Wall clock time and date at job start Fri Apr 10 2020 14:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48497 * 109.47527 * 270.00311 * 3 2 1 5 5 H 1.48508 * 109.46996 * 30.00357 * 3 2 1 6 6 H 1.48505 * 109.47048 * 149.99856 * 3 2 1 7 7 C 1.40036 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00030 * 163.18657 * 7 2 1 9 9 C 1.40844 * 119.99774 * 343.19087 * 7 2 1 10 10 C 1.40767 * 120.33455 * 333.64026 * 9 7 2 11 11 C 1.36399 * 119.98917 * 180.30041 * 10 9 7 12 12 C 1.38967 * 120.70347 * 359.69850 * 11 10 9 13 13 C 1.38020 * 120.68063 * 0.02562 * 12 11 10 14 14 C 1.39247 * 119.98286 * 0.02562 * 13 12 11 15 15 C 1.47758 * 120.34739 * 179.97438 * 14 13 12 16 16 C 1.39746 * 120.12726 * 129.97685 * 15 14 13 17 17 C 1.37821 * 120.14060 * 180.08195 * 16 15 14 18 18 C 1.38940 * 120.25583 * 0.05742 * 17 16 15 19 19 C 1.39531 * 119.78433 * 359.78044 * 18 17 16 20 20 C 1.38210 * 120.30369 * 0.27340 * 19 18 17 21 21 N 1.40397 * 119.72513 * 180.54305 * 19 18 17 22 22 C 1.47318 * 117.68069 * 345.90979 * 21 19 18 23 23 C 1.53526 * 107.55744 * 42.15162 * 22 21 19 24 24 O 1.35892 * 119.50611 * 179.58425 * 18 17 16 25 25 H 0.97002 * 120.00327 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.00312 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.64792 * 179.71922 * 11 10 9 28 28 H 1.07993 * 119.66071 * 180.02562 * 12 11 10 29 29 H 1.08005 * 120.01233 * 179.97438 * 13 12 11 30 30 H 1.08003 * 119.93147 * 0.10739 * 16 15 14 31 31 H 1.08002 * 119.86950 * 180.02562 * 17 16 15 32 32 H 1.08000 * 120.11309 * 179.82155 * 20 19 18 33 33 H 0.96997 * 121.14128 * 165.95574 * 21 19 18 34 34 H 1.09001 * 109.90026 * 282.61282 * 22 21 19 35 35 H 1.09002 * 109.85980 * 161.66685 * 22 21 19 36 36 H 1.09002 * 109.58113 * 181.92853 * 23 22 21 37 37 H 1.08996 * 109.58269 * 61.52824 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.4894 2.0466 -1.4000 5 1 1.4393 2.6527 0.7002 6 1 3.5395 1.4402 0.7001 7 6 2.0082 -1.2127 -0.0005 8 1 3.0535 -1.2325 -0.2711 9 6 1.3491 -2.4066 0.3517 10 6 0.2289 -2.3756 1.2035 11 6 -0.4003 -3.5366 1.5450 12 6 0.0483 -4.7573 1.0554 13 6 1.1404 -4.8201 0.2137 14 6 1.8048 -3.6524 -0.1524 15 6 2.9752 -3.7103 -1.0525 16 6 3.0407 -2.8770 -2.1724 17 6 4.1314 -2.9320 -3.0131 18 6 5.1714 -3.8161 -2.7536 19 6 5.1114 -4.6474 -1.6346 20 6 4.0205 -4.5990 -0.7875 21 7 6.1683 -5.5322 -1.3674 22 6 7.1464 -5.7744 -2.4420 23 6 7.4541 -4.4226 -3.1015 24 8 6.2356 -3.8636 -3.5973 25 1 -0.4851 0.8400 0.0004 26 1 -0.1291 -1.4331 1.5909 27 1 -1.2566 -3.5068 2.2025 28 1 -0.4628 -5.6662 1.3363 29 1 1.4802 -5.7747 -0.1601 30 1 2.2350 -2.1881 -2.3794 31 1 4.1777 -2.2857 -3.8771 32 1 3.9760 -5.2459 0.0762 33 1 6.2508 -5.9692 -0.5053 34 1 6.7259 -6.4584 -3.1792 35 1 8.0593 -6.1980 -2.0232 36 1 8.1512 -4.5690 -3.9266 37 1 7.8925 -3.7485 -2.3656 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241480798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:56:55 Heat of formation + Delta-G solvation = 8.831636 kcal Electronic energy + Delta-G solvation = -21158.373566 eV Core-core repulsion = 18057.991061 eV Total energy + Delta-G solvation = -3100.382505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13588 -38.00441 -36.35432 -34.95973 -33.70953 -31.38906 -30.17779 -29.57162 -28.26818 -26.42571 -25.29884 -23.67369 -22.35436 -20.87134 -20.67891 -19.18145 -17.56027 -17.25160 -16.88178 -16.16377 -15.29300 -14.98900 -14.72960 -14.14301 -13.81117 -13.74986 -13.55673 -13.14691 -13.07156 -12.81046 -12.53342 -12.23682 -11.64142 -11.53634 -11.14756 -11.10718 -11.02400 -10.75166 -10.54430 -10.45168 -10.17042 -9.76641 -9.49764 -9.33219 -9.19974 -7.96158 -7.41809 -7.25693 -6.86622 -6.67486 -4.35173 1.95303 2.21397 2.79506 3.05052 3.06839 3.11850 3.23974 3.49973 3.76005 3.91838 4.54890 4.63484 4.73496 5.02183 5.08917 5.30398 5.43544 5.66065 5.72458 5.87691 6.03416 6.10876 6.22852 6.28463 6.41173 6.54572 6.67731 6.76062 6.99225 7.05184 7.19337 7.29058 7.34580 7.47666 7.58460 7.59556 7.88807 7.91850 8.01581 8.08923 8.11854 8.26484 8.60282 8.84761 8.94316 10.12961 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.006013 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.250703 B = 4655.133725 C = 5998.508493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.903 3.097 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.448 4.448 8 H 0.084 0.916 9 C 0.131 3.869 10 C -0.159 4.159 11 C -0.102 4.102 12 C -0.245 4.245 13 C -0.071 4.071 14 C -0.184 4.184 15 C 0.034 3.966 16 C -0.109 4.109 17 C -0.112 4.112 18 C 0.027 3.973 19 C 0.131 3.869 20 C -0.163 4.163 21 N -0.763 5.763 22 C 0.091 3.909 23 C 0.046 3.954 24 O -0.319 6.319 25 H 0.282 0.718 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.116 0.884 33 H 0.402 0.598 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.216 -5.698 -3.177 12.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.477 4.477 8 H 0.102 0.898 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.121 4.121 12 C -0.264 4.264 13 C -0.089 4.089 14 C -0.186 4.186 15 C 0.033 3.967 16 C -0.128 4.128 17 C -0.131 4.131 18 C -0.020 4.020 19 C 0.033 3.967 20 C -0.185 4.185 21 N -0.400 5.400 22 C -0.034 4.034 23 C -0.032 4.032 24 O -0.234 6.234 25 H 0.093 0.907 26 H 0.135 0.865 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.237 0.763 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.108 -5.461 -3.534 12.020 hybrid contribution 0.463 0.423 0.575 0.851 sum 10.571 -5.038 -2.959 12.078 Atomic orbital electron populations 1.69808 1.07611 1.29402 1.34471 1.25934 0.94661 1.01299 0.92243 0.86383 0.80770 0.80675 0.79466 1.19264 1.20117 1.18384 1.19578 0.98075 0.90757 1.39300 0.89769 1.17529 0.90405 0.91075 0.88195 1.21020 0.99211 0.96902 1.00692 1.20466 0.98598 0.93418 0.99569 1.20254 1.02130 0.96206 1.07854 1.20568 0.95645 0.95619 0.97093 1.18574 1.00500 0.93855 1.05678 1.18547 0.92550 0.92637 0.92939 1.21107 0.97905 1.00026 0.93800 1.20287 0.93565 0.98161 1.01110 1.18412 0.90190 0.99499 0.93890 1.17658 0.89899 0.92590 0.96580 1.20607 0.93034 1.03793 1.01073 1.44475 1.27921 1.51788 1.15842 1.22081 0.93065 0.97083 0.91221 1.23112 0.85870 0.94458 0.99712 1.85968 1.18776 1.79851 1.38817 0.90747 0.86538 0.89586 0.89554 0.89314 0.84785 0.86136 0.86596 0.76294 0.91936 0.89722 0.87688 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 11.02 55.55 0.61 -19.08 16 2 C 0.08 1.88 5.14 -17.32 -0.09 1.79 16 3 Si 0.90 18.45 29.59 -169.99 -5.03 13.42 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.45 -11.41 7.12 -37.92 -0.27 -11.68 16 8 H 0.08 2.14 6.65 -52.49 -0.35 1.79 16 9 C 0.13 3.37 5.55 -106.55 -0.59 2.78 16 10 C -0.16 -4.05 8.62 -39.29 -0.34 -4.39 16 11 C -0.10 -2.38 9.96 -39.97 -0.40 -2.77 16 12 C -0.25 -5.48 10.03 -39.39 -0.40 -5.88 16 13 C -0.07 -1.61 9.51 -39.29 -0.37 -1.98 16 14 C -0.18 -4.43 5.52 -104.23 -0.58 -5.00 16 15 C 0.03 0.75 4.92 -104.88 -0.52 0.23 16 16 C -0.11 -2.31 8.00 -39.17 -0.31 -2.62 16 17 C -0.11 -2.15 9.95 -39.47 -0.39 -2.54 16 18 C 0.03 0.50 6.53 -38.84 -0.25 0.25 16 19 C 0.13 2.34 6.50 -83.46 -0.54 1.80 16 20 C -0.16 -3.17 9.40 -39.03 -0.37 -3.53 16 21 N -0.76 -10.55 5.93 -57.61 -0.34 -10.89 16 22 C 0.09 0.99 7.36 -3.32 -0.02 0.97 16 23 C 0.05 0.54 7.18 37.43 0.27 0.81 16 24 O -0.32 -5.26 10.32 -19.40 -0.20 -5.46 16 25 H 0.28 6.42 8.30 -40.82 -0.34 6.09 16 26 H 0.12 3.04 6.26 -52.49 -0.33 2.71 16 27 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.09 1.81 8.04 -52.48 -0.42 1.39 16 30 H 0.13 2.99 7.32 -52.48 -0.38 2.60 16 31 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 32 H 0.12 2.12 8.05 -52.49 -0.42 1.70 16 33 H 0.40 4.76 8.90 -40.82 -0.36 4.40 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 309.72 15.07 4.67 4.67 Total: -1.00 -28.15 309.72 -9.83 -37.98 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.36 Total: 11.16 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: -5.17 Total: -31.78 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.27 Total: -29.98 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.20 Total: -5.46 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.15 -9.83 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241480798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.812 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds