Wall clock time and date at job start Fri Apr 10 2020 14:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30894 * 1 3 3 Si 1.86805 * 119.99931 * 2 1 4 4 H 1.48499 * 109.46895 * 239.99995 * 3 2 1 5 5 H 1.48491 * 109.47116 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46925 * 120.00631 * 3 2 1 7 7 C 1.39896 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00268 * 198.95936 * 7 2 1 9 9 C 1.41006 * 119.99585 * 18.96296 * 7 2 1 10 10 C 1.40742 * 120.31398 * 24.22533 * 9 7 2 11 11 C 1.36420 * 119.95692 * 179.97438 * 10 9 7 12 12 C 1.38941 * 120.60840 * 0.02562 * 11 10 9 13 13 C 1.38098 * 120.63712 * 359.97438 * 12 11 10 14 14 C 1.38832 * 120.02062 * 0.02562 * 13 12 11 15 15 N 1.38626 * 120.30048 * 180.02562 * 14 13 12 16 16 C 1.39765 * 120.00321 * 256.08352 * 15 14 13 17 17 C 1.38969 * 120.19845 * 5.46355 * 16 15 14 18 18 C 1.37839 * 120.26463 * 179.97438 * 17 16 15 19 19 C 1.39315 * 120.34571 * 0.56866 * 18 17 16 20 20 C 1.38909 * 119.01183 * 359.39613 * 19 18 17 21 21 C 1.37670 * 120.85849 * 0.42468 * 20 19 18 22 22 C 1.51654 * 107.04878 * 180.68814 * 20 19 18 23 23 C 1.54702 * 101.92940 * 15.48874 * 22 20 19 24 24 O 1.36244 * 129.78698 * 179.08779 * 19 18 17 25 25 H 0.97005 * 119.99526 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.02106 * 0.25306 * 10 9 7 27 27 H 1.07993 * 119.69966 * 179.97438 * 11 10 9 28 28 H 1.08001 * 119.68211 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.98877 * 180.02562 * 13 12 11 30 30 H 0.97006 * 119.99963 * 76.08320 * 15 14 13 31 31 H 1.07997 * 119.86734 * 0.17875 * 17 16 15 32 32 H 1.08004 * 119.82579 * 180.29807 * 18 17 16 33 33 H 1.08005 * 120.04393 * 179.76934 * 21 20 19 34 34 H 1.09000 * 110.94307 * 133.64672 * 22 20 19 35 35 H 1.08997 * 110.94036 * 257.29947 * 22 20 19 36 36 H 1.09001 * 110.74780 * 92.98523 * 23 22 20 37 37 H 1.08998 * 110.75127 * 216.14904 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7464 0.0006 6 1 3.0968 1.6964 1.2125 7 6 2.0084 -1.2115 -0.0005 8 1 3.0444 -1.2371 0.3033 9 6 1.3607 -2.3993 -0.3979 10 6 0.2412 -2.3473 -1.2493 11 6 -0.3795 -3.5011 -1.6296 12 6 0.0825 -4.7332 -1.1836 13 6 1.1788 -4.8131 -0.3476 14 6 1.8305 -3.6555 0.0558 15 7 2.9318 -3.7290 0.8945 16 6 2.8028 -3.4036 2.2476 17 6 1.5524 -3.1159 2.7813 18 6 1.4235 -2.7954 4.1157 19 6 2.5462 -2.7452 4.9390 20 6 3.7922 -3.0350 4.3977 21 6 3.9256 -3.3593 3.0664 22 6 4.8036 -2.9171 5.5216 23 6 3.8941 -2.9300 6.7729 24 8 2.6436 -2.4376 6.2627 25 1 -0.4850 0.8401 0.0004 26 1 -0.1234 -1.3950 -1.6049 27 1 -1.2384 -3.4563 -2.2827 28 1 -0.4206 -5.6371 -1.4937 29 1 1.5293 -5.7763 -0.0075 30 1 3.7921 -4.0062 0.5422 31 1 0.6776 -3.1468 2.1487 32 1 0.4476 -2.5777 4.5240 33 1 4.9013 -3.5787 2.6584 34 1 5.4832 -3.7693 5.5251 35 1 5.3567 -1.9805 5.4512 36 1 3.7817 -3.9435 7.1581 37 1 4.2878 -2.2672 7.5434 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001174012772.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:23 Heat of formation + Delta-G solvation = 18.813441 kcal Electronic energy + Delta-G solvation = -21295.074087 eV Core-core repulsion = 18195.124425 eV Total energy + Delta-G solvation = -3099.949661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47609 -38.46464 -36.75652 -33.90700 -33.64003 -32.16534 -29.70341 -29.37282 -28.50413 -27.00750 -25.06661 -23.06536 -21.56618 -21.45519 -20.99494 -19.67156 -17.33871 -16.83610 -16.57704 -16.34713 -15.73826 -15.37567 -14.92990 -14.15275 -13.80129 -13.53614 -13.00740 -12.83588 -12.67745 -12.57826 -12.46137 -12.14228 -11.83212 -11.66247 -11.43707 -11.24008 -11.12497 -10.95588 -10.82174 -10.50472 -10.17645 -9.87522 -9.69445 -9.21322 -8.76113 -8.25139 -7.50776 -7.47671 -6.87600 -6.29940 -4.41210 1.96561 2.21027 2.70936 2.89043 3.03671 3.06943 3.20480 3.76749 3.89004 4.37892 4.48165 4.57268 4.77525 4.99234 5.16353 5.40405 5.55976 5.60098 5.67990 5.88937 5.99285 6.09061 6.16954 6.31528 6.35193 6.49458 6.61271 6.70521 6.98767 6.99539 7.10217 7.12923 7.23186 7.29214 7.41184 7.66240 7.78455 7.88117 8.03229 8.18684 8.36561 8.54737 8.70733 8.79669 9.04186 10.07906 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.006546 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.434026 B = 4276.374662 C = 5429.601509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.438 4.438 8 H 0.078 0.922 9 C 0.114 3.886 10 C -0.158 4.158 11 C -0.102 4.102 12 C -0.243 4.243 13 C -0.084 4.084 14 C -0.005 4.005 15 N -0.665 5.665 16 C 0.222 3.778 17 C -0.128 4.128 18 C -0.090 4.090 19 C 0.023 3.977 20 C -0.135 4.135 21 C -0.164 4.164 22 C -0.107 4.107 23 C 0.054 3.946 24 O -0.314 6.314 25 H 0.283 0.717 26 H 0.118 0.882 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.388 0.612 31 H 0.135 0.865 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.041 -3.456 6.476 9.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.467 4.467 8 H 0.096 0.904 9 C 0.110 3.890 10 C -0.178 4.178 11 C -0.121 4.121 12 C -0.263 4.263 13 C -0.104 4.104 14 C -0.099 4.099 15 N -0.287 5.287 16 C 0.118 3.882 17 C -0.150 4.150 18 C -0.109 4.109 19 C -0.023 4.023 20 C -0.137 4.137 21 C -0.188 4.188 22 C -0.144 4.144 23 C -0.021 4.021 24 O -0.229 6.229 25 H 0.094 0.906 26 H 0.135 0.865 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.223 0.777 31 H 0.153 0.847 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.514 -3.154 6.542 9.118 hybrid contribution 0.796 0.704 -0.166 1.076 sum 6.310 -2.450 6.376 9.299 Atomic orbital electron populations 1.69842 1.07561 1.29572 1.33712 1.25919 0.94679 1.01382 0.92071 0.86426 0.80375 0.80355 0.80097 1.18813 1.20227 1.18827 1.19376 0.98589 0.90992 1.37729 0.90351 1.17802 0.91102 0.91525 0.88564 1.20992 0.99145 0.97122 1.00549 1.20461 0.98654 0.93291 0.99669 1.20191 1.01685 0.96139 1.08294 1.20747 0.95490 0.95972 0.98205 1.17247 0.96558 0.92883 1.03168 1.41076 1.10227 1.73351 1.04052 1.17716 0.92807 0.93212 0.84450 1.20499 0.97284 1.03567 0.93649 1.19971 0.95947 1.02458 0.92516 1.19182 0.94436 1.04855 0.83789 1.20233 0.93776 1.05122 0.94530 1.19529 0.97165 1.09992 0.92071 1.21710 0.97427 1.02996 0.92283 1.23631 0.82605 0.99609 0.96290 1.86763 1.39278 1.75225 1.21633 0.90647 0.86453 0.89477 0.89431 0.89307 0.77730 0.84682 0.86388 0.86834 0.89889 0.89796 0.91480 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.52 11.01 55.55 0.61 -18.91 16 2 C 0.08 1.93 5.11 -17.33 -0.09 1.84 16 3 Si 0.90 18.71 29.60 -169.99 -5.03 13.67 16 4 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.44 -11.07 8.30 -37.91 -0.31 -11.38 16 8 H 0.08 1.99 7.59 -52.49 -0.40 1.59 16 9 C 0.11 2.85 5.18 -106.63 -0.55 2.30 16 10 C -0.16 -3.91 8.64 -39.29 -0.34 -4.25 16 11 C -0.10 -2.30 9.96 -39.98 -0.40 -2.70 16 12 C -0.24 -5.23 10.03 -39.37 -0.40 -5.62 16 13 C -0.08 -1.82 9.96 -39.41 -0.39 -2.21 16 14 C 0.00 -0.11 4.55 -83.30 -0.38 -0.49 16 15 N -0.67 -13.36 4.69 -7.99 -0.04 -13.40 16 16 C 0.22 4.47 6.18 -83.68 -0.52 3.95 16 17 C -0.13 -2.72 9.19 -39.46 -0.36 -3.08 16 18 C -0.09 -1.77 10.05 -39.33 -0.40 -2.17 16 19 C 0.02 0.43 7.04 -38.93 -0.27 0.15 16 20 C -0.14 -2.33 6.26 -104.11 -0.65 -2.99 16 21 C -0.16 -2.94 9.89 -39.50 -0.39 -3.33 16 22 C -0.11 -1.38 7.12 -26.52 -0.19 -1.57 16 23 C 0.05 0.67 8.01 38.05 0.30 0.98 16 24 O -0.31 -5.42 11.11 -20.52 -0.23 -5.65 16 25 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 26 H 0.12 3.00 6.19 -52.49 -0.32 2.68 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 28 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.39 6.83 8.84 -40.82 -0.36 6.47 16 31 H 0.14 3.19 6.80 -52.49 -0.36 2.83 16 32 H 0.12 2.16 8.06 -52.48 -0.42 1.73 16 33 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -27.25 313.78 -9.67 -36.92 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -4.38 Total: 13.20 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -5.34 Total: -30.57 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.57 Total: -32.30 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.23 Total: -5.65 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.25 -9.67 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001174012772.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.733 kcal (2) G-P(sol) polarization free energy of solvation -27.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds