Wall clock time and date at job start Fri Apr 10 2020 14:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86802 * 119.99928 * 2 1 4 4 H 1.48507 * 109.46822 * 269.99987 * 3 2 1 5 5 H 1.48499 * 109.47153 * 29.99263 * 3 2 1 6 6 H 1.48497 * 109.47360 * 149.99874 * 3 2 1 7 7 C 1.39929 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00027 * 192.59133 * 7 2 1 9 9 C 1.41151 * 119.99961 * 12.58508 * 7 2 1 10 10 C 1.40726 * 120.29166 * 26.54953 * 9 7 2 11 11 C 1.36487 * 119.93111 * 180.27669 * 10 9 7 12 12 C 1.38814 * 120.53803 * 359.76084 * 11 10 9 13 13 C 1.38308 * 120.59331 * 359.97438 * 12 11 10 14 14 C 1.38441 * 120.05047 * 0.02562 * 13 12 11 15 15 O 1.35638 * 120.26733 * 179.97438 * 14 13 12 16 16 C 1.42893 * 116.99905 * 4.96880 * 15 14 13 17 17 H 1.09003 * 110.26099 * 37.93083 * 16 15 14 18 18 C 1.54346 * 110.37734 * 160.03714 * 16 15 14 19 19 C 1.54364 * 102.38717 * 92.63159 * 18 16 15 20 20 C 1.51227 * 105.12221 * 26.29307 * 19 18 16 21 21 C 1.38739 * 130.69121 * 162.82478 * 20 19 18 22 22 C 1.38578 * 118.55519 * 180.02562 * 21 20 19 23 23 C 1.38227 * 118.98910 * 0.02562 * 22 21 20 24 24 N 1.31686 * 120.80398 * 359.97438 * 23 22 21 25 25 C 1.32301 * 122.02924 * 359.97438 * 24 23 22 26 26 H 0.97002 * 120.00622 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.03109 * 0.03058 * 10 9 7 28 28 H 1.08003 * 119.73412 * 179.73923 * 11 10 9 29 29 H 1.08003 * 119.70487 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.97400 * 180.02562 * 13 12 11 31 31 H 1.08999 * 110.82063 * 210.85983 * 18 16 15 32 32 H 1.08999 * 110.82071 * 334.20895 * 18 16 15 33 33 H 1.09000 * 110.30968 * 267.38218 * 19 18 16 34 34 H 1.09007 * 110.31427 * 145.20464 * 19 18 16 35 35 H 1.07999 * 120.72617 * 0.07840 * 21 20 19 36 36 H 1.07996 * 120.50656 * 180.02562 * 22 21 20 37 37 H 1.08007 * 119.60039 * 179.71552 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0464 -1.4002 5 1 1.4400 2.6527 0.6999 6 1 3.5401 1.4403 0.7000 7 6 2.0083 -1.2118 0.0005 8 1 3.0689 -1.2230 0.2045 9 6 1.3280 -2.4197 -0.2653 10 6 0.1583 -2.4182 -1.0477 11 6 -0.4968 -3.5896 -1.2954 12 6 -0.0163 -4.7880 -0.7855 13 6 1.1342 -4.8156 -0.0184 14 6 1.8181 -3.6417 0.2481 15 8 2.9466 -3.6637 1.0003 16 6 3.4371 -4.9459 1.3968 17 1 3.3025 -5.6673 0.5908 18 6 4.9270 -4.8535 1.7893 19 6 4.8538 -4.6114 3.3121 20 6 3.5407 -5.2231 3.7462 21 6 3.0847 -5.5870 5.0049 22 6 1.8172 -6.1360 5.1171 23 6 1.0554 -6.3015 3.9756 24 7 1.5208 -5.9444 2.7966 25 6 2.7246 -5.4162 2.6481 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2228 -1.4904 -1.4484 28 1 -1.3966 -3.5842 -1.8928 29 1 -0.5457 -5.7070 -0.9895 30 1 1.4994 -5.7536 0.3731 31 1 5.4441 -5.7876 1.5698 32 1 5.4097 -4.0172 1.2836 33 1 4.8625 -3.5426 3.5261 34 1 5.6857 -5.1055 3.8142 35 1 3.7036 -5.4448 5.8785 36 1 1.4306 -6.4301 6.0816 37 1 0.0680 -6.7326 4.0511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:32 Heat of formation + Delta-G solvation = 23.620028 kcal Electronic energy + Delta-G solvation = -21463.160689 eV Core-core repulsion = 18363.419457 eV Total energy + Delta-G solvation = -3099.741232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65496 -38.44733 -36.55517 -34.82294 -33.47863 -32.26705 -29.62023 -29.20689 -28.36361 -26.94585 -25.00223 -23.37776 -21.90281 -21.46672 -20.52959 -19.79948 -17.48448 -16.86604 -16.49640 -15.98307 -15.34372 -15.05165 -14.56704 -14.19479 -13.98489 -13.72842 -13.25989 -13.07831 -12.78263 -12.49438 -12.46022 -12.10743 -11.65862 -11.57114 -11.27739 -11.18217 -11.05387 -10.84237 -10.55936 -10.41311 -10.01601 -9.63209 -9.57419 -9.32190 -9.10900 -8.96029 -8.58521 -7.29976 -6.89612 -6.55769 -4.16084 1.24441 1.46057 2.85682 3.13068 3.14830 3.18251 3.29509 3.84602 4.03771 4.12853 4.42429 4.63515 4.77923 4.86296 5.02900 5.06372 5.18208 5.34124 5.53353 5.68693 5.72551 5.83513 5.88531 5.93514 6.09830 6.13956 6.27386 6.34025 6.38773 6.51635 6.60106 6.86103 7.09032 7.22854 7.43704 7.52924 7.87036 7.91046 8.20644 8.26651 8.34162 8.50850 8.81334 8.97953 9.17858 10.35066 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.006087 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.524077 B = 4598.700178 C = 5344.559831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.447 4.447 8 H 0.079 0.921 9 C 0.098 3.902 10 C -0.145 4.145 11 C -0.129 4.129 12 C -0.211 4.211 13 C -0.155 4.155 14 C 0.003 3.997 15 O -0.287 6.287 16 C 0.134 3.866 17 H 0.079 0.921 18 C -0.112 4.112 19 C -0.076 4.076 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.174 4.174 23 C 0.097 3.903 24 N -0.454 5.454 25 C 0.104 3.896 26 H 0.277 0.723 27 H 0.126 0.874 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.020 -8.525 7.419 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.477 4.477 8 H 0.097 0.903 9 C 0.095 3.905 10 C -0.165 4.165 11 C -0.147 4.147 12 C -0.231 4.231 13 C -0.174 4.174 14 C -0.041 4.041 15 O -0.201 6.201 16 C 0.075 3.925 17 H 0.097 0.903 18 C -0.149 4.149 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.098 4.098 22 C -0.194 4.194 23 C -0.061 4.061 24 N -0.163 5.163 25 C -0.034 4.034 26 H 0.088 0.912 27 H 0.144 0.856 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.407 -8.295 6.751 12.467 hybrid contribution 0.386 0.617 1.022 1.254 sum 6.793 -7.678 7.773 12.865 Atomic orbital electron populations 1.69824 1.07379 1.28713 1.37363 1.25866 0.94767 1.01080 0.92762 0.86296 0.80400 0.80768 0.79112 1.19431 1.20499 1.18723 1.19388 0.96511 0.90223 1.41609 0.90277 1.17061 0.92701 0.89825 0.90872 1.20934 0.97651 0.97103 1.00805 1.20406 0.99206 0.93493 1.01619 1.20159 0.99413 0.96380 1.07118 1.20711 0.98015 0.95978 1.02654 1.19204 0.90011 0.95011 0.99880 1.86069 1.41101 1.25629 1.67320 1.21462 0.91709 0.87296 0.91986 0.90304 1.22336 0.93713 1.03523 0.95377 1.20966 0.93291 1.01381 0.95669 1.21466 0.98768 0.99621 0.94277 1.20987 0.95764 0.96729 0.96368 1.22039 0.95329 1.01840 1.00211 1.22682 0.99530 0.96563 0.87318 1.66975 1.13237 1.09098 1.27001 1.22528 0.89858 0.94043 0.96991 0.91192 0.85624 0.89540 0.89526 0.87676 0.89584 0.88491 0.89268 0.90480 0.85308 0.84897 0.82857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.77 10.79 55.55 0.60 -21.17 16 2 C 0.07 1.85 5.23 -17.33 -0.09 1.76 16 3 Si 0.91 19.58 29.58 -169.99 -5.03 14.55 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.45 -12.46 8.72 -37.84 -0.33 -12.79 16 8 H 0.08 2.17 7.65 -52.48 -0.40 1.76 16 9 C 0.10 2.75 5.58 -106.68 -0.60 2.16 16 10 C -0.15 -3.96 8.62 -39.27 -0.34 -4.30 16 11 C -0.13 -3.20 9.97 -40.00 -0.40 -3.60 16 12 C -0.21 -5.07 10.04 -39.34 -0.39 -5.46 16 13 C -0.15 -3.75 8.36 -39.48 -0.33 -4.08 16 14 C 0.00 0.07 6.64 -38.33 -0.25 -0.18 16 15 O -0.29 -6.76 9.17 -18.61 -0.17 -6.93 16 16 C 0.13 2.48 2.77 -26.80 -0.07 2.40 16 17 H 0.08 1.44 6.53 -51.93 -0.34 1.10 16 18 C -0.11 -1.52 6.81 -25.31 -0.17 -1.69 16 19 C -0.08 -0.97 6.77 -26.91 -0.18 -1.15 16 20 C -0.14 -2.13 6.16 -104.20 -0.64 -2.78 16 21 C -0.07 -0.95 10.17 -39.27 -0.40 -1.35 16 22 C -0.17 -2.22 10.12 -39.46 -0.40 -2.61 16 23 C 0.10 1.47 11.18 -17.62 -0.20 1.28 16 24 N -0.45 -8.62 9.01 -9.19 -0.08 -8.70 16 25 C 0.10 1.91 6.47 -82.03 -0.53 1.38 16 26 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 27 H 0.13 3.50 6.11 -52.48 -0.32 3.18 16 28 H 0.09 1.92 8.06 -52.48 -0.42 1.50 16 29 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 30 H 0.11 2.36 5.09 -52.49 -0.27 2.09 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 309.96 15.07 4.67 4.67 Total: -1.00 -31.80 309.96 -9.61 -41.41 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.27 Total: 7.19 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -5.33 Total: -31.01 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: 0.52 Total: -29.88 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.17 Total: -6.93 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.80 -9.61 -41.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.027 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds