Wall clock time and date at job start Fri Apr 10 2020 14:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86800 * 119.99616 * 2 1 4 4 H 1.48497 * 109.47427 * 264.99777 * 3 2 1 5 5 H 1.48499 * 109.47225 * 144.99588 * 3 2 1 6 6 H 1.48506 * 109.47375 * 24.99863 * 3 2 1 7 7 C 1.39924 * 120.00647 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00676 * 147.64407 * 7 2 1 9 9 C 1.41157 * 120.00096 * 327.65325 * 7 2 1 10 10 C 1.40722 * 120.28693 * 339.29829 * 9 7 2 11 11 C 1.36495 * 119.93019 * 179.97438 * 10 9 7 12 12 C 1.38822 * 120.53510 * 0.02562 * 11 10 9 13 13 C 1.38301 * 120.59319 * 359.96908 * 12 11 10 14 14 C 1.38450 * 120.05252 * 359.78919 * 13 12 11 15 15 O 1.35638 * 120.26871 * 180.23087 * 14 13 12 16 16 C 1.42899 * 116.99639 * 353.81005 * 15 14 13 17 17 H 1.08998 * 110.26758 * 324.44367 * 16 15 14 18 18 C 1.54344 * 110.29357 * 202.28701 * 16 15 14 19 19 C 1.54368 * 102.38839 * 267.41134 * 18 16 15 20 20 C 1.51236 * 105.11808 * 333.70557 * 19 18 16 21 21 C 1.38738 * 130.68765 * 197.16041 * 20 19 18 22 22 C 1.38578 * 118.55221 * 179.97438 * 21 20 19 23 23 C 1.38227 * 118.98976 * 359.97438 * 22 21 20 24 24 N 1.31684 * 120.80332 * 0.02562 * 23 22 21 25 25 C 1.32295 * 122.03087 * 0.02562 * 24 23 22 26 26 H 0.96996 * 120.00582 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.03702 * 359.96063 * 10 9 7 28 28 H 1.07998 * 119.73170 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.69952 * 180.02562 * 12 11 10 30 30 H 1.07999 * 119.97170 * 180.02562 * 13 12 11 31 31 H 1.09000 * 110.82197 * 25.63343 * 18 16 15 32 32 H 1.08998 * 110.82419 * 149.18780 * 18 16 15 33 33 H 1.08999 * 110.31297 * 214.80057 * 19 18 16 34 34 H 1.08996 * 110.40119 * 92.65934 * 19 18 16 35 35 H 1.07998 * 120.72525 * 359.97438 * 21 20 19 36 36 H 1.07998 * 120.50266 * 179.97438 * 22 21 20 37 37 H 1.08006 * 119.59748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.5958 1.9855 -1.3947 5 1 3.4832 1.4732 0.8031 6 1 1.3911 2.6810 0.5917 7 6 2.0084 -1.2117 0.0005 8 1 2.9627 -1.2845 -0.4999 9 6 1.4671 -2.3391 0.6551 10 6 0.4858 -2.1784 1.6509 11 6 -0.0331 -3.2736 2.2788 12 6 0.3996 -4.5495 1.9440 13 6 1.3627 -4.7328 0.9686 14 6 1.9020 -3.6393 0.3126 15 8 2.8435 -3.8143 -0.6480 16 6 3.3343 -5.1424 -0.8410 17 1 3.3891 -5.6671 0.1128 18 6 4.7221 -5.1076 -1.5156 19 6 4.3649 -5.2142 -3.0136 20 6 3.0366 -5.9363 -3.0520 21 6 2.3883 -6.5825 -4.0945 22 6 1.1582 -7.1705 -3.8464 23 6 0.6231 -7.0932 -2.5742 24 7 1.2670 -6.4713 -1.6085 25 6 2.4423 -5.8968 -1.8053 26 1 -0.4851 0.8400 0.0004 27 1 0.1438 -1.1894 1.9182 28 1 -0.7863 -3.1466 3.0422 29 1 -0.0205 -5.4067 2.4491 30 1 1.6917 -5.7299 0.7158 31 1 5.2319 -4.1675 -1.3048 32 1 5.3277 -5.9572 -1.2002 33 1 5.1239 -5.7897 -3.5435 34 1 4.2686 -4.2213 -3.4528 35 1 2.8325 -6.6264 -5.0779 36 1 0.6258 -7.6814 -4.6350 37 1 -0.3352 -7.5477 -2.3701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230276288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:35 Heat of formation + Delta-G solvation = 22.600186 kcal Electronic energy + Delta-G solvation = -21417.724075 eV Core-core repulsion = 18317.938620 eV Total energy + Delta-G solvation = -3099.785456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63737 -38.43143 -36.54101 -34.80788 -33.56464 -32.25933 -29.72606 -29.19681 -28.36466 -26.94274 -25.00001 -23.36786 -21.91143 -21.47068 -20.52278 -19.82062 -17.46484 -16.90093 -16.49954 -15.98010 -15.31273 -15.05400 -14.60175 -14.24021 -14.00276 -13.70504 -13.25890 -13.06489 -12.80035 -12.52477 -12.45458 -12.11478 -11.66744 -11.64785 -11.31489 -11.21771 -11.05695 -10.82687 -10.58224 -10.47982 -10.02754 -9.68422 -9.59197 -9.33850 -8.95784 -8.91603 -8.57384 -7.42515 -6.98011 -6.71675 -4.11606 1.25291 1.46781 2.84341 3.10950 3.13295 3.14033 3.32047 3.85378 3.98629 4.13908 4.45615 4.61791 4.65854 4.87199 5.03659 5.07388 5.19467 5.34947 5.54356 5.68843 5.72267 5.83152 5.89556 5.94781 6.10980 6.14969 6.28220 6.35169 6.39723 6.49000 6.61069 6.86829 7.08933 7.16797 7.40943 7.43978 7.82399 7.91868 8.20272 8.27550 8.32662 8.48216 8.75772 8.91878 9.18641 10.16535 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.005860 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.365914 B = 4777.381671 C = 5476.101877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.086 3.914 3 Si 0.895 3.105 4 H -0.269 1.269 5 H -0.259 1.259 6 H -0.277 1.277 7 C -0.457 4.457 8 H 0.084 0.916 9 C 0.107 3.893 10 C -0.167 4.167 11 C -0.117 4.117 12 C -0.226 4.226 13 C -0.146 4.146 14 C -0.007 4.007 15 O -0.287 6.287 16 C 0.134 3.866 17 H 0.080 0.920 18 C -0.112 4.112 19 C -0.076 4.076 20 C -0.139 4.139 21 C -0.073 4.073 22 C -0.175 4.175 23 C 0.097 3.903 24 N -0.455 5.455 25 C 0.105 3.895 26 H 0.281 0.719 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.969 -9.462 -6.403 12.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.194 1.194 5 H -0.183 1.183 6 H -0.202 1.202 7 C -0.485 4.485 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.187 4.187 11 C -0.136 4.136 12 C -0.245 4.245 13 C -0.165 4.165 14 C -0.050 4.050 15 O -0.201 6.201 16 C 0.075 3.925 17 H 0.098 0.902 18 C -0.150 4.150 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.099 4.099 22 C -0.194 4.194 23 C -0.061 4.061 24 N -0.164 5.164 25 C -0.033 4.033 26 H 0.092 0.908 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.448 -9.116 -5.707 12.056 hybrid contribution 0.202 0.441 -0.926 1.046 sum 5.650 -8.675 -6.633 12.295 Atomic orbital electron populations 1.69964 1.08025 1.29594 1.32292 1.25899 0.94294 1.01333 0.91877 0.86556 0.81222 0.80896 0.79482 1.19434 1.18260 1.20179 1.19322 1.05432 0.93305 1.30440 0.89806 1.16969 0.91846 0.88945 0.91849 1.20574 1.01830 0.97362 0.98914 1.20319 0.99893 0.93336 1.00010 1.20062 1.04407 0.95583 1.04485 1.20689 1.00352 0.96229 0.99265 1.19059 0.97259 0.94026 0.94668 1.86057 1.55084 1.24407 1.54582 1.21458 0.90374 0.84288 0.96352 0.90240 1.22349 0.94668 1.03887 0.94096 1.20967 0.92615 1.00351 0.97369 1.21471 0.98755 0.98908 0.95015 1.20987 0.94590 0.95879 0.98397 1.22038 0.96650 1.02011 0.98748 1.22678 0.99060 0.95660 0.88698 1.66959 1.07108 1.06744 1.35571 1.22525 0.91327 0.94307 0.95153 0.90815 0.87239 0.89646 0.89589 0.87814 0.88495 0.89600 0.90515 0.89285 0.85314 0.84902 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.64 11.69 55.55 0.65 -19.99 16 2 C 0.09 2.23 4.79 -17.33 -0.08 2.15 16 3 Si 0.89 18.99 29.66 -169.99 -5.04 13.94 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -12.65 8.66 -37.84 -0.33 -12.97 16 8 H 0.08 2.29 7.70 -52.49 -0.40 1.89 16 9 C 0.11 2.99 5.60 -106.68 -0.60 2.39 16 10 C -0.17 -4.54 8.74 -39.27 -0.34 -4.88 16 11 C -0.12 -2.91 9.97 -39.99 -0.40 -3.31 16 12 C -0.23 -5.46 10.04 -39.34 -0.39 -5.85 16 13 C -0.15 -3.57 8.48 -39.48 -0.33 -3.90 16 14 C -0.01 -0.17 6.66 -38.33 -0.26 -0.43 16 15 O -0.29 -6.79 9.09 -18.61 -0.17 -6.96 16 16 C 0.13 2.49 2.76 -26.80 -0.07 2.41 16 17 H 0.08 1.46 6.44 -51.93 -0.33 1.13 16 18 C -0.11 -1.54 6.81 -25.31 -0.17 -1.71 16 19 C -0.08 -0.97 6.77 -26.90 -0.18 -1.16 16 20 C -0.14 -2.14 6.16 -104.20 -0.64 -2.79 16 21 C -0.07 -0.95 10.17 -39.27 -0.40 -1.35 16 22 C -0.17 -2.22 10.12 -39.46 -0.40 -2.62 16 23 C 0.10 1.48 11.18 -17.62 -0.20 1.28 16 24 N -0.46 -8.67 9.22 -9.19 -0.08 -8.76 16 25 C 0.11 1.94 6.53 -82.03 -0.54 1.40 16 26 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 27 H 0.11 3.00 6.44 -52.48 -0.34 2.66 16 28 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.10 2.34 5.17 -52.49 -0.27 2.07 16 31 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -31.71 311.27 -9.58 -41.28 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.29 Total: 7.12 kcal Atomic # 6 Polarization: -25.99 SS G_CDS: -5.34 Total: -31.33 kcal Atomic # 7 Polarization: -29.32 SS G_CDS: 0.56 Total: -28.75 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.17 Total: -6.96 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.04 Total: 13.94 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.71 -9.58 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.883 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds