Wall clock time and date at job start Fri Apr 10 2020 14:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86800 * 119.99616 * 2 1 4 4 H 1.48497 * 109.47427 * 264.99777 * 3 2 1 5 5 H 1.48499 * 109.47225 * 144.99588 * 3 2 1 6 6 H 1.48506 * 109.47375 * 24.99863 * 3 2 1 7 7 C 1.39924 * 120.00647 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00676 * 147.64407 * 7 2 1 9 9 C 1.41157 * 120.00096 * 327.65325 * 7 2 1 10 10 C 1.40722 * 120.28693 * 339.29829 * 9 7 2 11 11 C 1.36495 * 119.93019 * 179.97438 * 10 9 7 12 12 C 1.38822 * 120.53510 * 0.02562 * 11 10 9 13 13 C 1.38301 * 120.59319 * 359.96908 * 12 11 10 14 14 C 1.38450 * 120.05252 * 359.78919 * 13 12 11 15 15 O 1.35638 * 120.26871 * 180.23087 * 14 13 12 16 16 C 1.42899 * 116.99639 * 353.81005 * 15 14 13 17 17 H 1.08998 * 110.26758 * 324.44367 * 16 15 14 18 18 C 1.54344 * 110.29357 * 202.28701 * 16 15 14 19 19 C 1.54368 * 102.38839 * 267.41134 * 18 16 15 20 20 C 1.51236 * 105.11808 * 333.70557 * 19 18 16 21 21 C 1.38738 * 130.68765 * 197.16041 * 20 19 18 22 22 C 1.38578 * 118.55221 * 179.97438 * 21 20 19 23 23 C 1.38227 * 118.98976 * 359.97438 * 22 21 20 24 24 N 1.31684 * 120.80332 * 0.02562 * 23 22 21 25 25 C 1.32295 * 122.03087 * 0.02562 * 24 23 22 26 26 H 0.96996 * 120.00582 * 359.97438 * 1 2 3 27 27 H 1.08007 * 120.03702 * 359.96063 * 10 9 7 28 28 H 1.07998 * 119.73170 * 180.02562 * 11 10 9 29 29 H 1.07999 * 119.69952 * 180.02562 * 12 11 10 30 30 H 1.07999 * 119.97170 * 180.02562 * 13 12 11 31 31 H 1.09000 * 110.82197 * 25.63343 * 18 16 15 32 32 H 1.08998 * 110.82419 * 149.18780 * 18 16 15 33 33 H 1.08999 * 110.31297 * 214.80057 * 19 18 16 34 34 H 1.08996 * 110.40119 * 92.65934 * 19 18 16 35 35 H 1.07998 * 120.72525 * 359.97438 * 21 20 19 36 36 H 1.07998 * 120.50266 * 179.97438 * 22 21 20 37 37 H 1.08006 * 119.59748 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.5958 1.9855 -1.3947 5 1 3.4832 1.4732 0.8031 6 1 1.3911 2.6810 0.5917 7 6 2.0084 -1.2117 0.0005 8 1 2.9627 -1.2845 -0.4999 9 6 1.4671 -2.3391 0.6551 10 6 0.4858 -2.1784 1.6509 11 6 -0.0331 -3.2736 2.2788 12 6 0.3996 -4.5495 1.9440 13 6 1.3627 -4.7328 0.9686 14 6 1.9020 -3.6393 0.3126 15 8 2.8435 -3.8143 -0.6480 16 6 3.3343 -5.1424 -0.8410 17 1 3.3891 -5.6671 0.1128 18 6 4.7221 -5.1076 -1.5156 19 6 4.3649 -5.2142 -3.0136 20 6 3.0366 -5.9363 -3.0520 21 6 2.3883 -6.5825 -4.0945 22 6 1.1582 -7.1705 -3.8464 23 6 0.6231 -7.0932 -2.5742 24 7 1.2670 -6.4713 -1.6085 25 6 2.4423 -5.8968 -1.8053 26 1 -0.4851 0.8400 0.0004 27 1 0.1438 -1.1894 1.9182 28 1 -0.7863 -3.1466 3.0422 29 1 -0.0205 -5.4067 2.4491 30 1 1.6917 -5.7299 0.7158 31 1 5.2319 -4.1675 -1.3048 32 1 5.3277 -5.9572 -1.2002 33 1 5.1239 -5.7897 -3.5435 34 1 4.2686 -4.2213 -3.4528 35 1 2.8325 -6.6264 -5.0779 36 1 0.6258 -7.6814 -4.6350 37 1 -0.3352 -7.5477 -2.3701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230276288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:34 Heat of formation + Delta-G solvation = 4.902761 kcal Electronic energy + Delta-G solvation = -21418.491493 eV Core-core repulsion = 18317.938620 eV Total energy + Delta-G solvation = -3100.552874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87491 -40.13963 -38.18191 -36.21083 -35.53242 -33.41818 -31.68561 -30.59919 -30.00440 -28.24953 -26.99274 -24.47890 -23.50759 -22.83066 -22.29222 -21.31526 -19.36848 -18.61422 -17.82515 -17.19900 -17.03951 -16.38919 -16.04903 -15.94940 -15.58800 -15.04959 -14.74318 -14.44793 -14.34713 -14.23339 -13.77825 -13.61116 -13.46851 -12.96938 -12.88054 -12.68300 -12.62214 -12.30555 -12.17870 -12.02522 -11.72565 -11.62958 -11.22772 -10.88629 -10.66720 -10.17328 -9.74956 -9.45460 -8.93156 -8.65770 -6.16848 0.10443 0.37675 0.95558 1.13460 1.36175 1.46414 1.57249 2.20627 2.54464 2.66194 2.98061 3.07578 3.49437 3.69986 3.76938 4.00470 4.05277 4.09240 4.32980 4.41780 4.48102 4.52950 4.55090 4.65447 4.73068 4.85041 4.92855 5.02992 5.10415 5.12496 5.20397 5.22757 5.30801 5.43656 5.48310 5.80116 5.83540 5.94683 6.18787 6.32131 6.52670 6.76250 6.89561 7.10134 7.24863 8.25679 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.005860 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.365914 B = 4777.381671 C = 5476.101877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.047 3.953 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.262 1.262 7 C -0.492 4.492 8 H 0.073 0.927 9 C 0.069 3.931 10 C -0.190 4.190 11 C -0.124 4.124 12 C -0.227 4.227 13 C -0.149 4.149 14 C -0.012 4.012 15 O -0.309 6.309 16 C 0.120 3.880 17 H 0.068 0.932 18 C -0.105 4.105 19 C -0.071 4.071 20 C -0.144 4.144 21 C -0.073 4.073 22 C -0.159 4.159 23 C 0.073 3.927 24 N -0.501 5.501 25 C 0.061 3.939 26 H 0.291 0.709 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.169 0.831 36 H 0.175 0.825 37 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.862 -10.303 -8.220 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.171 4.171 3 Si 0.793 3.207 4 H -0.184 1.184 5 H -0.183 1.183 6 H -0.186 1.186 7 C -0.520 4.520 8 H 0.092 0.908 9 C 0.067 3.933 10 C -0.209 4.209 11 C -0.142 4.142 12 C -0.246 4.246 13 C -0.168 4.168 14 C -0.056 4.056 15 O -0.224 6.224 16 C 0.062 3.938 17 H 0.086 0.914 18 C -0.142 4.142 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.099 4.099 22 C -0.178 4.178 23 C -0.084 4.084 24 N -0.210 5.210 25 C -0.076 4.076 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.187 0.813 36 H 0.193 0.807 37 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.345 -9.978 -7.526 14.016 hybrid contribution -0.135 0.502 -0.430 0.675 sum 6.210 -9.476 -7.956 13.844 Atomic orbital electron populations 1.69977 1.09547 1.31181 1.32665 1.26768 0.95024 1.04571 0.90719 0.85379 0.79547 0.75918 0.79871 1.18389 1.18251 1.18644 1.19455 1.05564 0.94863 1.32128 0.90848 1.17398 0.92920 0.90248 0.92780 1.20584 1.02893 0.97579 0.99874 1.20593 1.00236 0.93035 1.00327 1.20452 1.03807 0.96291 1.04054 1.20896 1.00273 0.96560 0.99089 1.19232 0.97591 0.93871 0.94913 1.85994 1.54494 1.28060 1.53835 1.21937 0.92983 0.81956 0.96877 0.91387 1.22451 0.92119 1.05141 0.94511 1.21015 0.92649 1.00292 0.96814 1.21820 0.99519 0.98839 0.94430 1.21510 0.94472 0.94457 0.99420 1.22499 0.96381 1.00430 0.98507 1.23169 0.99874 0.95845 0.89535 1.66826 1.08070 1.08260 1.37877 1.22504 0.92143 0.96356 0.96551 0.89796 0.88470 0.87056 0.86789 0.86466 0.88754 0.86371 0.86439 0.90121 0.81330 0.80739 0.81054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.32 11.69 21.83 0.26 -44.07 16 2 C 0.05 2.49 4.79 85.25 0.41 2.90 16 3 Si 0.97 39.59 29.66 68.60 2.03 41.63 16 4 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 5 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.49 -28.52 8.66 23.40 0.20 -28.32 16 8 H 0.07 4.24 7.70 -2.91 -0.02 4.21 16 9 C 0.07 4.06 5.60 -21.20 -0.12 3.94 16 10 C -0.19 -10.71 8.74 22.47 0.20 -10.51 16 11 C -0.12 -6.25 9.97 22.00 0.22 -6.03 16 12 C -0.23 -11.02 10.04 22.42 0.23 -10.79 16 13 C -0.15 -7.48 8.48 22.34 0.19 -7.29 16 14 C -0.01 -0.66 6.66 23.08 0.15 -0.50 16 15 O -0.31 -15.30 9.09 -89.52 -0.81 -16.12 16 16 C 0.12 4.58 2.76 30.55 0.08 4.66 16 17 H 0.07 2.62 6.44 -2.39 -0.02 2.61 16 18 C -0.10 -2.78 6.81 31.51 0.21 -2.56 16 19 C -0.07 -1.67 6.77 30.48 0.21 -1.46 16 20 C -0.14 -4.18 6.16 -19.59 -0.12 -4.31 16 21 C -0.07 -1.67 10.17 22.47 0.23 -1.44 16 22 C -0.16 -3.56 10.12 22.35 0.23 -3.33 16 23 C 0.07 2.16 11.18 84.71 0.95 3.11 16 24 N -0.50 -19.26 9.22 -182.98 -1.69 -20.95 16 25 C 0.06 2.28 6.53 42.72 0.28 2.56 16 26 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 27 H 0.10 5.58 6.44 -2.91 -0.02 5.56 16 28 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 29 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.12 5.46 5.17 -2.91 -0.02 5.45 16 31 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 32 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.17 4.08 8.06 -2.91 -0.02 4.06 16 Total: -1.00 -73.21 311.27 4.42 -68.79 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 1.09 Total: 30.09 kcal Atomic # 6 Polarization: -62.91 SS G_CDS: 3.54 Total: -59.37 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -1.43 Total: -65.02 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.81 Total: -16.12 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.63 kcal Total: -73.21 4.42 -68.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230276288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.692 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds