Wall clock time and date at job start Fri Apr 10 2020 14:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30862 * 1 3 3 Si 1.86802 * 119.99928 * 2 1 4 4 H 1.48507 * 109.46822 * 269.99987 * 3 2 1 5 5 H 1.48499 * 109.47153 * 29.99263 * 3 2 1 6 6 H 1.48497 * 109.47360 * 149.99874 * 3 2 1 7 7 C 1.39929 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00027 * 192.59133 * 7 2 1 9 9 C 1.41151 * 119.99961 * 12.58508 * 7 2 1 10 10 C 1.40726 * 120.29166 * 26.54953 * 9 7 2 11 11 C 1.36487 * 119.93111 * 180.27669 * 10 9 7 12 12 C 1.38814 * 120.53803 * 359.76084 * 11 10 9 13 13 C 1.38308 * 120.59331 * 359.97438 * 12 11 10 14 14 C 1.38441 * 120.05047 * 0.02562 * 13 12 11 15 15 O 1.35638 * 120.26733 * 179.97438 * 14 13 12 16 16 C 1.42893 * 116.99905 * 4.96880 * 15 14 13 17 17 H 1.09003 * 110.26099 * 37.93083 * 16 15 14 18 18 C 1.54346 * 110.37734 * 160.03714 * 16 15 14 19 19 C 1.54364 * 102.38717 * 92.63159 * 18 16 15 20 20 C 1.51227 * 105.12221 * 26.29307 * 19 18 16 21 21 C 1.38739 * 130.69121 * 162.82478 * 20 19 18 22 22 C 1.38578 * 118.55519 * 180.02562 * 21 20 19 23 23 C 1.38227 * 118.98910 * 0.02562 * 22 21 20 24 24 N 1.31686 * 120.80398 * 359.97438 * 23 22 21 25 25 C 1.32301 * 122.02924 * 359.97438 * 24 23 22 26 26 H 0.97002 * 120.00622 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.03109 * 0.03058 * 10 9 7 28 28 H 1.08003 * 119.73412 * 179.73923 * 11 10 9 29 29 H 1.08003 * 119.70487 * 179.97438 * 12 11 10 30 30 H 1.08001 * 119.97400 * 180.02562 * 13 12 11 31 31 H 1.08999 * 110.82063 * 210.85983 * 18 16 15 32 32 H 1.08999 * 110.82071 * 334.20895 * 18 16 15 33 33 H 1.09000 * 110.30968 * 267.38218 * 19 18 16 34 34 H 1.09007 * 110.31427 * 145.20464 * 19 18 16 35 35 H 1.07999 * 120.72617 * 0.07840 * 21 20 19 36 36 H 1.07996 * 120.50656 * 180.02562 * 22 21 20 37 37 H 1.08007 * 119.60039 * 179.71552 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0464 -1.4002 5 1 1.4400 2.6527 0.6999 6 1 3.5401 1.4403 0.7000 7 6 2.0083 -1.2118 0.0005 8 1 3.0689 -1.2230 0.2045 9 6 1.3280 -2.4197 -0.2653 10 6 0.1583 -2.4182 -1.0477 11 6 -0.4968 -3.5896 -1.2954 12 6 -0.0163 -4.7880 -0.7855 13 6 1.1342 -4.8156 -0.0184 14 6 1.8181 -3.6417 0.2481 15 8 2.9466 -3.6637 1.0003 16 6 3.4371 -4.9459 1.3968 17 1 3.3025 -5.6673 0.5908 18 6 4.9270 -4.8535 1.7893 19 6 4.8538 -4.6114 3.3121 20 6 3.5407 -5.2231 3.7462 21 6 3.0847 -5.5870 5.0049 22 6 1.8172 -6.1360 5.1171 23 6 1.0554 -6.3015 3.9756 24 7 1.5208 -5.9444 2.7966 25 6 2.7246 -5.4162 2.6481 26 1 -0.4851 0.8400 -0.0004 27 1 -0.2228 -1.4904 -1.4484 28 1 -1.3966 -3.5842 -1.8928 29 1 -0.5457 -5.7070 -0.9895 30 1 1.4994 -5.7536 0.3731 31 1 5.4441 -5.7876 1.5698 32 1 5.4097 -4.0172 1.2836 33 1 4.8625 -3.5426 3.5261 34 1 5.6857 -5.1055 3.8142 35 1 3.7036 -5.4448 5.8785 36 1 1.4306 -6.4301 6.0816 37 1 0.0680 -6.7326 4.0511 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:32 Heat of formation + Delta-G solvation = 5.902942 kcal Electronic energy + Delta-G solvation = -21463.928959 eV Core-core repulsion = 18363.419457 eV Total energy + Delta-G solvation = -3100.509503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88912 -40.15161 -38.19601 -36.21867 -35.46149 -33.41965 -31.58038 -30.61124 -30.00086 -28.24591 -27.00782 -24.48103 -23.47303 -22.83680 -22.30280 -21.29575 -19.37893 -18.58069 -17.83005 -17.21188 -17.05675 -16.36975 -16.00458 -15.91917 -15.56575 -15.07199 -14.73449 -14.47268 -14.32857 -14.19558 -13.79027 -13.63101 -13.30109 -12.94556 -12.79805 -12.69688 -12.68201 -12.30407 -12.16725 -12.02300 -11.72555 -11.57305 -11.22182 -11.06198 -10.66937 -10.17463 -9.75219 -9.32874 -8.85410 -8.51584 -6.23127 0.10236 0.37560 0.95189 1.14245 1.36797 1.50259 1.52241 2.23364 2.53627 2.78455 2.97663 3.05669 3.49341 3.71371 3.77218 4.00075 4.05064 4.09108 4.32611 4.42078 4.46970 4.53235 4.58399 4.65318 4.72354 4.84840 4.92676 5.02657 5.11269 5.13322 5.21668 5.23877 5.31165 5.47134 5.52987 5.80178 5.88934 5.93654 6.18698 6.33179 6.53657 6.80721 6.94680 7.09815 7.23052 8.41059 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.006087 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.524077 B = 4598.700178 C = 5344.559831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.028 3.972 3 Si 0.984 3.016 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.481 4.481 8 H 0.070 0.930 9 C 0.058 3.942 10 C -0.167 4.167 11 C -0.136 4.136 12 C -0.209 4.209 13 C -0.157 4.157 14 C 0.000 4.000 15 O -0.309 6.309 16 C 0.120 3.880 17 H 0.069 0.931 18 C -0.104 4.104 19 C -0.071 4.071 20 C -0.144 4.144 21 C -0.073 4.073 22 C -0.159 4.159 23 C 0.073 3.927 24 N -0.499 5.499 25 C 0.061 3.939 26 H 0.285 0.715 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -9.186 9.473 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.184 4.184 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.511 4.511 8 H 0.088 0.912 9 C 0.056 3.944 10 C -0.187 4.187 11 C -0.154 4.154 12 C -0.229 4.229 13 C -0.176 4.176 14 C -0.044 4.044 15 O -0.223 6.223 16 C 0.062 3.938 17 H 0.087 0.913 18 C -0.142 4.142 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.099 4.099 22 C -0.178 4.178 23 C -0.084 4.084 24 N -0.209 5.209 25 C -0.076 4.076 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.136 0.864 35 H 0.186 0.814 36 H 0.192 0.808 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 7.639 -8.982 8.803 14.714 hybrid contribution -0.040 0.627 0.477 0.788 sum 7.599 -8.355 9.279 14.617 Atomic orbital electron populations 1.69886 1.08830 1.30089 1.37776 1.26748 0.95616 1.04388 0.91665 0.85178 0.78879 0.75854 0.79604 1.18347 1.19274 1.18439 1.19525 0.96296 0.91490 1.43785 0.91185 1.17482 0.93766 0.91124 0.92059 1.20922 0.98404 0.97504 1.01831 1.20669 0.99902 0.93026 1.01821 1.20556 0.99154 0.97247 1.05905 1.20925 0.98012 0.96176 1.02470 1.19354 0.90794 0.94844 0.99445 1.86007 1.40163 1.29272 1.66907 1.21948 0.94572 0.84890 0.92342 0.91340 1.22443 0.90448 1.05135 0.96146 1.21016 0.93640 1.01102 0.95036 1.21817 0.99162 0.99164 0.94456 1.21507 0.96275 0.95379 0.96706 1.22497 0.94733 0.99581 1.00999 1.23169 1.00833 0.97031 0.87388 1.66839 1.14155 1.10564 1.29342 1.22507 0.90821 0.96580 0.97722 0.90437 0.87073 0.87018 0.86573 0.86224 0.86321 0.88731 0.90137 0.86417 0.81355 0.80768 0.81065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.74 10.79 21.83 0.24 -46.50 16 2 C 0.03 1.51 5.23 85.25 0.45 1.96 16 3 Si 0.98 40.81 29.58 68.60 2.03 42.84 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.48 -28.05 8.72 23.40 0.20 -27.85 16 8 H 0.07 4.04 7.65 -2.91 -0.02 4.02 16 9 C 0.06 3.42 5.58 -21.20 -0.12 3.30 16 10 C -0.17 -9.48 8.62 22.47 0.19 -9.28 16 11 C -0.14 -6.86 9.97 22.00 0.22 -6.64 16 12 C -0.21 -10.07 10.04 22.42 0.23 -9.84 16 13 C -0.16 -7.78 8.36 22.34 0.19 -7.59 16 14 C 0.00 -0.01 6.64 23.08 0.15 0.15 16 15 O -0.31 -15.17 9.17 -89.52 -0.82 -16.00 16 16 C 0.12 4.52 2.77 30.55 0.08 4.61 16 17 H 0.07 2.60 6.53 -2.39 -0.02 2.58 16 18 C -0.10 -2.72 6.81 31.51 0.21 -2.51 16 19 C -0.07 -1.66 6.77 30.48 0.21 -1.45 16 20 C -0.14 -4.15 6.16 -19.59 -0.12 -4.27 16 21 C -0.07 -1.66 10.17 22.47 0.23 -1.43 16 22 C -0.16 -3.53 10.12 22.35 0.23 -3.30 16 23 C 0.07 2.15 11.18 84.71 0.95 3.09 16 24 N -0.50 -19.03 9.01 -182.97 -1.65 -20.68 16 25 C 0.06 2.23 6.47 42.72 0.28 2.51 16 26 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 27 H 0.11 6.51 6.11 -2.91 -0.02 6.49 16 28 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 29 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 30 H 0.12 5.50 5.09 -2.91 -0.01 5.49 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.09 2.49 8.10 -2.39 -0.02 2.47 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.12 1.79 8.14 -2.38 -0.02 1.78 16 35 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 36 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 37 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -73.37 309.96 4.45 -68.92 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 1.09 Total: 29.96 kcal Atomic # 6 Polarization: -62.12 SS G_CDS: 3.57 Total: -58.55 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -1.41 Total: -67.18 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.82 Total: -16.00 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -73.37 4.45 -68.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.818 kcal (2) G-P(sol) polarization free energy of solvation -73.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds