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.431 kcal (2) G-P(sol) polarization free energy of solvation -73.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds